BAC Information

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BAC

Clone NameB6Ng01-319L19
Chromosome1 (Build37)
Map Location 56,293,890 - 56,295,102
singlet/doubletsinglet
Overlap genenone
Upstream geneMars2, LOC666793, Boll, EG632964, LOC667237, LOC626009, 9130227L01Rik
Downstream geneHsfy2, Satb2, EG329160, 9130024F11Rik, LOC100042869
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-319L19.bB6Ng01-319L19.g
ACCGA109293GA109294
length8401,199
definitionB6Ng01-319L19.b B6Ng01-319L19.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgtttacctctgagtcctattttttaatggggttatttgatt
ttttttggagtccacccaaaacccagatgcccctcaacagaggaatggat
acagaaaatgtggtacatttacacaatggagtactactcagctattaaaa
agaatgaatttatgaaattcctaggcaaatggatggacctggagggcatc
atcctgagtgaggtaacccaatcacaaaggaactcacacaatatgtactc
actgataagtggatatgagcccagaaacttaggatacccaatatataaga
tacaatttgctaaacgcaggaaactcaagaaaaacgaagaccaaagtgtg
gacacttcttagaattgagaacaaaacacccaatggaaggagttacagag
acaaagtttggagctgagacgaaaggatggaccatgtagagactgccata
tccggggatccatcccataatcagcttccaaacgctgacaccattgcata
cactagcaagattttgctgaaaggaccctgatatagctgtcttttgtgag
actatgccggggcctagcaaacacagaagtggatgctcacagttagctat
tggatggatgacagggcccccaatggaggagctagagaaagtacccaagg
agctaaagagatttgcaaccctataggtggaacaacaatatgaactaacc
agtacccccaaagcttgtgtctctagctgcatatgtatcagaagatggcc
tagtcggccatcagtggaaacagaggcccattggtcgtgcaaactttata
agcctcagtataggggaatgccagggccaagaagtgggag

gaattctaaatacctatttgaggcaaataaactttgcacatcattaaaaa
gaggagttggaaatagagcgccaaatcactccaggacagaaagaggtctt
cttttcaaatgaaccaacataggaactaacgaaatagatgtccatcgttt
ggctatgttctgcagagcatgtgccatcctgagtctccttcaagacaaat
atttgaaagcttctttcagaggatcaaagttctatcttttgatgaaatca
agaccagttctttattatctgtggctctgggcctgacctgagctgataag
tcatgatgtggttatttagttgttatttattagttatttagttatgactt
ggtcactttggtttcttttcatcttaataaaaacactataaaagctattt
tccccaggaaccaattcttggtaggatccccttcccaaactcttggtttc
tagaaaaatattttctcagataaaatgaagaccaatctgttttttttcct
acattatttcagaattatattgaaaaaactgatcatattttgtaattata
tatttttctgttagggtagaacattgctcagtatgtctagtgaatcacag
ctaatttaagatttatttaaaattcaaagttcatgaagaaaaaaattgat
gaaagcattgccaattgaacttagagtgtgtagtatctggctaaatgtat
ggtgtttctaaggtactaagagaaaactaccattggaactacaatcatcg
ttcacagtaaacacgatttttctcaaaggctgctacacagtgaagataaa
attgtgcttgcagggtttctgcttataactaaaacaaatatgtaacaaag
actctcacactttgtttgctcatatcgtgacacgtggcatgtttttgtgt
gaggcatttataacttccactggttaaagcgttccactggcatgaaatac
acacaccttgcagctttgatgtaaatattaaattgaaacattgttttaga
gacaagggctcagtgtgctagcatgcaccagctctgggttcagtcctaat
aaccaccatagaaaacaccactttcacaaaaatcatcaactagtgatgtt
caggccttctgattttatgaactagaaattggaatcataaggttaaggct
tactattattacctaatcatgataaatgctatgtattctgtggaatata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_56293890_56295102
seq2: B6Ng01-319L19.g_68_1266

seq1  GAATTCTAAATACCTATTTGAGGCAAATAAACTTTGCACATCATTAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAATACCTATTTGAGGCAAATAAACTTTGCACATCATTAAAAA  50

seq1  GAGGAGTTGGAAATAGAGCGCCAAATCACTCCAGGACAGAAAGAGGTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGTTGGAAATAGAGCGCCAAATCACTCCAGGACAGAAAGAGGTCTT  100

seq1  CTTTTCAAATGAACCAACATAGGAACTAACGAAATAGATGTCCATCGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCAAATGAACCAACATAGGAACTAACGAAATAGATGTCCATCGTTT  150

seq1  GGCTATGTTCTGCAGAGCATGTGCCATCCTGAGTCTCCTTCAAGACAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTATGTTCTGCAGAGCATGTGCCATCCTGAGTCTCCTTCAAGACAAAT  200

seq1  ATTTGAAAGCTTCTTTCAGAGGATCAAAGTTCTATCTTTTGATGAAATCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAAAGCTTCTTTCAGAGGATCAAAGTTCTATCTTTTGATGAAATCA  250

seq1  AGACCAGTTCTTTATTATCTGTGGCTCTGGGCCTGACCTGAGCTGATAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCAGTTCTTTATTATCTGTGGCTCTGGGCCTGACCTGAGCTGATAAG  300

seq1  TCATGATGTGGTTATTTAGTTGTTATTTATTAGTTATTTAGTTATGACTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGATGTGGTTATTTAGTTGTTATTTATTAGTTATTTAGTTATGACTT  350

seq1  GGTCACTTTGGTTTCTTTTCATCTTAATAAAAACACTATAAAAGCTATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCACTTTGGTTTCTTTTCATCTTAATAAAAACACTATAAAAGCTATTT  400

seq1  TCCCCAGGAACCAATTCTTGGTAGGATCCCCTTCCCAAACTCTTGGTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCAGGAACCAATTCTTGGTAGGATCCCCTTCCCAAACTCTTGGTTTC  450

seq1  TAGAAAAATATTTTCTCAGATAAAATGAAGACCAATCTGTTTTTTTTCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAAATATTTTCTCAGATAAAATGAAGACCAATCTGTTTTTTTTCCT  500

seq1  ACATTATTTCAGAATTATATTGAAAAAACTGATCATATTTTGTAATTATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTATTTCAGAATTATATTGAAAAAACTGATCATATTTTGTAATTATA  550

seq1  TATTTTTCTGTTAGGGTAGAACATTGCTCAGTATGTCTAGTGAATCACAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTCTGTTAGGGTAGAACATTGCTCAGTATGTCTAGTGAATCACAG  600

seq1  CTAATTTAAGATTTATTTAAAATTCAAAGTTCATGAAGAAAAAAATTGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTTAAGATTTATTTAAAATTCAAAGTTCATGAAGAAAAAAATTGAT  650

seq1  GAAAGCATTGCCAATTGAACTTAGAGTGTGTAGTATCTGGCTAAATGTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCATTGCCAATTGAACTTAGAGTGTGTAGTATCTGGCTAAATGTAT  700

seq1  GGTGTTTCTAAGGTACTAAGAGAAAACTACCATTGGAACTACAATCATCG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTTTCTAAGGTACTAAGAGAAAACTACCATTGGAACTACAATCATCG  750

seq1  TTCACAGTAAACACGATTTTTCTCAAAGGCTGCTACACAGTGAAGATAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAGTAAACACGATTTTTCTCAAAGGCTGCTACACAGTGAAGATAAA  800

seq1  ATTGTGCTTGCAGGGTTTCTGCTTATAACTAAAACAAATATGTAACAAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGCTTGCAGGGTTTCTGCTTATAACTAAAACAAATATGTAACAAAG  850

seq1  ACTCTCACACTTTGTTTGCTCATATCGTGACACGTGGCATGTTTTTGTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCACACTTTGTTTGCTCATATCGTGACACGTGGCATGTTTTTGTGT  900

seq1  GAGGCATTTATAACTTCCACTGGTTAAAGCGTTCCACTGGGCATGAAATA  950
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GAGGCATTTATAACTTCCACTGGTTAAAGCGTTCCACT-GGCATGAAATA  949

seq1  CACACACCTTGCAGCTTTGATGTTAAATATTAAATTGAAACATTGTTTTT  1000
      |||||||||||||||||||||| |||||||||||||||||||||| ||||
seq2  CACACACCTTGCAGCTTTGATG-TAAATATTAAATTGAAACATTG-TTTT  997

seq1  AGAGACAAAGGGCTCAGTGTGCTTAGCATGCACAAGGCTCTGGGTTCAGT  1050
      |||||| ||||||||||||||| |||||||||| | ||||||||||||| 
seq2  AGAGAC-AAGGGCTCAGTGTGC-TAGCATGCACCA-GCTCTGGGTTCAG-  1043

seq1  TCCTAATAACACACATTAGAAAACA-CACTTTCAC-AAAATCATCAACTT  1098
      |||||||||| |||  ||||||||| ||||||||| |||||||||||| |
seq2  TCCTAATAAC-CACCATAGAAAACACCACTTTCACAAAAATCATCAAC-T  1091

seq1  AGTTGATGGTCCAGGCCTTCTGATTTTATGAAACTATGAATATGAAATCA  1148
      || |||| || ||||||||||||||||||| ||||| |||  || |||||
seq2  AG-TGAT-GTTCAGGCCTTCTGATTTTATG-AACTA-GAAATTGGAATCA  1137

seq1  TAGGGTTAAAAGTATAAATATATTATTTACTAATACCATGATAAATGCTA  1198
      || ||||  |||  | |   |||||||  |||||  ||||||||||||||
seq2  TAAGGTT--AAGGCTTA--CTATTATTACCTAAT--CATGATAAATGCTA  1181

seq1  TGTA-TCTGTG--ATATA  1213
      |||| ||||||  |||||
seq2  TGTATTCTGTGGAATATA  1199


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