BAC Information

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BAC

Clone NameB6Ng01-319M17
Chromosome1 (Build37)
Map Location 136,135,052 - 136,136,016
singlet/doubletsinglet
Overlap genenone
Upstream genePlekha6, Golt1a, Kiss1, LOC100038824, Ren1, Etnk2, Sox13, LOC667371, Snrpe, Zc3h11a, LOC667118, Lax1, Atp2b4, Optc, Prelp, LOC100042352, LOC100042358, Fmod, Btg2, EG667414, Chit1, Chi3l1, Mybph, Adora1
Downstream geneMyog, Ppfia4, LOC100042382, Tmem183a, 4933406M09Rik, Cyb5r1, Adipor1, Klhl12, Rabif, 4931440L10Rik, Jarid1b, LOC100042418, Syt2, Ppp1r12b, Ube2t, Lgr6, Ptprv, LOC100042432, Ptpn7, Arl8a, Gpr37l1, LOC100043064
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-319M17.bB6Ng01-319M17.g
ACCGA109337GA109338
length1,116960
definitionB6Ng01-319M17.b B6Ng01-319M17.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcactggtcttaccacattccccatcatcctgaagcagctgggctg
atagaaagatggaatggccttttgaagacgcagttacagcgccaattagg
tggtaacagcttggaaggctggggcagagttcttcagaaggcagtatatg
ctttgaatcagcgctcgatatatggtacagtttcacccatagccaggatt
catgggtccaggaatcaaggggtggaaaacggaatagttccacttactat
cactcctagtgaccctctaggaaaatttttgcttcctgtccccataactc
taggttctgctggcttagaagttttggctccagagaggggagtgctccta
ccaggagctacaacaaacatttcattgaactggaagctcagacttccccc
tggtcattttgggcttctaatgcccttaaaccaacaggctaaaaaaggaa
taacagtgttaggaggggtgatagatccagattaccatggggaaattgga
ttacctcttcacaatggtggtaagcaagattatgtctggagtgcaggaga
tcccttagggcgtctcttagtactaccatgtcctgtgattaaagtcaatg
ggaaactacaacagcctaatccaagcaggatgacaaaggacgcagaccca
tcaggaatgaaggtatgggttaatcctccaggaaaagagccaagacctgc
tgaggtgctggctgaaggtgaaggaaatacagaatgggtagtagaggaag
gtagttataaataccaattaaaggccacgtaaccagttgcagaaacgagg
attataaagtaatatgaatgcccattgtaaatttactaatgcgtttgcga
ttgtacgagggatagttatatcatgttaggcgtatttacaaccttgttat
tgtttcatgtgaacatgagatatatttgtgtcaagttgacaagggtggat
tgtagtggctatcctgttgtcaacttgacatattggaatgactacatccg
gattggagctccacagtgaccctatctggaggctgaagatccttatctgg
attctgttgaagatcctgaacctactggctatgggattcgaagatttgac
tccgaagttaaggaac
gaattctgcttaaagcagaaatggctctccaagacatacactgcccccac
aaacccggatccccctccctcaacctgaggctcttctgccaagtccttag
gtgtccttagtgtttctagatccccacacaagagggtgtggcctcctttc
cctccacagccttggctgttccagccttgctgaagctcagctggatgtgg
gaaacacggaggtcagaggtcagcagcacatcctcgtcctcccagagagc
actgcatatggggtcatttgtgctcatgtctgtgactgtgagcttttcct
ggggctccctgccttcttatctcggcttgccctcggatacccagaagggg
cttgcttcttaattgtcgctgagtagaatgaggtgaatggaagatgacaa
tgtggttaaaaagaaacctcagttccttcctccaggatttagaaacagtt
ggtgccatccagagtgagcagaactaaatggcccacatatcctgtgccca
tgttcccatcccacacagacacaggctcccatagacttggggtgtcccct
ttgcagactttcagacctgggagaaggagctggaaaggggagagaaaaag
gaagagacctacatttctggtcttcaaaggcagagcagtgtgggatagga
aaagaacggagcttccaggaagtcacgctgggatggacagaactggaggg
ggtggtacattcccctgctaacctgcagcctttctgtcctgacttccggt
tcttattcaggtctccttgtgcttgcagtgcccagaataaccatgacata
ggaaccagaataaactgcctgctggaagaaaaagggcttgtttctttctt
tctttctttctttctttctttctttcttcttctgtcttcttctttctttc
tttctttcttctttcttctctcttctctcttctctctctctctctctctc
tctctctctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_136135052_136136016
seq2: B6Ng01-319M17.g_69_1028 (reverse)

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGAGAAAGAGAGAAAGA  50
      ||||||||||||||||||||||||||||| ||||||| ||||||| ||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAGAG-AAGAGAG-AAGAGAG-AAGA  47

seq1  AAGAAAGAAAGAAAGAAAGAAAGA--AAGAAAGAAAGAAAGAAAGAAAGA  98
      ||| ||||||||||||||||||||  |||| ||||   ||||||||||||
seq2  AAG-AAGAAAGAAAGAAAGAAAGAAGAAGACAGAA--GAAGAAAGAAAGA  94

seq1  AAGAAAGAAAGAAAGAAAGAAAGAAAACAAGCCCTTTTTCTTCCAGCAGG  148
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AAGAAAGAAAGAAAGAAAGAAAG-AAACAAGCCCTTTTTCTTCCAGCAGG  143

seq1  CAGTTTATTCTGGTTCCTATGTCATGGTTATTCTGGGCACTGCAAGCACA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTATTCTGGTTCCTATGTCATGGTTATTCTGGGCACTGCAAGCACA  193

seq1  AGGAGACCTGAATAAGAACCGGAAGTCAGGACAGAAAGGCTGCAGGTTAG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGACCTGAATAAGAACCGGAAGTCAGGACAGAAAGGCTGCAGGTTAG  243

seq1  CAGGGGAATGTACCACCCCCTCCAGTTCTGTCCATCCCAGCGTGACTTCC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGAATGTACCACCCCCTCCAGTTCTGTCCATCCCAGCGTGACTTCC  293

seq1  TGGAAGCTCCGTTCTTTTCCTATCCCACACTGCTCTGCCTTTGAAGACCA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGCTCCGTTCTTTTCCTATCCCACACTGCTCTGCCTTTGAAGACCA  343

seq1  GAAATGTAGGTCTCTTCCTTTTTCTCTCCCCTTTCCAGCTCCTTCTCCCA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGTAGGTCTCTTCCTTTTTCTCTCCCCTTTCCAGCTCCTTCTCCCA  393

seq1  GGTCTGAAAGTCTGCAAAGGGGACACCCCAAGTCTATGGGAGCCTGTGTC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTGAAAGTCTGCAAAGGGGACACCCCAAGTCTATGGGAGCCTGTGTC  443

seq1  TGTGTGGGATGGGAACATGGGCACAGGATATGTGGGCCATTTAGTTCTGC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGGGATGGGAACATGGGCACAGGATATGTGGGCCATTTAGTTCTGC  493

seq1  TCACTCTGGATGGCACCAACTGTTTCTAAATCCTGGAGGAAGGAACTGAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCTGGATGGCACCAACTGTTTCTAAATCCTGGAGGAAGGAACTGAG  543

seq1  GTTTCTTTTTAACCACATTGTCATCTTCCATTCACCTCATTCTACTCAGC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTTTTTAACCACATTGTCATCTTCCATTCACCTCATTCTACTCAGC  593

seq1  GACAATTAAGAAGCAAGCCCCTTCTGGGTATCCGAGGGCAAGCCGAGATA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAATTAAGAAGCAAGCCCCTTCTGGGTATCCGAGGGCAAGCCGAGATA  643

seq1  AGAAGGCAGGGAGCCCCAGGAAAAGCTCACAGTCACAGACATGAGCACAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGCAGGGAGCCCCAGGAAAAGCTCACAGTCACAGACATGAGCACAA  693

seq1  ATGACCCCATATGCAGTGCTCTCTGGGAGGACGAGGATGTGCTGCTGACC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACCCCATATGCAGTGCTCTCTGGGAGGACGAGGATGTGCTGCTGACC  743

seq1  TCTGACCTCCGTGTTTCCCACATCCAGCTGAGCTTCAGCAAGGCTGGAAC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACCTCCGTGTTTCCCACATCCAGCTGAGCTTCAGCAAGGCTGGAAC  793

seq1  AGCCAAGGCTGTGGAGGGAAAGGAGGCCACACCCTCTTGTGTGGGGATCT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAAGGCTGTGGAGGGAAAGGAGGCCACACCCTCTTGTGTGGGGATCT  843

seq1  AGAAACACTAAGGACACCTAAGGACTTGGCAGAAGAGCCTCAGGTTGAGG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACACTAAGGACACCTAAGGACTTGGCAGAAGAGCCTCAGGTTGAGG  893

seq1  GAGGGGGATCCGGGTTTGTGGGGGCAGTGTATGTCTTGGAGAGCCATTTC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGGATCCGGGTTTGTGGGGGCAGTGTATGTCTTGGAGAGCCATTTC  943

seq1  TGCTTTAAGCAGAATTC  965
      |||||||||||||||||
seq2  TGCTTTAAGCAGAATTC  960