BAC Information

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BAC

Clone NameB6Ng01-320B05
Chromosome1 (Build37)
Map Location 181,519,857 - 181,689,766
singlet/doubletdoublet
Overlap gene9630058J23Rik, Sccpdh, Gm1305, Ahctf1
Upstream geneD230039L06Rik, Kif26b, Smyd3, LOC666354, LOC433941, Tfb2m, LOC100040874
Downstream geneLOC100040914, LOC100042190, Cdc42bpa, Cabc1, Psen2, EG277333, Itpkb, 6330403A02Rik, Gm821, Parp1, Lin9, Mixl1, LOC666431, Acbd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-320B05.bB6Ng01-320B05.g
ACCGA109542GA109543
length1,1851,132
definitionB6Ng01-320B05.b B6Ng01-320B05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(181,688,575 - 181,689,766)(181,519,857 - 181,520,991)
sequence
gaattcatagacctctgtatcaaaaaacaaaagacccaaacatgattttg
atagtcattcaaaaatatgcataagaagtacccgcaaagcaaaggtgatg
tccatcagtgcttgctgtctgaaacacggtctagtttaggtatggtgact
cacagaggctgagagaggaatgtgagtttcaggtcaatcttggttattat
agggagatactctccagcagtgaagagaacccccaggctagcagattggt
tctagttcctaattatactcaagtgtaaggttaccttgaagtatacacta
gcacactgcttcagttatagagccagttgtcctaatcaatcagtatgatc
actggagccatccagcacctttcattcaacactttgattaacactgtgtg
gaagataaacagtgataactttaatgctttgaggctctatgatcatttaa
taaaactaacccacatagacttttaatttgtaaggcacagaatagctcat
taccttatgagtgagcagtgggtctgatattaaaacctacccacaaaact
tggatgatcatctttgtcaactcagtcaaatattttttgctgaggataaa
aaatgtaataactggaatcttccagtacttcaacaaaaatagtaggaaaa
ataaaggattttcctggagttttgttgttgttgttgttccttattttgta
atttttcattttaataaaaaatgtttcgtaggtttgatggacatttgcaa
caatcaagaagcaagtgattattcatattagaaaagttagtttcaatgaa
aatctagatgaatgtcaatatttggaaagctagtttcttttttcatttgt
tgtttgtttcctctgtgtagcctggctgacctggatctcattctgaaggc
caggctgttctcagattcagagatctgcctgcttctgcctccctctgtca
gcacctggacaagctgggttattgggcaagttgtgagattagttgttggg
tattagtcatcagtactatagatactgtatctagatatctccacacaaca
taagaaatctctgcaatgtttcagagactgctttcttgggagtatagtgt
ttgtctattactttagtggaccttggagaaaaaggccagtggatgtatac
tgcggaattctacagcttaccatgttaattctgag
gaattcagatttgccttcctctgcctctctaatgctgggattaaaggtgt
gatccaccgtgtcaagctattttctactcttatattttgctttttttggg
gggcgggggtctttttacttagtccaagatggctttaaagttcctacaaa
ggatggcctggaaccgattctcctgcctctgttttaaagcgctgaggcac
aggagagtgccactgtgtccggcttagttcttactcactgcaacataggg
ctgtaagtaagctttattagtgtttgcctttgaaagtttttcttaaaagg
ggggagtgcaggtttatctcaatgatctccctcacctggcagtgagggtc
aggagcacaccttggtttttcccgtctccactgctttatatacggctagc
gatcttagaaggtagatgcccagagaagccaaaacaaagctagaaatccg
agtttaagtaacttggcaaaagtacaggagataagtgttggaagcaggcc
tggcttctggattgtccattctctggttcttgggcaagaaaagttctctc
ctcttctttctcttcctcctctttcttcttcctcctttcccttcctcctc
ttcttcttcctctttttttcttccctcttcttcctcctctttttcttttt
ttgctgtgcaaggaatatgatcccaggcctcataccattaagcaactccc
actgcctcatattcctttcttttaaaacaatgttgttaattttgtgtatt
tgtggaggtcagacctctgtgtcaggtgtcatcaattgcttgtccaccta
attattttacatttgattgattgagactgaatttcagtcctgacttgttt
tatgccaacttgtcccaagctagagtcatcagagaggtggaaaccctaat
tgacaaaatgcctccgtaagatggggctgtaggcaggactgtggggttgt
tctcgaaatgagtgattgaagtgagagggccagcctattgtgggtggtgc
catccctgagctggtgatcctggttactataagaaaggcaggctggagca
agacacgagaagcaccagttcagcaggcaccctcataggcctccatcact
ctgctcaggttcctggccctgttagcttcctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_181688575_181689766
seq2: B6Ng01-320B05.b_43_1227 (reverse)

seq1  CTCAGAATAAACAATGGTAAGCTGTAGAATACTCCGGCAGTTATCCAT-C  49
      |||||||| ||| |||||||||||||||||  ||| |||| ||| ||| |
seq2  CTCAGAATTAAC-ATGGTAAGCTGTAGAAT--TCC-GCAG-TATACATCC  45

seq1  ACTTGGGCTTTTCTCCAAGTTCCAACTAAAGTATAGGACAAACACTATAC  99
      ||| |   ||||||||||| ||| |||||||||   ||||||||||||||
seq2  ACTGGCCTTTTTCTCCAAGGTCC-ACTAAAGTAATAGACAAACACTATAC  94

seq1  TCCCAAGAAAGCAGTCTCTGAAACATTTGCAGAGATTTC-TATG-TGTGT  147
      ||||||||||||||||||||||||| ||||||||||||| |||| |||||
seq2  TCCCAAGAAAGCAGTCTCTGAAACA-TTGCAGAGATTTCTTATGTTGTGT  143

seq1  GGAGATTATCTAGATAACAGTATCTATAGTACTGATGACTAATACCCAAC  197
      ||||| ||||||||| ||||||||||||||||||||||||||||||||||
seq2  GGAGA-TATCTAGAT-ACAGTATCTATAGTACTGATGACTAATACCCAAC  191

seq1  AACTAAATCTTCACAACTTGCCCAATAA-CCAGCTTGTCCAGGTGCTGAC  246
      |||| |||| |||||||||||||||||| |||||||||||||||||||||
seq2  AACT-AATC-TCACAACTTGCCCAATAACCCAGCTTGTCCAGGTGCTGAC  239

seq1  AGAGGGAGGCAGAAGCAGGCAGATCTCTGAATCTGAGAACAGCCTGGCCT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGAGGCAGAAGCAGGCAGATCTCTGAATCTGAGAACAGCCTGGCCT  289

seq1  TCAGAATGAGATCCAGGTCAGCCAGGCTACACAGAGGAAACAAACAACAA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAATGAGATCCAGGTCAGCCAGGCTACACAGAGGAAACAAACAACAA  339

seq1  ATGAAAAAAGAAACTAGCTTTCCAAATATTGACATTCATCTAGATTTTCA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAAAAGAAACTAGCTTTCCAAATATTGACATTCATCTAGATTTTCA  389

seq1  TTGAAACTAACTTTTCTAATATGAATAATCACTTGCTTCTTGATTGTTGC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAACTAACTTTTCTAATATGAATAATCACTTGCTTCTTGATTGTTGC  439

seq1  AAATGTCCATCAAACCTACGAAACATTTTTTATTAAAATGAAAAATTACA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTCCATCAAACCTACGAAACATTTTTTATTAAAATGAAAAATTACA  489

seq1  AAATAAGGAACAACAACAACAACAAAACTCCAGGAAAATCCTTTATTTTT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAGGAACAACAACAACAACAAAACTCCAGGAAAATCCTTTATTTTT  539

seq1  CCTACTATTTTTGTTGAAGTACTGGAAGATTCCAGTTATTACATTTTTTA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACTATTTTTGTTGAAGTACTGGAAGATTCCAGTTATTACATTTTTTA  589

seq1  TCCTCAGCAAAAAATATTTGACTGAGTTGACAAAGATGATCATCCAAGTT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCAGCAAAAAATATTTGACTGAGTTGACAAAGATGATCATCCAAGTT  639

seq1  TTGTGGGTAGGTTTTAATATCAGACCCACTGCTCACTCATAAGGTAATGA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGGTAGGTTTTAATATCAGACCCACTGCTCACTCATAAGGTAATGA  689

seq1  GCTATTCTGTGCCTTACAAATTAAAAGTCTATGTGGGTTAGTTTTATTAA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATTCTGTGCCTTACAAATTAAAAGTCTATGTGGGTTAGTTTTATTAA  739

seq1  ATGATCATAGAGCCTCAAAGCATTAAAGTTATCACTGTTTATCTTCCACA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATCATAGAGCCTCAAAGCATTAAAGTTATCACTGTTTATCTTCCACA  789

seq1  CAGTGTTAATCAAAGTGTTGAATGAAAGGTGCTGGATGGCTCCAGTGATC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTTAATCAAAGTGTTGAATGAAAGGTGCTGGATGGCTCCAGTGATC  839

seq1  ATACTGATTGATTAGGACAACTGGCTCTATAACTGAAGCAGTGTGCTAGT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGATTGATTAGGACAACTGGCTCTATAACTGAAGCAGTGTGCTAGT  889

seq1  GTATACTTCAAGGTAACCTTACACTTGAGTATAATTAGGAACTAGAACCA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATACTTCAAGGTAACCTTACACTTGAGTATAATTAGGAACTAGAACCA  939

seq1  ATCTGCTAGCCTGGGGGTTCTCTTCACTGCTGGAGAGTATCTCCCTATAA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCTAGCCTGGGGGTTCTCTTCACTGCTGGAGAGTATCTCCCTATAA  989

seq1  TAACCAAGATTGACCTGAAACTCACATTCCTCTCTCAGCCTCTGTGAGTC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCAAGATTGACCTGAAACTCACATTCCTCTCTCAGCCTCTGTGAGTC  1039

seq1  ACCATACCTAAACTAGACCGTGTTTCAGACAGCAAGCACTGATGGACATC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATACCTAAACTAGACCGTGTTTCAGACAGCAAGCACTGATGGACATC  1089

seq1  ACCTTTGCTTTGCGGGTACTTCTTATGCATATTTTTGAATGACTATCAAA  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTGCTTTGCGGGTACTTCTTATGCATATTTTTGAATGACTATCAAA  1139

seq1  ATCATGTTTGGGTCTTTTGTTTTTTGATACAGAGGTCTATGAATTC  1192
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGTTTGGGTCTTTTGTTTTTTGATACAGAGGTCTATGAATTC  1185

seq1: chr1_181519857_181520991
seq2: B6Ng01-320B05.g_67_1198

seq1  GAATTCAGATTTGCCTTCCTCTGCCTCTCTAATGCTGGGATTAAAGGTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGATTTGCCTTCCTCTGCCTCTCTAATGCTGGGATTAAAGGTGT  50

seq1  GATCCACCGTGTCAAGCTATTTTCTACTCTTATATTTTGCTTTTTTTGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCACCGTGTCAAGCTATTTTCTACTCTTATATTTTGCTTTTTTTGGG  100

seq1  GGGCGGGGGTCTTTTTACTTAGTCCAAGATGGCTTTAAAGTTCCTACAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCGGGGGTCTTTTTACTTAGTCCAAGATGGCTTTAAAGTTCCTACAAA  150

seq1  GGATGGCCTGGAACCGATTCTCCTGCCTCTGTTTTAAAGCGCTGAGGCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGCCTGGAACCGATTCTCCTGCCTCTGTTTTAAAGCGCTGAGGCAC  200

seq1  AGGAGAGTGCCACTGTGTCCGGCTTAGTTCTTACTCACTGCAACATAGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAGTGCCACTGTGTCCGGCTTAGTTCTTACTCACTGCAACATAGGG  250

seq1  CTGTAAGTAAGCTTTATTAGTGTTTGCCTTTGAAAGTTTTTCTTAAAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAAGTAAGCTTTATTAGTGTTTGCCTTTGAAAGTTTTTCTTAAAAGG  300

seq1  GGGGAGTGCAGGTTTATCTCAATGATCTCCCTCACCTGGCAGTGAGGGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGTGCAGGTTTATCTCAATGATCTCCCTCACCTGGCAGTGAGGGTC  350

seq1  AGGAGCACACCTTGGTTTTTCCCGTCTCCACTGCTTTATATACGGCTAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCACACCTTGGTTTTTCCCGTCTCCACTGCTTTATATACGGCTAGC  400

seq1  GATCTTAGAAGGTAGATGCCCAGAGAAGCCAAAACAAAGCTAGAAATCCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTAGAAGGTAGATGCCCAGAGAAGCCAAAACAAAGCTAGAAATCCG  450

seq1  AGTTTAAGTAACTTGGCAAAAGTACAGGAGATAAGTGTTGGAAGCAGGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTAAGTAACTTGGCAAAAGTACAGGAGATAAGTGTTGGAAGCAGGCC  500

seq1  TGGCTTCTGGATTGTCCATTCTCTGGTTCTTGGGCAAGAAAAGTTCTCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTCTGGATTGTCCATTCTCTGGTTCTTGGGCAAGAAAAGTTCTCTC  550

seq1  CTCTTCTTTCTCTTCCTCCTCTTTCTTCTTCCTCCTTTCCCTTCCTCCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCTTTCTCTTCCTCCTCTTTCTTCTTCCTCCTTTCCCTTCCTCCTC  600

seq1  TTCTTCTTCCTCTTTTTTTCTTCCCTCTTCTTCCTCCTCTTTTTCTTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTTCCTCTTTTTTTCTTCCCTCTTCTTCCTCCTCTTTTTCTTTTT  650

seq1  TTGCTGTGCAAGGAATATGATCCCAGGCCTCATACCATTAAGCAACTCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGTGCAAGGAATATGATCCCAGGCCTCATACCATTAAGCAACTCCC  700

seq1  ACTGCCTCATATTCCTTTCTTTTAAAACAATGTTGTTAATTTTGTGTATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCCTCATATTCCTTTCTTTTAAAACAATGTTGTTAATTTTGTGTATT  750

seq1  TGTGGAGGTCAGACCTCTGTGTCAGGTGTCATCAATTGCTTGTCCACCTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGAGGTCAGACCTCTGTGTCAGGTGTCATCAATTGCTTGTCCACCTA  800

seq1  ATTATTTTACATTTGATTGATTGAGACTGAATTTCAGTCCTGACTTGTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTTACATTTGATTGATTGAGACTGAATTTCAGTCCTGACTTGTTT  850

seq1  TATGCCAACTTGTCCCAAGCTAGAGTCATCAGAGAGGTGGAAACCCTAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCCAACTTGTCCCAAGCTAGAGTCATCAGAGAGGTGGAAACCCTAAT  900

seq1  TGACAAAATGCCTCCGTAAGATGGGGCTGTAGGCAAGACTGTGGGG-TGT  949
      ||||||||||||||||||||||||||||||||||| |||||||||| |||
seq2  TGACAAAATGCCTCCGTAAGATGGGGCTGTAGGCAGGACTGTGGGGTTGT  950

seq1  TCTCGAAATGAGTGATTGAAGTGAGAGGGCCCAGCCTATTGTGGGTGGTG  999
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TCTCGAAATGAGTGATTGAAGTGAGAGGG-CCAGCCTATTGTGGGTGGTG  999

seq1  CCATCCCTGAGCTGGTGATCCTGGGTACTATAAGAAA-GCAGGCT-GAGC  1047
      |||||||||||||||||||||||| |||||||||||| ||||||| ||||
seq2  CCATCCCTGAGCTGGTGATCCTGGTTACTATAAGAAAGGCAGGCTGGAGC  1049

seq1  AAGACACGAGGAGCAACCCAG-TCAGCAGCACCCCTCCATAGCCCTCCAT  1096
      |||||||||| ||||  |||| |||||||   |||| ||||| |||||||
seq2  AAGACACGAGAAGCA--CCAGTTCAGCAGGCACCCT-CATAGGCCTCCAT  1096

seq1  CAACTCCTGCTTCCAGGTTCCT-GCCCTGTTTAGTTCCTG  1135
      | ||| |||||  ||||||||| ||||||||   ||||||
seq2  C-ACT-CTGCT--CAGGTTCCTGGCCCTGTTAGCTTCCTG  1132