BAC Information

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BAC

Clone NameB6Ng01-320C12
Chromosome1 (Build37)
Map Location 25,008,403 - 25,009,463
singlet/doubletsinglet
Overlap genenone
Upstream gene1110058L19Rik, 4921533L14Rik, LOC665808, Col9a1, Col19a1, LOC100040475, LOC665829, Lmbrd1
Downstream gene4930472D16Rik, LOC669171, Bai3, LOC665595
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-320C12.bB6Ng01-320C12.g
ACCGA109602GA109603
length1,1911,081
definitionB6Ng01-320C12.b B6Ng01-320C12.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcactcttgcacctgcgtacaaggcttgtttactagttaggcacaa
cggaggcccgcaccatcttataatggtgattgctcgcagcacgtaccggc
tctccacatctccccctttttattttattaaaatttgaggctggtctagg
cctgtgtaattatgcccatccgttgtggctcctgtcttaggtcgttcctc
caatgtcacagcctttcctgtcatagggtaaccctatcgccaccgggccc
cgtgtcttaggttgatctgtgcatgaggaaagttgcctgtccctggatac
cgcagtgctatgtgacattaactactaaatgacctagggcgaactctata
aaagaggccagccaccaatgtcagttaatttttgagcatagatagccaga
tttcaggggaggccccttgcttgatggcagcaagtgcttgagttatcaca
accttgtcacgtgtttgttgggttctgagcttgcaaaccaaccagagcat
gaccacaagtccacagcaggtggcaacaccaaataaacctacccccaccc
attccttaaaataagaaaagacagatgaaatccaggaggagaggccctct
gtcaatgacaggtccactcgtgtcgagttgatctttagaacggctgctct
cagggcctcaagggtctcatcgaatcattcagaccagtttcttgcaagat
ataaagaaagctgtctagacagattagctgcataagtaaaattttcatat
tggacactggtaatgcacagagcttccagttttctttcacagcccactgg
gccatctggtatagaacacctatctgttcctccgccaggtcaaggcgctg
attcaaaatcatcagccctcccttttaacttggtactagcagaagtttgg
acagtgatggcatcagccagatctgctgaaagctaatttaattttgtgcc
tgattgaaccgcactaaccatagcataccctgcagctgtagcagcagctg
cactggctgaaattgctatgatcacgcagcagtaatgccaaattttcttc
ttttttgtcgaaacatagattagttggaggtgtttccaccagacaaggat
tcatgtgggaatccgtgcaacattgattccacggtgttcttgttacatcc
acattgagaaattcaccaagaaattcattgtggtgaccgac
gaattccctcatagccagcagggggaagggggcgggataggggagttctt
gggggaggggactgtgaaaggggttaacattagaaataaataaagaaaat
atttaataaaaaatatctaagaaagaaaaaaaagactgatcatagaccta
agtagcacatgtgcacaagtgtcataggaaagggacctagtttgcccaaa
ggacagtttctcactcaccatgagttgatttgtctgacaattgctaaaat
ttaagggcggaagataatcagtcaatcagccaagcaagaagaggataaaa
aaacagatcgggtgcttgcaaagcactaaaaaagtgaatttaatattctc
ctgccacatgcaaaagatgagagatgagaattgaaagatatattaattgt
tacaccaggtgaccattgcacttcctgtatgcaattgaaaaaaaaacaac
aaaaaaacagaaatttcaggtcagaagtgagacgtgcttcagcacggtga
aaatcataactgttcatcacaatcaatgacaagtaacatcagtgtgtggt
taaggtggtggccatgaggttttacagttcctaaaaggtttgggtgtaat
catcttgaataaatgggaaaagggcattaaaaaaaaagaagaaggaaatt
aaactttcttcaataaagcttgacaggaaattccaccaattcagaagtag
ctgacacacacccttccagggtgaggactttggcaggggagggggagaca
tggatgttgccagctccatagtccaaccgttgaattaatgctgttttata
ttaattaaacttattgccagaagtacccactacaaataggttttctttct
ttataatagtctcgggaaaagataagttgtgagccagcaatatcccattt
aaatttgatttctgagggaaaaaaaaaaaggtcgtttaaattaacaactc
ccaaaactgggagaatttttctttgggaatttactcgttggatttttata
ggtagtttaataaatttagttggagcatagtacaatatttttaaataaaa
aaatgaattctcgtatgaaggtctaataaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_25008403_25009463
seq2: B6Ng01-320C12.g_67_1147 (reverse)

seq1  GTTTA-TAGA-CTTCATACAGGAATTCATTTTT---ATTAAAAATATGTT  45
      ||||| |||| ||||||||  ||||||||||||    ||||||||||  |
seq2  GTTTATTAGACCTTCATACGAGAATTCATTTTTTTATTTAAAAATATTGT  50

seq1  ACTATTGCTCCAACT-AATTTA-TAAACTACCTAT-AAAATCCAACGAGT  92
      |||| |||||||||| |||||| |||||||||||| ||||||||||||||
seq2  ACTA-TGCTCCAACTAAATTTATTAAACTACCTATAAAAATCCAACGAGT  99

seq1  AAAT--CCAAAGAAAAA-TCT-CCAGTTTT-GGAGT--GTAATTT-AACG  134
      ||||  ||||||||||| ||| |||||||| |||||   |||||| ||||
seq2  AAATTCCCAAAGAAAAATTCTCCCAGTTTTGGGAGTTGTTAATTTAAACG  149

seq1  ACC-TTTTTTTTTTCCCTCAGAAATCAA--TTTAATGGGATATTGCTGGC  181
      ||| ||||||||||||||||||||||||  || |||||||||||||||||
seq2  ACCTTTTTTTTTTTCCCTCAGAAATCAAATTTAAATGGGATATTGCTGGC  199

seq1  TCAC-ACTTATCTTTTCCCGAGACTATTATAAAGAAAGAAAACCTATTTG  230
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAACTTATCTTTTCCCGAGACTATTATAAAGAAAGAAAACCTATTTG  249

seq1  TAGTGGGTACTTCTGGCAATAAGTTTAATTAATATAAAACAGCATTAATT  280
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGGGTACTTCTGGCAATAAGTTTAATTAATATAAAACAGCATTAATT  299

seq1  CAACGGTTGGACTATGGAGCTGGCAACATCCATGTCTCCCCCTCCCCTGC  330
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACGGTTGGACTATGGAGCTGGCAACATCCATGTCTCCCCCTCCCCTGC  349

seq1  CAAAGTCCTCACCCTGGAAGGGTGTGTGTCAGCTACTTCTGAATTGGTGG  380
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTCCTCACCCTGGAAGGGTGTGTGTCAGCTACTTCTGAATTGGTGG  399

seq1  AATTTCCTGTCAAGCTTTATTGAAGAAAGTTTAATTTCCTTCTTCTTTTT  430
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCCTGTCAAGCTTTATTGAAGAAAGTTTAATTTCCTTCTTCTTTTT  449

seq1  TTTTAATGCCCTTTTCCCATTTATTCAAGATGATTACACCCAAACCTTTT  480
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATGCCCTTTTCCCATTTATTCAAGATGATTACACCCAAACCTTTT  499

seq1  AGGAACTGTAAAACCTCATGGCCACCACCTTAACCACACACTGATGTTAC  530
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACTGTAAAACCTCATGGCCACCACCTTAACCACACACTGATGTTAC  549

seq1  TTGTCATTGATTGTGATGAACAGTTATGATTTTCACCGTGCTGAAGCACG  580
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCATTGATTGTGATGAACAGTTATGATTTTCACCGTGCTGAAGCACG  599

seq1  TCTCACTTCTGACCTGAAATTTCTGTTTTTTTGTTGTTTTTTTTTCAATT  630
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACTTCTGACCTGAAATTTCTGTTTTTTTGTTGTTTTTTTTTCAATT  649

seq1  GCATACAGGAAGTGCAATGGTCACCTGGTGTAACAATTAATATATCTTTC  680
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATACAGGAAGTGCAATGGTCACCTGGTGTAACAATTAATATATCTTTC  699

seq1  AATTCTCATCTCTCATCTTTTGCATGTGGCAGGAGAATATTAAATTCACT  730
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTCATCTCTCATCTTTTGCATGTGGCAGGAGAATATTAAATTCACT  749

seq1  TTTTTAGTGCTTTGCAAGCACCCGATCTGTTTTTTTATCCTCTTCTTGCT  780
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAGTGCTTTGCAAGCACCCGATCTGTTTTTTTATCCTCTTCTTGCT  799

seq1  TGGCTGATTGACTGATTATCTTCCGCCCTTAAATTTTAGCAATTGTCAGA  830
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGATTGACTGATTATCTTCCGCCCTTAAATTTTAGCAATTGTCAGA  849

seq1  CAAATCAACTCATGGTGAGTGAGAAACTGTCCTTTGGGCAAACTAGGTCC  880
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCAACTCATGGTGAGTGAGAAACTGTCCTTTGGGCAAACTAGGTCC  899

seq1  CTTTCCTATGACACTTGTGCACATGTGCTACTTAGGTCTATGATCAGTCT  930
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCTATGACACTTGTGCACATGTGCTACTTAGGTCTATGATCAGTCT  949

seq1  TTTTTTTCTTTCTTAGATATTTTTTATTAAATATTTTCTTTATTTATTTC  980
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTCTTTCTTAGATATTTTTTATTAAATATTTTCTTTATTTATTTC  999

seq1  TAATGTTAACCCCTTTCACAGTCCCCTCCCCCAAGAACTCCCCTATCCCG  1030
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTTAACCCCTTTCACAGTCCCCTCCCCCAAGAACTCCCCTATCCCG  1049

seq1  CCCCCTTCCCCCTGCT-TCTATGAGGGAATTC  1061
      ||||||||||||||||  ||||||||||||||
seq2  CCCCCTTCCCCCTGCTGGCTATGAGGGAATTC  1081