BAC Information

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BAC

Clone NameB6Ng01-320F08
Chromosome3 (Build37)1 (Build37)
Map Location 34,657,787 - 34,658,93330,947,221 - 30,947,298
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneTtc14, Ccdc39, LOC100040232, LOC100041072, Fxr1h, Dnajc19, LOC435727, EG665636, EG622074, Sox2, LOC100041108
Downstream geneLOC665655, Ube2l3-ps1, LOC625963, Atp11b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-320F08.bB6Ng01-320F08.g
ACCGA109728GA109729
length1,142525
definitionB6Ng01-320F08.b B6Ng01-320F08.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(34,657,787 - 34,658,933)(30,947,221 - 30,947,298)
sequence
gaattcttatcatctgtctcctaggcaagcatacttactacccactaggc
tattttgccaaccatgaaatgaagatgttaattaaggttgttgatacatt
ttgttttgttttgttttcaaacacttctctctctgtagctcaggctgtcc
tggaactcaccaggctggccccaaactcaaaacaatcagcttccagagtc
gggattacaggtttgagccatagcatctggccaaggaatgatacattgaa
ctaagatcatttaggtatatatttgatcacgagaagaactattattaaca
ataaagaccattcatgccaggggaaccttgacaatcaggagtttgagatc
attcacaaaatactttattccatctactggattgattttttgggggtgtt
ttcaagacagggtttctctgtgcatcccggcctgtcctggaactcaatct
gtagactagcatggcctcaattatttaatatccagtgctggaattaaagg
tgtgtgtcaccatgacccgtcccatccactgtattaagggctttactggc
cttgagctcactattgaagcccagcctacctcgaactcacggtaatcctc
ttgctccatcttcttgagtactgggatgacaagcaagcactaccatatcc
aagattgttttcactcactcactcattcgttcattcattcattaattcgt
tcaacagatacatatttactggacacagtactgaacagggttgggagggt
aaagtggtaagagagactgacagcgtgtgaggagtactgcgaatgtattc
tgccaggtgagcccatgccatgaactgtggttctgggggttaacccaagg
cctccagcgtgctaagccaacacaccaccagtgagtggcatccccattcg
ttatataagtttcttgctgtgtaaggcagggtctcaataagtgggttcgt
gcaggcccggggtttcctgatcttctttgcccaagtggctgctgtgccca
gcatgtgggccaatttattttcctactttttccaggatgccgcagatgca
ggaactatctttggtgtttctgtcttctggctgctcaccgcagttcgcta
caaacagccttgtgcactttgtttgcagtgttgagactgatc
acttaaaagtttgaaagggggtcggcttattggattggctcacactatcc
aggatgggtagtccaacaatggagtctgggtgccatggagactggtcacc
cggttgtctctctgtaagaccagataccatgagtaccagtgtgctcagaa
aggtctgaaggatgccttgggagccacaggtcttcagttgaagttgcaaa
cctgaagaagcttggttggctggtgccagccagcaacagactagatacca
tcaccaggagcaggtgaaggtgggcatggaaggaaccctgcgtctccctc
tttgtttctgggctacagccagaagatgctgccaattctcacacagggtc
ttcccctttcagtattcatcctttgaaagaaagaaaggaagaaagaaaga
gagagagagagagagagagagagagagagagagaaagagagagagagaga
aagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaa
gaaagaaagaaatagaggagagaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_34657787_34658933
seq2: B6Ng01-320F08.b_44_1185

seq1  GAATTCTTATCATCTGTCTCCTAGGCAAGCATACTTACTACCCACTAGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTATCATCTGTCTCCTAGGCAAGCATACTTACTACCCACTAGGC  50

seq1  TATTTTGCCAACCATGAAATGAAGATGTTAATTAAGGTTGTTGATACATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTGCCAACCATGAAATGAAGATGTTAATTAAGGTTGTTGATACATT  100

seq1  TTGTTTTGTTTTGTTTTCAAACACTTCTCTCTCTGTAGCTCAGGCTGTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTGTTTTGTTTTCAAACACTTCTCTCTCTGTAGCTCAGGCTGTCC  150

seq1  TGGAACTCACCAGGCTGGCCCCAAACTCAAAACAATCAGCTTCCAGAGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACTCACCAGGCTGGCCCCAAACTCAAAACAATCAGCTTCCAGAGTC  200

seq1  GGGATTACAGGTTTGAGCCATAGCATCTGGCCAAGGAATGATACATTGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTACAGGTTTGAGCCATAGCATCTGGCCAAGGAATGATACATTGAA  250

seq1  CTAAGATCATTTAGGTATATATTTGATCACGAGAAGAACTATTATTAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGATCATTTAGGTATATATTTGATCACGAGAAGAACTATTATTAACA  300

seq1  ATAAAGACCATTCATGCCAGGGGAACCTTGACAATCAGGAGTTTGAGATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGACCATTCATGCCAGGGGAACCTTGACAATCAGGAGTTTGAGATC  350

seq1  ATTCACAAAATACTTTATTCCATCTACTGGATTGATTTTTTGGGGGTGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACAAAATACTTTATTCCATCTACTGGATTGATTTTTTGGGGGTGTT  400

seq1  TTCAAGACAGGGTTTCTCTGTGCATCCCGGCCTGTCCTGGAACTCAATCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGACAGGGTTTCTCTGTGCATCCCGGCCTGTCCTGGAACTCAATCT  450

seq1  GTAGACTAGCATGGCCTCAATTATTTAATATCCAGTGCTGGAATTAAAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGACTAGCATGGCCTCAATTATTTAATATCCAGTGCTGGAATTAAAGG  500

seq1  TGTGTGTCACCATGACCCGTCCCATCCACTGTATTAAGGGCTTTACTGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTCACCATGACCCGTCCCATCCACTGTATTAAGGGCTTTACTGGC  550

seq1  CTTGAGCTCACTATTGAAGCCCAGCCTACCTCGAACTCACGGTAATCCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGCTCACTATTGAAGCCCAGCCTACCTCGAACTCACGGTAATCCTC  600

seq1  TTGCTCCATCTTCTTGAGTACTGGGATGACAAGCAAGCACTACCATATCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCCATCTTCTTGAGTACTGGGATGACAAGCAAGCACTACCATATCC  650

seq1  AAGATTGTTTTCACTCACTCACTCATTCGTTCATTCATTCATTAATTCGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTGTTTTCACTCACTCACTCATTCGTTCATTCATTCATTAATTCGT  700

seq1  TCAACAGATACATATTTACTGGACACAGTACTGAACAGGGTTGGGAGGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACAGATACATATTTACTGGACACAGTACTGAACAGGGTTGGGAGGGT  750

seq1  AAAGTGGTAAGAGAGACTGACAGCGTGTGAGGAGTACTGCGAATGTATTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGGTAAGAGAGACTGACAGCGTGTGAGGAGTACTGCGAATGTATTC  800

seq1  TGCCAGGTGAGCCCATGCCATGAACTGTGGTTCTGGGGGTTAACCCAAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGGTGAGCCCATGCCATGAACTGTGGTTCTGGGGGTTAACCCAAGG  850

seq1  CCTCCAGCGTGCTAAGCCAACACACCACCAGTGAGTGGCATCCCCATTCG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCAGCGTGCTAAGCCAACACACCACCAGTGAGTGGCATCCCCATTCG  900

seq1  TTATATAAGTTTCTTGCTGTGTAAGGCAGGGTCTCAATAAGT-GGTTCGT  949
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TTATATAAGTTTCTTGCTGTGTAAGGCAGGGTCTCAATAAGTGGGTTCGT  950

seq1  GCAGGCCCGGGGTTTCCTGATCT--CTTGCCCAAGTGGCTGCTGTGCCCA  997
      |||||||||||||||||||||||   ||||||||||||||||||||||||
seq2  GCAGGCCCGGGGTTTCCTGATCTTCTTTGCCCAAGTGGCTGCTGTGCCCA  1000

seq1  GCATGTGGGCCCAATTTATTTTCCTACTTTTTCCAGGATG-CGCAGATGC  1046
      ||||||||| |||||||||||||||||||||||||||||| |||||||||
seq2  GCATGTGGG-CCAATTTATTTTCCTACTTTTTCCAGGATGCCGCAGATGC  1049

seq1  AGGAACTATCTTTGGTGTTTCTGTCTTTCTGCCTGCTCACCGCAGTTTCC  1096
      ||||||||||||||||||||||||| ||||| |||||||||||||||  |
seq2  AGGAACTATCTTTGGTGTTTCTGTC-TTCTGGCTGCTCACCGCAGTT--C  1096

seq1  GCTAACAAAACAAGCCTTTGTGCACTTTGTTTGCAGTGTTGAGAACTGAT  1146
      ||| |||||   |||| |||||||||||||||||||||||||| ||||||
seq2  GCT-ACAAA--CAGCC-TTGTGCACTTTGTTTGCAGTGTTGAG-ACTGAT  1141

seq1  C  1147
      |
seq2  C  1142

seq1: chr1_30947221_30947298
seq2: B6Ng01-320F08.g_518_595 (reverse)

seq1  CTTCTCTCCTCTATTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCTCCTCTATTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCT  50

seq1  TTCTTTCTTTCTTTCTTTCTTTCTTTCT  78
      ||||||||||||||||||||||||||||
seq2  TTCTTTCTTTCTTTCTTTCTTTCTTTCT  78