BAC Information

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BAC

Clone NameB6Ng01-320N05
Chromosome1 (Build37)
Map Location 29,817,915 - 29,963,499
singlet/doubletdoublet
Overlap genenone
Upstream geneGm597, LOC435614, EG623924, EG433283, LOC100040665
Downstream geneLOC665944, EG624138, LOC100040699, Phf3, EG638995
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-320N05.bB6Ng01-320N05.g
ACCGA110094GA110095
length1,152984
definitionB6Ng01-320N05.b B6Ng01-320N05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,962,346 - 29,963,499)(29,817,915 - 29,818,531)
sequence
gaattccaggaactctctaattgatctttaggatcctgatatgtcagtag
gatttaaaaagaagtcaaaagatgtgaaacaaagcatcaactttaccagg
catcttctgccacccatcatctcaggtccaaatctggcttccaggtcagt
gtttgctacaagatcacctgacaagttgtcagccttttttcaggggacaa
gttcctcccctgaatgcctcatgcagcttcaatggtttcctatctcagaa
agagatccctggggatgctttttgtttgttggtgtccattctttcagtag
ccttaacagccaaaagcagaatataaatgtctccttagagtacatcaatt
catgtcagacaaggcggttcagagaagaggaagccttgaaacacacagcc
attagtacgtctgacaatattaactagaagtaatgtagaatggctcagac
cacatggaaaacaagcatctgatgactttttgttaaatatcaaaatgttc
aggctttgtaacacccagcaggatgtaatggaagaggtttaataaaaatc
acatgttggaaaggacaatttccattttcctctccatagatgtgaaaaat
caatgcatgcataatattatttattacactaaaatattccctaggaaaat
attaatattcattagatatacttgctttcttgcttacttttgtcttgcca
caggcaaaaagaaaatcatatgctctcagagttgcaaagttaaataattc
ttaattattacatactttaaagaaaatgaaagcatacaaatttaaacaaa
tttattcaccacttagtaacttttaaaaactatggtatgtaaaaaaaaaa
aaaaaaaagagagacaacttggtaactttgttctctgaagtatgattatt
tgcttgctgttcaatgttggggtacaatcatatattgcttttattatctt
tttaaaaatgcttagaaccttcaaaggtgaaaatacccaggtgctgaatc
tactaattgtaagtttttcttgataaagctgaaagcttctactagagagc
aggtgtctctgaattctaactcctgcctacctagaatcacttcacttgca
ttccatcaccatttactttggaagtagaaagttgaaaacaaggcttgtca
ca

gaattcataacactaaagaatgtaaggttacccatttatcaggaagtggt
gctgggccaaaatcctcaaaactctctcctattgaaatttctccataata
agggaaacaaactttcagtcaggagccatctaagaaaggctaaggactag
caggtgatcttgatttcactatggattttggattgctatgaatgtgctct
tgcaggtaaggcccaagtgatgacattttcaggatttgacttctgatatg
aattttctgtcactaaactaaatagcaacccctgggcattaccctactct
attgaccagatgttctgcagctcaatgaaggtgtacagtcttgtagttgt
gatatacagacaaatagatgattttgtaattcctaaaggtaattccataa
gaatttctataattataatactcactttaaaccccttataatcagactcc
tatcaaaacccccctctgatatgaaaactaaaattagaactctgccatca
ctatgatttaattgcttctgagatagctggtatttacaacttagaatact
ttcctgtgcactgtaaaacaagtaaccaaaggtcataaaatggaacaaac
tatttattgtaggtgcatggatagaagttaaactatttattttggtttat
atatacaaaacttgcaatgataacttagacacaagaattgtaattttaga
ctcaatgaacctgtggagctagagacagataatcaatgtcaagctagata
actagtctttatggaaacacatgtaaacatctctgctctaaaattgctat
tcgattttcttatttgagtttgtttttagatgggtggtgaacttttgata
ataggaatatgtggaaatgtgatcatgtgtccttgggaacgtactaaatc
tagggaatgatggcttttaagtatgcagaaagcaggaaagctgaaagaga
tttagaaactaaggcagaattgtagagtacaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_29962346_29963499
seq2: B6Ng01-320N05.b_49_1200 (reverse)

seq1  TGTGACAAGCCTTTGTTTTCCAACTTTTCTACCTTC-AAGTTAATGGTGA  49
      ||||||||||| ||||||| |||| ||||||| | | |||| ||||||| 
seq2  TGTGACAAGCC-TTGTTTT-CAAC-TTTCTACTTCCAAAGTAAATGGTG-  46

seq1  ATTGAATGC-AGTGAAGTGAATCTAGGTA-GCAGGAGGTAGGATTTCAGA  97
      || |||||| |||||||||| |||||||| ||||||| || || ||||||
seq2  ATGGAATGCAAGTGAAGTGATTCTAGGTAGGCAGGAGTTA-GAATTCAGA  95

seq1  GACACCTGCTCTCTAGTAG-AGCTTTCCAGCTTTATCA--GAAAACTTAC  144
      ||||||||||||||||||| |||||| |||||||||||   |||||||||
seq2  GACACCTGCTCTCTAGTAGAAGCTTT-CAGCTTTATCAAGAAAAACTTAC  144

seq1  AATTTAGTAGATTCAGCACCTGGGTATTTTCACCTTTGAAGGTTCTAAGC  194
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AA-TTAGTAGATTCAGCACCTGGGTATTTTCACCTTTGAAGGTTCTAAGC  193

seq1  ATTTTTTAAAAAGATAATAAAAGCAATATATGATTGTACCCCAACATTGA  244
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  A-TTTTTAAAAAGATAATAAAAGCAATATATGATTGTACCCCAACATTGA  242

seq1  ACAGCAAGCAAATAATCATACTTCAGAGAACAAAGTTACCAAGTTGTCTC  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAAGCAAATAATCATACTTCAGAGAACAAAGTTACCAAGTTGTCTC  292

seq1  TCTTTTTTTTTTTTTTTTTTACATACCATAGTTTTTAAAAGTTACTAAGT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTTTTTTTTTTTTTTACATACCATAGTTTTTAAAAGTTACTAAGT  342

seq1  GGTGAATAAATTTGTTTAAATTTGTATGCTTTCATTTTCTTTAAAGTATG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAATAAATTTGTTTAAATTTGTATGCTTTCATTTTCTTTAAAGTATG  392

seq1  TAATAATTAAGAATTATTTAACTTTGCAACTCTGAGAGCATATGATTTTC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAATTAAGAATTATTTAACTTTGCAACTCTGAGAGCATATGATTTTC  442

seq1  TTTTTGCCTGTGGCAAGACAAAAGTAAGCAAGAAAGCAAGTATATCTAAT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGCCTGTGGCAAGACAAAAGTAAGCAAGAAAGCAAGTATATCTAAT  492

seq1  GAATATTAATATTTTCCTAGGGAATATTTTAGTGTAATAAATAATATTAT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATTAATATTTTCCTAGGGAATATTTTAGTGTAATAAATAATATTAT  542

seq1  GCATGCATTGATTTTTCACATCTATGGAGAGGAAAATGGAAATTGTCCTT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCATTGATTTTTCACATCTATGGAGAGGAAAATGGAAATTGTCCTT  592

seq1  TCCAACATGTGATTTTTATTAAACCTCTTCCATTACATCCTGCTGGGTGT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAACATGTGATTTTTATTAAACCTCTTCCATTACATCCTGCTGGGTGT  642

seq1  TACAAAGCCTGAACATTTTGATATTTAACAAAAAGTCATCAGATGCTTGT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAGCCTGAACATTTTGATATTTAACAAAAAGTCATCAGATGCTTGT  692

seq1  TTTCCATGTGGTCTGAGCCATTCTACATTACTTCTAGTTAATATTGTCAG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCATGTGGTCTGAGCCATTCTACATTACTTCTAGTTAATATTGTCAG  742

seq1  ACGTACTAATGGCTGTGTGTTTCAAGGCTTCCTCTTCTCTGAACCGCCTT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTACTAATGGCTGTGTGTTTCAAGGCTTCCTCTTCTCTGAACCGCCTT  792

seq1  GTCTGACATGAATTGATGTACTCTAAGGAGACATTTATATTCTGCTTTTG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGACATGAATTGATGTACTCTAAGGAGACATTTATATTCTGCTTTTG  842

seq1  GCTGTTAAGGCTACTGAAAGAATGGACACCAACAAACAAAAAGCATCCCC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTAAGGCTACTGAAAGAATGGACACCAACAAACAAAAAGCATCCCC  892

seq1  AGGGATCTCTTTCTGAGATAGGAAACCATTGAAGCTGCATGAGGCATTCA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATCTCTTTCTGAGATAGGAAACCATTGAAGCTGCATGAGGCATTCA  942

seq1  GGGGAGGAACTTGTCCCCTGAAAAAAGGCTGACAACTTGTCAGGTGATCT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGGAACTTGTCCCCTGAAAAAAGGCTGACAACTTGTCAGGTGATCT  992

seq1  TGTAGCAAACACTGACCTGGAAGCCAGATTTGGACCTGAGATGATGGGTG  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCAAACACTGACCTGGAAGCCAGATTTGGACCTGAGATGATGGGTG  1042

seq1  GCAGAAGATGCCTGGTAAAGTTGATGCTTTGTTTCACATCTTTTGACTTC  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAGATGCCTGGTAAAGTTGATGCTTTGTTTCACATCTTTTGACTTC  1092

seq1  TTTTTAAATCCTACTGACATATCAGGATCCTAAAGATCAATTAGAGAGTT  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAATCCTACTGACATATCAGGATCCTAAAGATCAATTAGAGAGTT  1142

seq1  CCTGGAATTC  1154
      ||||||||||
seq2  CCTGGAATTC  1152


seq1: chr1_29817915_29818531
seq2: B6Ng01-320N05.g_67_683

seq1  GAATTCATAACACTAAAGAATGTAAGGTTACCCATTTATCAGGAAGTGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAACACTAAAGAATGTAAGGTTACCCATTTATCAGGAAGTGGT  50

seq1  GCTGGGCCAAAATCCTCAAAACTCTCTCCTATTGAAATTTCTCCATAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGCCAAAATCCTCAAAACTCTCTCCTATTGAAATTTCTCCATAATA  100

seq1  AGGGAAACAAACTTTCAGTCAGGAGCCATCTAAGAAAGGCTAAGGACTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAACAAACTTTCAGTCAGGAGCCATCTAAGAAAGGCTAAGGACTAG  150

seq1  CAGGTGATCTTGATTTCACTATGGATTTTGGATTGCTATGAATGTGCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGATCTTGATTTCACTATGGATTTTGGATTGCTATGAATGTGCTCT  200

seq1  TGCAGGTAAGGCCCAAGTGATGACATTTTCAGGATTTGACTTCTGATATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGTAAGGCCCAAGTGATGACATTTTCAGGATTTGACTTCTGATATG  250

seq1  AATTTTCTGTCACTAAACTAAATAGCAACCCCTGGGCATTACCCTACTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTCTGTCACTAAACTAAATAGCAACCCCTGGGCATTACCCTACTCT  300

seq1  ATTGACCAGATGTTCTGCAGCTCAATGAAGGTGTACAGTCTTGTAGTTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGACCAGATGTTCTGCAGCTCAATGAAGGTGTACAGTCTTGTAGTTGT  350

seq1  GATATACAGACAAATAGATGATTTTGTAATTCCTAAAGGTAATTCCATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATACAGACAAATAGATGATTTTGTAATTCCTAAAGGTAATTCCATAA  400

seq1  GAATTTCTATAATTATAATACTCACTTTAAACCCCTTATAATCAGACTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTCTATAATTATAATACTCACTTTAAACCCCTTATAATCAGACTCC  450

seq1  TATCAAAACCCCCCTCTGATATGAAAACTAAAATTAGAACTCTGCCATCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAAAACCCCCCTCTGATATGAAAACTAAAATTAGAACTCTGCCATCA  500

seq1  CTATGATTTAATTGCTTCTGAGATAGCTGGTATTTACAACTTAGAATACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGATTTAATTGCTTCTGAGATAGCTGGTATTTACAACTTAGAATACT  550

seq1  TTCCTGTGCACTGTAAAACAAGTAACCAAAGGTCATAAAATGGAACAAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGTGCACTGTAAAACAAGTAACCAAAGGTCATAAAATGGAACAAAC  600

seq1  TATTTATTGTAGGTGCA  617
      |||||||||||||||||
seq2  TATTTATTGTAGGTGCA  617


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