BAC Information

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BAC

Clone NameB6Ng01-320O21
Chromosome1 (Build37)
Map Location 84,869,970 - 84,871,081
singlet/doubletsinglet
Overlap geneFbxo36
Upstream gene5033414K04Rik, LOC100039638, Dner, Trip12
Downstream geneSlc16a14, LOC100039695, EG665317, LOC100039723, A530032D15Rik, LOC100039742, LOC100040158, LOC621835, EG665378, C130026I21Rik, LOC100040135, LOC639868
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-320O21.bB6Ng01-320O21.g
ACCGA110172GA110173
length1,1291,174
definitionB6Ng01-320O21.b B6Ng01-320O21.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcctggaactcactctgtagaccaggctggcctctgactcagatct
gtttggccctgcttcctgagtgcagggatgaaaggcctgcgccacctcag
ctcagctttacactttagtttttaaagctgcgctttccacagccagctcc
tcccactttcttgccttgagccttctggttagtgcagccaaacatattgt
ttatgtagaagtctgctcaaagtgtattaaagaattagagggcccagcct
cctcttgattgactctgttaggtagacaggtaatttgcaggcttggtggc
caccaacaatggactctctctggtaattgctgtcctctaactagatttct
cccccctctctgggaccacttttttcttcctagtttacctcagacactag
gacttagaaaccctgggggcttagtttctctgtatcaaagccgcctcctc
tcacaaacagtggtgattacctgctgacaagacctccctccctctccagc
ccaccaaccccagcccagtaccagcagaagcagagtttgaagaggaaagc
cccatctcagctggacaaagactactgaccacccagcctctgcatctaga
gacaaaagtctgcttcaggtgatacaagagaaaatgggaggggtgtgtgt
gctatctggtgctccccaagtcactcagcagcagcctggccgtatacacc
ccagttcccacttcccacttctcactctatcccagcggttcatccttggc
tataatagcaaattcaaaactagtgtgggctataggagaccctgtctaaa
aacaaggtgaaacaaaaatcattttaaaaaaaaaagaaagaagtctcagt
cagttctacacagagaaaaccttgtcttaaaaacaaacaaacaaacaaac
caaagttttaaaaagataaaataaaaaaatttatttaaaaaagaattatt
aaagactcttccgccgggcgtgtggtgcatgcctttaatcccagcacttt
gggaggcagaggcaggcggattctgagttgagccagcctggtcctgcaga
gtggagttcaaggactgccaaggcctaccacagagaaacctgttctctgt
tctcgaaaagatccaatactaaaacaaaa
gaattctcacctgaggaataccgaatggcagagaagcacttgaaaaaatg
ttcaacattcttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggagtgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaactggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaacaggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacctagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
gaaactcacacaatatgtattcactgataagtggatattagccccaaacc
taggatacccaagatataagatataatttgctaaacacatgaaactcaag
gagaatgaagactgaagtgtggacactatgcccctccttagatttgggaa
caaaacacccatggaaggagttacagagacggagtttggagctgagatga
aaggatggaccatgtagagactgccatagccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagattttattgaaa
ggacgcagatgtagctgtctcttgtgagactatgccggggccccagcaaa
cacagaagtggatgctcacagtcagctaatggatggatcatagggctccc
aatggaggagctagagaaagtagccaaggagctaaaggatctgcacctat
aggtggaacaacattatgagctaccagtaccccgagctcttgactctagc
tgcataatatatcaaaagatggtctagtcggccatcactggaagagagag
gctcaatggacttgcacttatatggtcctagtacaggaaataccatggct
aaaaagggggaatatgtgctgtgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_84869970_84871081
seq2: B6Ng01-320O21.b_49_1177 (reverse)

seq1  TTTTGTTTT-----------TTTTCGAGACAGGAGACAGGGTTTCTCTGT  39
      |||||||||           |||||||||   ||||   |||||||||||
seq2  TTTTGTTTTAGTATTGGATCTTTTCGAGAACAGAGAACAGGTTTCTCTGT  50

seq1  -GTA-GCCCTGGCTGTCCTGGAACT-CACTCTGCA-GACCAGGCTGGCCT  85
       ||| ||| |||| ||||| ||||| ||||||||| ||||||||||| ||
seq2  GGTAGGCCTTGGCAGTCCTTGAACTCCACTCTGCAGGACCAGGCTGG-CT  99

seq1  CAAACTCAGAAATCCGCCTGCCTCTGCCTCCC-AAGTGCTGGGATTAAAG  134
      | ||||||| |||||||||||||||||||||| |||||||||||||||||
seq2  C-AACTCAG-AATCCGCCTGCCTCTGCCTCCCAAAGTGCTGGGATTAAAG  147

seq1  GCATGCACCACCACGCCCGGCGG-AGAGTCTTTTATTATTCTTTTTTTAA  183
      |||||||||| |||||||||||| ||||||||| || |||| ||||||||
seq2  GCATGCACCA-CACGCCCGGCGGAAGAGTCTTTAATAATTC-TTTTTTAA  195

seq1  TTAAATTTTTTATTTTTATCTTTTT-AAACTTT-GTTTGTTTGTTTGTTT  231
       ||||||||||  |||||||||||| ||||||| ||||||||||||||||
seq2  ATAAATTTTTTTATTTTATCTTTTTAAAACTTTGGTTTGTTTGTTTGTTT  245

seq1  GTTTTTAAGACAAGG-TTTCTCTGTGTAGAACTGGCTGAGACTTC-TTCT  279
      ||||||||||||||| |||||||||||||||||| |||||||||| ||||
seq2  GTTTTTAAGACAAGGTTTTCTCTGTGTAGAACTGACTGAGACTTCTTTCT  295

seq1  TTTTTTTTT-AAATGATTTTTGTTTCACCTTGTTTTTAGACAGGGTCTCC  328
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTAAAATGATTTTTGTTTCACCTTGTTTTTAGACAGGGTCTCC  345

seq1  TATAGCCCACACTAGTTTTGAATTTGCTATTATAGCCAAGGATGAACCGC  378
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGCCCACACTAGTTTTGAATTTGCTATTATAGCCAAGGATGAACCGC  395

seq1  TGGGATAGAGTGAGAAGTGGGAAGTGGGAACTGGGGTGTATACGGCCAGG  428
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATAGAGTGAGAAGTGGGAAGTGGGAACTGGGGTGTATACGGCCAGG  445

seq1  CTGCTGCTGAGTGACTTGGGGAGCACCAGATAGCACACACACCCCTCCCA  478
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGCTGAGTGACTTGGGGAGCACCAGATAGCACACACACCCCTCCCA  495

seq1  TTTTCTCTTGTATCACCTGAAGCAGACTTTTGTCTCTAGATGCAGAGGCT  528
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCTTGTATCACCTGAAGCAGACTTTTGTCTCTAGATGCAGAGGCT  545

seq1  GGGTGGTCAGTAGTCTTTGTCCAGCTGAGATGGGGCTTTCCTCTTCAAAC  578
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGTCAGTAGTCTTTGTCCAGCTGAGATGGGGCTTTCCTCTTCAAAC  595

seq1  TCTGCTTCTGCTGGTACTGGGCTGGGGTTGGTGGGCTGGAGAGGGAGGGA  628
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTTCTGCTGGTACTGGGCTGGGGTTGGTGGGCTGGAGAGGGAGGGA  645

seq1  GGTCTTGTCAGCAGGTAATCACCACTGTTTGTGAGAGGAGGCGGCTTTGA  678
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTGTCAGCAGGTAATCACCACTGTTTGTGAGAGGAGGCGGCTTTGA  695

seq1  TACAGAGAAACTAAGCCCCCAGGGTTTCTAAGTCCTAGTGTCTGAGGTAA  728
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAGAAACTAAGCCCCCAGGGTTTCTAAGTCCTAGTGTCTGAGGTAA  745

seq1  ACTAGGAAGAAAAAAGTGGTCCCAGAGAGGGGGGAGAAATCTAGTTAGAG  778
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGGAAGAAAAAAGTGGTCCCAGAGAGGGGGGAGAAATCTAGTTAGAG  795

seq1  GACAGCAATTACCAGAGAGAGTCCATTGTTGGTGGCCACCAAGCCTGCAA  828
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCAATTACCAGAGAGAGTCCATTGTTGGTGGCCACCAAGCCTGCAA  845

seq1  ATTACCTGTCTACCTAACAGAGTCAATCAAGAGGAGGCTGGGCCCTCTAA  878
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACCTGTCTACCTAACAGAGTCAATCAAGAGGAGGCTGGGCCCTCTAA  895

seq1  TTCTTTAATACACTTTGAGCAGACTTCTACATAAACAATATGTTTGGCTG  928
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTAATACACTTTGAGCAGACTTCTACATAAACAATATGTTTGGCTG  945

seq1  CACTAACCAGAAGGCTCAAGGCAAGAAAGTGGGAGGAGCTGGCTGTGGAA  978
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAACCAGAAGGCTCAAGGCAAGAAAGTGGGAGGAGCTGGCTGTGGAA  995

seq1  AGCGCAGCTTTAAAAACTAAAGTGTAAAGCTGAGCTGAGGTGGCGCAGGC  1028
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGCAGCTTTAAAAACTAAAGTGTAAAGCTGAGCTGAGGTGGCGCAGGC  1045

seq1  CTTTCATCCCTGCACTCAGGAAGCAGGGCCAAACAGATCTGAGTCAGAGG  1078
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCATCCCTGCACTCAGGAAGCAGGGCCAAACAGATCTGAGTCAGAGG  1095

seq1  CCAGCCTGGTCTACAGAGTGAGTTCCAGGAATTC  1112
      ||||||||||||||||||||||||||||||||||
seq2  CCAGCCTGGTCTACAGAGTGAGTTCCAGGAATTC  1129