BAC Information

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BAC

Clone NameB6Ng01-320P17
Chromosome1 (Build37)
Map Location 168,778,266 - 168,779,292
singlet/doubletsinglet
Overlap genenone
Upstream geneCd247, Pou2f1, LOC665409, Dusp27, Gpa33, Mael, LOC100039795, Tada1l, Pogk, LOC100040287, EG226601, EG226604, 4831428F09Rik, LOC240895
Downstream geneLOC622102, C030014K22Rik, Uck2, LOC100039844, Tmco1, Aldh9a1, Mgst3, Lrrc52, Rxrg, Lmx1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-320P17.bB6Ng01-320P17.g
ACCGA110212GA110213
length1,0251,087
definitionB6Ng01-320P17.b B6Ng01-320P17.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctttagctctaggattctgtcttgattctctcttgtaaatctcgc
tttgttgattttctcactcatgctatgcgttttctcactcatgctatgcg
ttttctaactagctttgttgaactgactctgcttttgaatctttttcctt
gaaacttttcttctgagttatgttaggtattttattgatttcctttctaa
aaatcagcttcttgtacactcctttgcaagtatcatgataccttaatatt
tgtgaccctgtgttaatgtttatatgtacatctggtatagcagtttgcct
gaaccaatttgaccttaatagcaaaagcctttctctttgcttgtgcccca
gggtactgtttgatatgctcttttatttggttcaagtgggccttgatgtc
catgcaaattttttttaaacctgcagtcagtgttggcaacatcagagagt
atcttggtagcctagggtctaggaattatgggattatattgcttgctcgt
ctgcaataccctaagatgggttatgcttgctggtggttctgaacacagta
ttcctggttgtgggtatggatggcccatcaatttttatatgttcagtgaa
gatcattctgatggagtcatgtgactgtagcaaggcacccccagtcccat
tgcttactgggtcctcagaggatagacttcctaagtgtctgagtggatca
agccattatgaaaaggcagggatattttaccagtttgtatgtggacgagc
atggattctgagagccttttggggcctctttggcctcaggctgtcaaggc
tgattacctggcggcttcccaaggctgatagtatttatttatgtagggtc
acttggctgctggctgggcatcagtgcggctgtgtggatgtttccagggt
ggtgggaggattgggaaactatccagatattttctggggcctctgtaaga
tgaagcaacatatggtgtgggctgcttgggtagtgtgtggggctctagaa
gctgagctccataatgggtatatag
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
agattgcaggcttgtacaaccactctgagaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atttatccagaagatgccccaactggtaagaaggacacatgctctactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
gaaactcacacaatatgtactcactgataagtggatattagccccaaacc
taggattcccaagatataaggtacaatttgctaaacacatgaaactcaag
aagaatgaagactgaagtgtggacactatgcccctctttagaattgggaa
caaaacacccatgggaaggagttacagagacaaagtttggagctgagatg
aaaggatgggaccatgtagagactgccatatgcaggggatccaccccata
aatcagcatccaaacgctgacaccattgcatacactagcaagatttttat
tgaaagggccaagatgtagctatctcttgtgagactatgccggggcttag
ccaaacaacagaagtggatggctcacagttcagcctaatggatggatcac
caggctcccaatggagagtagctagtagaaagtaacccaatgagctataa
gggattctgctaacccttattagtttgacaacacttatgaactaactagt
actccccagagcttcttgactctctagactgcatatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_168778266_168779292
seq2: B6Ng01-320P17.b_51_1075 (reverse)

seq1  CTATATACCCA-TATGAGGCTCAGCCTCCTAGAGCCCCACACACTACCCA  49
      ||||||||||| ||||  |||||| || ||||||||||||||||||||||
seq2  CTATATACCCATTATGGAGCTCAG-CTTCTAGAGCCCCACACACTACCCA  49

seq1  AGCAGCCCACACCATATGTTTGCTTCATCTTACAGAGGCCCCAAGAAAAT  99
      |||||||||||||||||| ||||||||||||||||||||||| |||||||
seq2  AGCAGCCCACACCATATG-TTGCTTCATCTTACAGAGGCCCC-AGAAAAT  97

seq1  ATCTGGATAGTTTCCCAATCCTCCCACCACCCTGGAAACATCCACACAGC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGATAGTTTCCCAATCCTCCCACCACCCTGGAAACATCCACACAGC  147

seq1  CGCACTGATGCCCAGCCAGCAGCCAAGTGACCCTACATAAATAAATACTA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCACTGATGCCCAGCCAGCAGCCAAGTGACCCTACATAAATAAATACTA  197

seq1  TCAGCCTTGGGAAGCCGCCAGGTAATCAGCCTTGACAGCCTGAGGCCAAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCTTGGGAAGCCGCCAGGTAATCAGCCTTGACAGCCTGAGGCCAAA  247

seq1  GAGGCCCCAAAAGGCTCTCAGAATCCATGCTCGTCCACATACAAACTGGT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCCCAAAAGGCTCTCAGAATCCATGCTCGTCCACATACAAACTGGT  297

seq1  AAAATATCCCTGCCTTTTCATAATGGCTTGATCCACTCAGACACTTAGGA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATCCCTGCCTTTTCATAATGGCTTGATCCACTCAGACACTTAGGA  347

seq1  AGTCTATCCTCTGAGGACCCAGTAAGCAATGGGACTGGGGGTGCCTTGCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTATCCTCTGAGGACCCAGTAAGCAATGGGACTGGGGGTGCCTTGCT  397

seq1  ACAGTCACATGACTCCATCAGAATGATCTTCACTGAACATATAAAAATTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCACATGACTCCATCAGAATGATCTTCACTGAACATATAAAAATTG  447

seq1  ATGGGCCATCCATACCCACAACCAGGAATACTGTGTTCAGAACCACCAGC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGCCATCCATACCCACAACCAGGAATACTGTGTTCAGAACCACCAGC  497

seq1  AAGCATAACCCATCTTAGGGTATTGCAGACGAGCAAGCAATATAATCCCA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATAACCCATCTTAGGGTATTGCAGACGAGCAAGCAATATAATCCCA  547

seq1  TAATTCCTAGACCCTAGGCTACCAAGATACTCTCTGATGTTGCCAACACT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCCTAGACCCTAGGCTACCAAGATACTCTCTGATGTTGCCAACACT  597

seq1  GACTGCAGGTTTAAAAAAAATTTGCATGGACATCAAGGCCCACTTGAACC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGCAGGTTTAAAAAAAATTTGCATGGACATCAAGGCCCACTTGAACC  647

seq1  AAATAAAAGAGCATATCAAACAGTACCCTGGGGCACAAGCAAAGAGAAAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAAGAGCATATCAAACAGTACCCTGGGGCACAAGCAAAGAGAAAG  697

seq1  GCTTTTGCTATTAAGGTCAAATTGGTTCAGGCAAACTGCTATACCAGATG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTGCTATTAAGGTCAAATTGGTTCAGGCAAACTGCTATACCAGATG  747

seq1  TACATATAAACATTAACACAGGGTCACAAATATTAAGGTATCATGATACT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATATAAACATTAACACAGGGTCACAAATATTAAGGTATCATGATACT  797

seq1  TGCAAAGGAGTGTACAAGAAGCTGATTTTTAGAAAGGAAATCAATAAAAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAAGGAGTGTACAAGAAGCTGATTTTTAGAAAGGAAATCAATAAAAT  847

seq1  ACCTAACATAACTCAGAAGAAAAGTTTCAAGGAAAAAGATTCAAAAGCAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAACATAACTCAGAAGAAAAGTTTCAAGGAAAAAGATTCAAAAGCAG  897

seq1  AGTCAGTTCAACAAAGCTAGTTAGAAAACGCATAGCATGAGTGAGAAAAC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGTTCAACAAAGCTAGTTAGAAAACGCATAGCATGAGTGAGAAAAC  947

seq1  GCATAGCATGAGTGAGAAAATCAACAAAGCGAGATTTACAAGAGAGAATC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAGCATGAGTGAGAAAATCAACAAAGCGAGATTTACAAGAGAGAATC  997

seq1  AAGACAGAATCCTAGAGCTAAAGAATTC  1027
      ||||||||||||||||||||||||||||
seq2  AAGACAGAATCCTAGAGCTAAAGAATTC  1025