BAC Information

Click to search

BAC

Clone NameB6Ng01-321A13
Chromosome1 (Build37)
Map Location 106,399,691 - 106,400,873
singlet/doubletsinglet
Overlap geneLOC383546
Upstream genenone
Downstream geneLOC100041134, Cdh20, Rnf152, LOC100041985
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-321A13.bB6Ng01-321A13.g
ACCGA110252GA110253
length1,1941,230
definitionB6Ng01-321A13.b B6Ng01-321A13.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccagatactgggtcaactatgttcaaataaccatgacattatcaa
gttaccggtatgatgtctttctctgcatttaatgtagtagcttaaagata
ttaaaacataaaaatgagtgttttaagatattcataccgatacaatcaat
gacccatttatgtaggaccttccccaccactagggagtattaaaagttaa
gaaagctcacatcccttgccaaccaactagaaaggtcacactcctgcatt
tccaggcctctttaatattcactgctctgacttttcaatttgtttaggaa
tatatatttgaccaaggtttttattccttgaaaatttaccctaattattc
tcacaaattcattttcttgtactttcaggacttcagcaagtagatttata
gatgccattttattattacagctatccattaaaaggtaaatccacctttc
tttttctacatgatacaaaagacgctattttattttaagaaaattgaaaa
taatgctggcattaggacacattccaaggacaggggacaggcgcctcact
ccctgctggcttcttcctgctaggcacagtgtgcaggctgacagaacaaa
gatggtcaatgctggaactttatttcaaatgaggctaaaatttatcattg
tatgtcatcctaacaattaataattcattggttcatgaagactttctaaa
ctcaaagatagtttggaggttaatatgtctaatattttgatgaattaaaa
gctcagaacaatggatcattgagagactagtccatcttttcaaggaatgt
aagatgtatgccaaagaacaaataattatatacacacacgcaaacacaca
cacacacacacacacacacacacacacacaaatcattatcattgtctcaa
agtatgctcattttctaaaaatgtagaaaaaagtctttactttttaagtt
tctcttctttgttcctacaatgatcctttagtttgctctttaggactaaa
accaagtaatatcagtgtttaagatcacctgaccataaaaatagtttaca
gaataatcagaaactagaggggagcccaccttaaagccacattaccacta
agtgcccagcctaatgctgaagacatgttaccaacctcccaccaaaaaag
aaagccttctaagcccagatttgaatttctcagccaaatacaaa

gaattctcacatgaggaatactgagtggctgagaagcacctgaaaaaatg
ctcagcatccttaatcatgagggaaatgcaaatcgaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagagaaacactcctccattgttggtg
ggattgcaagcttgtacaaccatctggaaaccattctggtggttcctcaa
aaaattggacatagtactaccggaggatcccgaaatacctctcctgggca
tatatccagaagatgccccaactggtaagaaggacacatgctccactatg
ttcatagcagccttatttataatagccagaagctggaaagaacccagatg
cccctcaacagagaagtggatacagaaaatgtggttcatttacacaatgg
agtactactcagctactaaaaagaatgaatttatgaatttcctaggcaaa
tggatggacgtggagggcatcatcctgagagaggtaactcaatcacaaaa
gaattcccatgatatgtactcactgataagtgaatattatcctagaaact
tagaatacccaagatataagataccaactgcgaagcgtaacacatgaagc
ttgggaagaacgaagaccaaggtgtggatactttgcctcttcttggaatt
gggaacaaggcccccatggaaggagctacagagacagagtttgaagctga
gacaaaaggatggaccatctagagactaccatacctggggatacatccca
taatcagcctccaaacactgacaccattgcatacactagcaagagtttgc
tgaaaggaccctgatatagctgtctcttgtgagactatgccggggcctag
caaacacagaagtggatgctcacagtcagttattggatggatcccacagg
gccccaatggaggagctggagtaagtacccaggagctcgggcgatctgca
accctataagtggcactacaatatgaactactagtaccccccttctcccc
agagctcgtgtctctagctacatattgttattaagaaagatggcttgtca
gtcatcagtgaaagagagaggtccaatggtcgtgcagacctaatatggct
cagtatccggagtcaagtccacaggtggaaatgagaatgaggtgtgtcaa
tccgttctcacattactgtcagctacaatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_106399691_106400873
seq2: B6Ng01-321A13.b_50_1243

seq1  GAATTCCAGATACTGGGTCAACTATGTTCAAATAACCATGACATTATCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGATACTGGGTCAACTATGTTCAAATAACCATGACATTATCAA  50

seq1  GTTACCGGTATGATGTCTTTCTCTGCATTTAATGTAGTAGCTTAAAGATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACCGGTATGATGTCTTTCTCTGCATTTAATGTAGTAGCTTAAAGATA  100

seq1  TTAAAACATAAAAATGAGTGTTTTAAGATATTCATACCGATACAATCAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAACATAAAAATGAGTGTTTTAAGATATTCATACCGATACAATCAAT  150

seq1  GACCCATTTATGTAGGACCTTCCCCACCACTAGGGAGTATTAAAAGTTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCATTTATGTAGGACCTTCCCCACCACTAGGGAGTATTAAAAGTTAA  200

seq1  GAAAGCTCACATCCCTTGCCAACCAACTAGAAAGGTCACACTCCTGCATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCTCACATCCCTTGCCAACCAACTAGAAAGGTCACACTCCTGCATT  250

seq1  TCCAGGCCTCTTTAATATTCACTGCTCTGACTTTTCAATTTGTTTAGGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGCCTCTTTAATATTCACTGCTCTGACTTTTCAATTTGTTTAGGAA  300

seq1  TATATATTTGACCAAGGTTTTTATTCCTTGAAAATTTACCCTAATTATTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATTTGACCAAGGTTTTTATTCCTTGAAAATTTACCCTAATTATTC  350

seq1  TCACAAATTCATTTTCTTGTACTTTCAGGACTTCAGCAAGTAGATTTATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAAATTCATTTTCTTGTACTTTCAGGACTTCAGCAAGTAGATTTATA  400

seq1  GATGCCATTTTATTATTACAGCTATCCATTAAAAGGTAAATCCACCTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCCATTTTATTATTACAGCTATCCATTAAAAGGTAAATCCACCTTTC  450

seq1  TTTTTCTACATGATACAAAAGACGCTATTTTATTTTAAGAAAATTGAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTACATGATACAAAAGACGCTATTTTATTTTAAGAAAATTGAAAA  500

seq1  TAATGCTGGCATTAGGACACATTCCAAGGACAGGGGACAGGCGCCTCACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGCTGGCATTAGGACACATTCCAAGGACAGGGGACAGGCGCCTCACT  550

seq1  CCCTGCTGGCTTCTTCCTGCTAGGCACAGTGTGCAGGCTGACAGAACAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCTGGCTTCTTCCTGCTAGGCACAGTGTGCAGGCTGACAGAACAAA  600

seq1  GATGGTCAATGCTGGAACTTTATTTCAAATGAGGCTAAAATTTATCATTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGTCAATGCTGGAACTTTATTTCAAATGAGGCTAAAATTTATCATTG  650

seq1  TATGTCATCCTAACAATTAATAATTCATTGGTTCATGAAGACTTTCTAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTCATCCTAACAATTAATAATTCATTGGTTCATGAAGACTTTCTAAA  700

seq1  CTCAAAGATAGTTTGGAGGTTAATATGTCTAATATTTTGATGAATTAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAGATAGTTTGGAGGTTAATATGTCTAATATTTTGATGAATTAAAA  750

seq1  GCTCAGAACAATGGATCATTGAGAGACTAGTCCATCTTTTCAAGGAATGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGAACAATGGATCATTGAGAGACTAGTCCATCTTTTCAAGGAATGT  800

seq1  AAGATGTATGCCAAAGAACAAATAATTATATACACACACGCAAACACACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGTATGCCAAAGAACAAATAATTATATACACACACGCAAACACACA  850

seq1  CACACACACACACACACACACACACACACAAATCATTATCATTGTCTCAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACAAATCATTATCATTGTCTCAA  900

seq1  AGTATGCTCATTTTCTAAAAATGTAGAAAAAAGTCTTTACTTTTTAAGTT  950
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AGTATGCTCATTTTCTAAAAATGTAGAAAAAAGTCTTTACTTTTTAAG-T  949

seq1  TTCTCTTTCTTTTGTTCCTACAATGATCCTTTAGTTTGCTCTTTAGGACT  1000
      |||||||   ||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTT--CTTTGTTCCTACAATGATCCTTTAGTTTGCTCTTTAGGACT  997

seq1  AAAACCAAGT-ATATCAGTGTTTTAAGATCA-CTGACCATTAAAATAG-T  1047
      |||||||||| ||||||||| |||||||||| |||||||| ||||||| |
seq2  AAAACCAAGTAATATCAGTG-TTTAAGATCACCTGACCATAAAAATAGTT  1046

seq1  TACAAGATAATCAGAAACTAAGAGGGAG-CCACC-TAAAGGCACATTA-C  1094
      ||||  ||||||||||||||   ||||| ||||| ||||| ||||||| |
seq2  TACAGAATAATCAGAAACTAGAGGGGAGCCCACCTTAAAGCCACATTACC  1096

seq1  ACTAAGTGCCCAG-CTAATGGTGAAGACATG-TACCAA-CTCCAAC--AA  1139
      ||||||||||||| |||||| |||||||||| |||||| |||| ||  ||
seq2  ACTAAGTGCCCAGCCTAATGCTGAAGACATGTTACCAACCTCCCACCAAA  1146

seq1  AAAGAA--GCTTCTAAGCCCAG-TTGGAGATTTCTCAGC--AATACAAA  1183
      ||||||   ||||||||||||| || || ||||||||||  ||||||||
seq2  AAAGAAAGCCTTCTAAGCCCAGATTTGA-ATTTCTCAGCCAAATACAAA  1194


| Home | SequenceCutter | Blast | Download |