BAC Information

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BAC

Clone NameB6Ng01-321G17
Chromosome1 (Build37)
Map Location 41,415,647 - 41,542,529
singlet/doubletdoublet
Overlap geneLOC100041441
Upstream geneIl1rl2, Il1rl1, Il18r1, Il18rap, Slc9a4, Slc9a2, Mfsd9, Tmem182, Ppia-ps1_352.1
Downstream geneLOC383634, LOC666582
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-321G17.bB6Ng01-321G17.g
ACCGA110530GA110531
length1,0881,150
definitionB6Ng01-321G17.b B6Ng01-321G17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,415,647 - 41,416,733)(41,541,383 - 41,542,529)
sequence
gaattccaagtgtcatgcctatagataagcaagaaaatgtgaaaactgaa
aatttcaaaatattaaatgcctttgattgacatcaaatttcctctgaaat
tgttcccttctggcaggaatggatatattacatttaattttcctttctta
aaaaataaggcatgtgtctccttagggaccatcacccatttttttagact
gggtgtccacagctttcacagataaaacaatacatgacagaggaggacat
tttaccttggtatctcagggctggctcagacatggaggactctgtgtctc
taagcaggaccaacatagctttgccttctggttcattagactgagaaatc
cctttcttgacctatgcccgagtacaacagacccatgtttaagtaaaagc
acaggaaatgacagggagacaaggctgagacacctgtctagagcacggtt
gacccaccaggcttaactaatttctccctgacctctgacccagatttcca
caactccacggggatttgtatctttcttccaaaagcccccacacctgcaa
ccgattaatgaaacaaaagtcaactttgttatctgatgagctgaactgcc
caagttagcagagacaattgttttattactgtattgacaaattgtcctat
taacaaccagctactacaaaaaaaaatcaattaaaatcttggctgagaaa
ttcaaatatagttaaatacataaaaaggggaattaaatagtgagctaata
gtctcttttcttttttttttttttcataacatagttcatcagttggtagc
agtcacatctaaactaggaatttgtgttgaaaagaagttgtaacaggaca
tatggagcagcccggtgtttaatttcattttatttcctgccgatgtgctt
ctcggcacctgtaggcacatcaataccgcgtgtgatatttctccagcatc
atgcctaatagcttcctctcagtgacctgcagtaaataatcctctataac
atttgctaggtggagggaggacaatatccttcttggaaactttctttttg
tcagaggacttattttctctgagtgggttcggtagaaa

gaattctaataattagtacaatacaaaccctctaaaacctgtggaagaca
cacattctccacagatccaggacaagtcaggtgcaggaactacttgtaga
caaaattataggctttggcatttgtctctcactgcctgcaatgattcgca
ctaaaactttaaacacgttttacaaatctcattctagctacaataggatg
gcactttatcaataactatagaagtatgtgagctgtcaatctgcttaatc
tcttacaagtgtgtgtatgcatgcacgtgtgcctgtggagaccagagaat
aaatcaggtgtcattttcaaatgcaccatccacctttaagacagggggat
ttatttgcccagaaatcatcagttaggttacagtagctggccagcaagga
ccaggaatcctcctgtctctgcctgactttcatcattagaattgcacagg
catatccagatgcccggcattttgtaacggggttctggggattgaactct
ggtcttcctgcttgcacttccatggatgaaacagcccaggagtgtttttc
ttcaaagttcactgtagtctttactgttagatttacaccaaatgactaaa
aaatgaaaagatgttttgtctcttgctaaggtgaagaggtaataattaag
tttttctcatagcactctttatttttcattctggggttgaatatctactg
ttactcttctcccacttcaaacacaggctttctcttgagtctctttattc
tggtatctgaatgttatccaataccttgagagtctgtcattattgaacta
gtctttccccattgcttattttaatattacatagctattaataggttttg
gagataaaccttggaattttgtgaagagcaaaaactaatgtaaatagaca
ttggagatatttctttttattttttcttattaaaatatttttatacaata
tattctgactacagtttttccttcccagtctcctcccagttccttctcca
gatacgcagcctttctgcctcttgttagaaaaagaaacagacatgttagg
aatagtattaaattaaattagaaagaacaaacaaacctgaaatggtacaa
aacaaccaaacccattgcaagaaaaataccctaaagaaaaagttatggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_41415647_41416733
seq2: B6Ng01-321G17.b_43_1130

seq1  GAATTCCAAGTGTCATGCCTATAGATAAGCAAGAAAATGTGAAAACTGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGTGTCATGCCTATAGATAAGCAAGAAAATGTGAAAACTGAA  50

seq1  AATTTCAAAATATTAAATGCCTTTGATTGACATCAAATTTCCTCTGAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCAAAATATTAAATGCCTTTGATTGACATCAAATTTCCTCTGAAAT  100

seq1  TGTTCCCTTCTGGCAGGAATGGATATATTACATTTAATTTTCCTTTCTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCCTTCTGGCAGGAATGGATATATTACATTTAATTTTCCTTTCTTA  150

seq1  AAAAATAAGGCATGTGTCTCCTTAGGGACCATCACCCATTTTTTTAGACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATAAGGCATGTGTCTCCTTAGGGACCATCACCCATTTTTTTAGACT  200

seq1  GGGTGTCCACAGCTTTCACAGATAAAACAATACATGACAGAGGAGGACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGTCCACAGCTTTCACAGATAAAACAATACATGACAGAGGAGGACAT  250

seq1  TTTACCTTGGTATCTCAGGGCTGGCTCAGACATGGAGGACTCTGTGTCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCTTGGTATCTCAGGGCTGGCTCAGACATGGAGGACTCTGTGTCTC  300

seq1  TAAGCAGGACCAACATAGCTTTGCCTTCTGGTTCATTAGACTGAGAAATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCAGGACCAACATAGCTTTGCCTTCTGGTTCATTAGACTGAGAAATC  350

seq1  CCTTTCTTGACCTATGCCCGAGTACAACAGACCCATGTTTAAGTAAAAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCTTGACCTATGCCCGAGTACAACAGACCCATGTTTAAGTAAAAGC  400

seq1  ACAGGAAATGACAGGGAGACAAGGCTGAGACACCTGTCTAGAGCACGGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAAATGACAGGGAGACAAGGCTGAGACACCTGTCTAGAGCACGGTT  450

seq1  GACCCACCAGGCTTAACTAATTTCTCCCTGACCTCTGACCCAGATTTCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCACCAGGCTTAACTAATTTCTCCCTGACCTCTGACCCAGATTTCCA  500

seq1  CAACTCCACGGGGATTTGTATCTTTCTTCCAAAAGCCCCCACACCTGCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTCCACGGGGATTTGTATCTTTCTTCCAAAAGCCCCCACACCTGCAA  550

seq1  CCGATTAATGAAACAAAAGTCAACTTTGTTATCTGATGAGCTGAACTGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGATTAATGAAACAAAAGTCAACTTTGTTATCTGATGAGCTGAACTGCC  600

seq1  CAAGTTAGCAGAGACAATTGTTTTATTACTGTATTGACAAATTGTCCTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTAGCAGAGACAATTGTTTTATTACTGTATTGACAAATTGTCCTAT  650

seq1  TAACAACCAGCTACTACAAAAAAAAATCAATTAAAATCTTGGCTGAGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAACCAGCTACTACAAAAAAAAATCAATTAAAATCTTGGCTGAGAAA  700

seq1  TTCAAATATAGTTAAATACATAAAAAGGGGAATTAAATAGTGAGCTAATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAATATAGTTAAATACATAAAAAGGGGAATTAAATAGTGAGCTAATA  750

seq1  GTCTCTTTTCTTTTTTTTTTTTTTCATAACATAGTTCATCAGTTGGTAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTTTTCTTTTTTTTTTTTTTCATAACATAGTTCATCAGTTGGTAGC  800

seq1  AGTCACATCTAAACTAGGAATTTGTGTTGAAAAGAAGTTGTAACAGGACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACATCTAAACTAGGAATTTGTGTTGAAAAGAAGTTGTAACAGGACA  850

seq1  TATGGAGCAGCCCGGTGTTTAATTTCATTTTATTTCCTGCCGATGTGCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGAGCAGCCCGGTGTTTAATTTCATTTTATTTCCTGCCGATGTGCTT  900

seq1  CTCGGCACCTGTAGGCACATCAATACCGCGTGTGATATTTCTCCAGCATC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGGCACCTGTAGGCACATCAATACCGCGTGTGATATTTCTCCAGCATC  950

seq1  ATGCCTAAATAGCTTCCTCTCAGTGACCTGCAGTAAATAATCCTCTATAA  1000
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCT-AATAGCTTCCTCTCAGTGACCTGCAGTAAATAATCCTCTATAA  999

seq1  CATTTGCTAGGTGGAGGGAGGAC-ATATCCTTCTT-GAAACTT--CTTTT  1046
      ||||||||||||||||||||||| ||||||||||| |||||||   ||||
seq2  CATTTGCTAGGTGGAGGGAGGACAATATCCTTCTTGGAAACTTTCTTTTT  1049

seq1  GTCAGAAGGAACTTTAATTTTCTCTGAGTGGGT--CGTAGAAA  1087
      ||||||  | ||||  |||||||||||||||||   |||||||
seq2  GTCAGA--GGACTT--ATTTTCTCTGAGTGGGTTCGGTAGAAA  1088


seq1: chr1_41541383_41542529
seq2: B6Ng01-321G17.g_66_1215 (reverse)

seq1  TCCCAT-ACTTTTTCTTTA-GGTATTTTTCTT-CCATTGGTTTGTTTGTT  47
      |||||| |||||||||||| |||||||||||| | || |||||| |||||
seq2  TCCCATAACTTTTTCTTTAGGGTATTTTTCTTGCAATGGGTTTGGTTGTT  50

seq1  TTGTACCATTTCAGTTTGTTTTGTTCTTTCTTATTTATTTTTAATACTAT  97
      |||||||||||||| ||  |||||||||||| |||||  |||||||||||
seq2  TTGTACCATTTCAGGTTTGTTTGTTCTTTCTAATTTA-ATTTAATACTAT  99

seq1  TCCTTACATGTCTGTTTC-TTTTCTAACAAGAGGCAGAAAGGCTGCGTAT  146
      |||| ||||||||||||| |||||||||||||||||||||||||||||||
seq2  TCCTAACATGTCTGTTTCTTTTTCTAACAAGAGGCAGAAAGGCTGCGTAT  149

seq1  CTGGAGAAGGAACTGGGAGGAGACTGGGAAGGAAAAACTGTAGTCAGAAT  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGAAGGAACTGGGAGGAGACTGGGAAGGAAAAACTGTAGTCAGAAT  199

seq1  ATATTGTATAAAAATATTTTAATAAGAAAAAATAAAAAGAAATATCTCCA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGTATAAAAATATTTTAATAAGAAAAAATAAAAAGAAATATCTCCA  249

seq1  ATGTCTATTTACATTAGTTTTTGCTCTTCACAAAATTCCAAGGTTTATCT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTATTTACATTAGTTTTTGCTCTTCACAAAATTCCAAGGTTTATCT  299

seq1  CCAAAACCTATTAATAGCTATGTAATATTAAAATAAGCAATGGGGAAAGA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAACCTATTAATAGCTATGTAATATTAAAATAAGCAATGGGGAAAGA  349

seq1  CTAGTTCAATAATGACAGACTCTCAAGGTATTGGATAACATTCAGATACC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTTCAATAATGACAGACTCTCAAGGTATTGGATAACATTCAGATACC  399

seq1  AGAATAAAGAGACTCAAGAGAAAGCCTGTGTTTGAAGTGGGAGAAGAGTA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAAAGAGACTCAAGAGAAAGCCTGTGTTTGAAGTGGGAGAAGAGTA  449

seq1  ACAGTAGATATTCAACCCCAGAATGAAAAATAAAGAGTGCTATGAGAAAA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTAGATATTCAACCCCAGAATGAAAAATAAAGAGTGCTATGAGAAAA  499

seq1  ACTTAATTATTACCTCTTCACCTTAGCAAGAGACAAAACATCTTTTCATT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAATTATTACCTCTTCACCTTAGCAAGAGACAAAACATCTTTTCATT  549

seq1  TTTTAGTCATTTGGTGTAAATCTAACAGTAAAGACTACAGTGAACTTTGA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGTCATTTGGTGTAAATCTAACAGTAAAGACTACAGTGAACTTTGA  599

seq1  AGAAAAACACTCCTGGGCTGTTTCATCCATGGAAGTGCAAGCAGGAAGAC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAACACTCCTGGGCTGTTTCATCCATGGAAGTGCAAGCAGGAAGAC  649

seq1  CAGAGTTCAATCCCCAGAACCCCGTTACAAAATGCCGGGCATCTGGATAT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTTCAATCCCCAGAACCCCGTTACAAAATGCCGGGCATCTGGATAT  699

seq1  GCCTGTGCAATTCTAATGATGAAAGTCAGGCAGAGACAGGAGGATTCCTG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTGCAATTCTAATGATGAAAGTCAGGCAGAGACAGGAGGATTCCTG  749

seq1  GTCCTTGCTGGCCAGCTACTGTAACCTAACTGATGATTTCTGGGCAAATA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTGCTGGCCAGCTACTGTAACCTAACTGATGATTTCTGGGCAAATA  799

seq1  AATCCCCCTGTCTTAAAGGTGGATGGTGCATTTGAAAATGACACCTGATT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCCCTGTCTTAAAGGTGGATGGTGCATTTGAAAATGACACCTGATT  849

seq1  TATTCTCTGGTCTCCACAGGCACACGTGCATGCATACACACACTTGTAAG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTCTGGTCTCCACAGGCACACGTGCATGCATACACACACTTGTAAG  899

seq1  AGATTAAGCAGATTGACAGCTCACATACTTCTATAGTTATTGATAAAGTG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTAAGCAGATTGACAGCTCACATACTTCTATAGTTATTGATAAAGTG  949

seq1  CCATCCTATTGTAGCTAGAATGAGATTTGTAAAACGTGTTTAAAGTTTTA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCTATTGTAGCTAGAATGAGATTTGTAAAACGTGTTTAAAGTTTTA  999

seq1  GTGCGAATCATTGCAGGCAGTGAGAGACAAATGCCAAAGCCTATAATTTT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCGAATCATTGCAGGCAGTGAGAGACAAATGCCAAAGCCTATAATTTT  1049

seq1  GTCTACAAGTAGTTCCTGCACCTGACTTGTCCTGGATCTGTGGAGAATGT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTACAAGTAGTTCCTGCACCTGACTTGTCCTGGATCTGTGGAGAATGT  1099

seq1  GTGTCTTCCACAGGTTTTAGAGGGTTTGTATTGTACTAATTATTAGAATT  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTTCCACAGGTTTTAGAGGGTTTGTATTGTACTAATTATTAGAATT  1149

seq1  C  1147
      |
seq2  C  1150


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