BAC Information

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BAC

Clone NameB6Ng01-321I02
Chromosome1 (Build37)
Map Location 105,520,645 - 105,721,462
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100041067
Downstream geneLOC383546, LOC100041134, Cdh20
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-321I02.bB6Ng01-321I02.g
ACCGA110590GA110591
length9921,067
definitionB6Ng01-321I02.b B6Ng01-321I02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(105,720,492 - 105,721,462)(105,520,645 - 105,521,711)
sequence
gaattccctggcaaactctagattatgacttctttatttcaaggagctgt
caggagtcatggtgtgttcaatgcagtgtcttggtgtttctcttaaggag
aaatgaaatgtatgctactataatggcagatatcaaattttagactttga
ttttattgatttttaaattttattttgtgcatgttcaaatttatatgtgt
gaggtgtgaggattcatggtttaaattaagattaacttgtacagaataaa
taaaattattatgctatttaaaatatgtaatctaaaacatttttcatatt
aatataataaaatgtgttttccaaaatttcatgtctccagagtattaatc
tcaaagaaattttactttggtgctaacacgttaaaatacttgctggttct
gtatttcaaaagctggacaaaagatggcaaatctattccttgaatgacag
ggtagatatatagcatatacagagtaaatacaagagtatgttgaaacagc
tttgaagacagcttgaattattatgtctctcatcacaaatgtccaacagg
aattataaggctaagattttcttttgtctctgtttctgtctaaatcttat
cactattcctagggagagaagaaaaaaatctccttaccccacctagccta
gacaaagaccaccaattcctgtctgttgaaccattgaggtgtttgttttg
tttgtttgtttgtttgtggggattcttacagcagtatgtatgacaggtta
ctttataatcatttcctagaagaaatgattcaaatacagctgcatgtgag
aaagttcaaccccacagtatagggtgatgttcatgaaatctgggaaaata
tggaagcatactaggttgggagagtattttttccagatgtctgggcctca
gtttgttttgattccttttctgaacacgattgtacatgtcctcatctttt
ttcccaggcagctttattgatatggtttcggcatggtggctt

gaattcaggtcccagaaggcagctcactatagcaagtaacttcagctcca
gggaatctggcaccctatttggtttctttagatattttcacacatgtgca
tgtacacaaaaacacacacaaacacttacaaataataactagtttttttt
attaagaatggaaacatattttgctgtttatctaagttgtcctcctgaga
agaaaataattcaaattaaaatccacatggatctgtgattttttgttgtg
acacctattataatattcagagaactttcattttgtcagtccttaaccag
ctctttttatcttgatagcctttctattttgtcttgggacaccaattttc
tctaacctttcaccatctgcagatgacacctcataatgacaaattggcac
actatgacttacattctgtattctatcagtctaaagtgaataagtaactc
cccctattttacttttacatctcttatatctgagctcaatcatatattta
aggcactatattcatggtggttacatattaagtcagtattttatttgata
ccttatatataggtgatataaggaaagtgctattaatgtttaaaggaaaa
gaatagatatgagacaatgctggagaatctgagaaactatttagaggaga
ttacagaaacaattcaagtacccatgaatatgtaatgatgatatgcaact
tcttccttgattgaaaattcattctgaaccaaatgtaaggatatatatat
atagagagagagagtgtttctctgaatagccctggatgtcctggaactca
ctttgtagaccaggctggcctcgaactcagaaatctgcctgcttctgcct
cccaggtgctgggattaaggaatgtgccaacatgcccggcttgtaaggat
atttttaaagatgaaatggaagctttatattgagagccttagaattcatg
ttccaggaatgttgcatgtgtgtgcatttagcagtcttcccattaacttt
gttaatctccacagcagagactgctttattatccaccttcgtccctgctg
tgtttaaaaacgagcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_105720492_105721462
seq2: B6Ng01-321I02.b_47_1038 (reverse)

seq1  AAGCCACCAGGCAGAAA-CATATCAATAAAGCTGCCTGG--AAAAAGCTG  47
      ||||||||| || |||| |||||||||||||||||||||  |||||| ||
seq2  AAGCCACCATGCCGAAACCATATCAATAAAGCTGCCTGGGAAAAAAGATG  50

seq1  A-GACCTG-ACAATC-TGTTCAGAAAAGG-ATC-AAACCAACTGAG--CC  90
      | ||| || |||||| ||||||||||||| ||| |||| |||||||  ||
seq2  AGGACATGTACAATCGTGTTCAGAAAAGGAATCAAAACAAACTGAGGCCC  100

seq1  AGACATCTGG-AAAAATACTCT-CCAACCTAGTATGCTCC---ATTTTTC  135
      |||||||||| ||||||||||| ||||||||||||||| |   ||||| |
seq2  AGACATCTGGAAAAAATACTCTCCCAACCTAGTATGCTTCCATATTTTCC  150

seq1  CAGATTTCATGAACATCA-CCTATACTGT-GGGTTGAAC-TTCTCACATG  182
      |||||||||||||||||| |||||||||| ||||||||| ||||||||||
seq2  CAGATTTCATGAACATCACCCTATACTGTGGGGTTGAACTTTCTCACATG  200

seq1  CAGCTGTATTTGAATCATTTCTTCTAGG-AATGATTAT-AAGTAACCTGT  230
      |||||||||||||||||||||||||||| ||||||||| |||||||||||
seq2  CAGCTGTATTTGAATCATTTCTTCTAGGAAATGATTATAAAGTAACCTGT  250

seq1  CATACATACTGCTGTAAGAATCCCCACAAACAAACAAACAAAC-AAACAA  279
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CATACATACTGCTGTAAGAATCCCCACAAACAAACAAACAAACAAAACAA  300

seq1  ACACCTCAATGGTTCAACAGACAGGAATTGGTGGTCTTTGTCTAGGCTAG  329
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTCAATGGTTCAACAGACAGGAATTGGTGGTCTTTGTCTAGGCTAG  350

seq1  GTGGGGTAAGGAGATTTTTTTCTTCTCTCCCTAGGAATAGTGATAAGATT  379
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGTAAGGAGATTTTTTTCTTCTCTCCCTAGGAATAGTGATAAGATT  400

seq1  TAGACAGAAACAGAGACAAAAGAAAATCTTAGCCTTATAATTCCTGTTGG  429
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACAGAAACAGAGACAAAAGAAAATCTTAGCCTTATAATTCCTGTTGG  450

seq1  ACATTTGTGATGAGAGACATAATAATTCAAGCTGTCTTCAAAGCTGTTTC  479
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTGTGATGAGAGACATAATAATTCAAGCTGTCTTCAAAGCTGTTTC  500

seq1  AACATACTCTTGTATTTACTCTGTATATGCTATATATCTACCCTGTCATT  529
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATACTCTTGTATTTACTCTGTATATGCTATATATCTACCCTGTCATT  550

seq1  CAAGGAATAGATTTGCCATCTTTTGTCCAGCTTTTGAAATACAGAACCAG  579
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGAATAGATTTGCCATCTTTTGTCCAGCTTTTGAAATACAGAACCAG  600

seq1  CAAGTATTTTAACGTGTTAGCACCAAAGTAAAATTTCTTTGAGATTAATA  629
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTATTTTAACGTGTTAGCACCAAAGTAAAATTTCTTTGAGATTAATA  650

seq1  CTCTGGAGACATGAAATTTTGGAAAACACATTTTATTATATTAATATGAA  679
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGAGACATGAAATTTTGGAAAACACATTTTATTATATTAATATGAA  700

seq1  AAATGTTTTAGATTACATATTTTAAATAGCATAATAATTTTATTTATTCT  729
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTTTAGATTACATATTTTAAATAGCATAATAATTTTATTTATTCT  750

seq1  GTACAAGTTAATCTTAATTTAAACCATGAATCCTCACACCTCACACATAT  779
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAAGTTAATCTTAATTTAAACCATGAATCCTCACACCTCACACATAT  800

seq1  AAATTTGAACATGCACAAAATAAAATTTAAAAATCAATAAAATCAAAGTC  829
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTGAACATGCACAAAATAAAATTTAAAAATCAATAAAATCAAAGTC  850

seq1  TAAAATTTGATATCTGCCATTATAGTAGCATACATTTCATTTCTCCTTAA  879
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATTTGATATCTGCCATTATAGTAGCATACATTTCATTTCTCCTTAA  900

seq1  GAGAAACACCAAGACACTGCATTGAACACACCATGACTCCTGACAGCTCC  929
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAACACCAAGACACTGCATTGAACACACCATGACTCCTGACAGCTCC  950

seq1  TTGAAATAAAGAAGTCATAATCTAGAGTTTGCCAGGGAATTC  971
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAATAAAGAAGTCATAATCTAGAGTTTGCCAGGGAATTC  992


seq1: chr1_105520645_105521711
seq2: B6Ng01-321I02.g_67_1133

seq1  GAATTCAGGTCCCAGAAGGCAGCTCACTATAGCAAGTAACTTCAGCTCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGTCCCAGAAGGCAGCTCACTATAGCAAGTAACTTCAGCTCCA  50

seq1  GGGAATCTGGCACCCTATTTGGTTTCTTTAGATATTTTCACACATGTGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATCTGGCACCCTATTTGGTTTCTTTAGATATTTTCACACATGTGCA  100

seq1  TGTACACAAAAACACACACAAACACTTACAAATAATAACTAGTTTTTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACACAAAAACACACACAAACACTTACAAATAATAACTAGTTTTTTTT  150

seq1  ATTAAGAATGGAAACATATTTTGCTGTTTATCTAAGTTGTCCTCCTGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGAATGGAAACATATTTTGCTGTTTATCTAAGTTGTCCTCCTGAGA  200

seq1  AGAAAATAATTCAAATTAAAATCCACATGGATCTGTGATTTTTTGTTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATAATTCAAATTAAAATCCACATGGATCTGTGATTTTTTGTTGTG  250

seq1  ACACCTATTATAATATTCAGAGAACTTTCATTTTGTCAGTCCTTAACCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTATTATAATATTCAGAGAACTTTCATTTTGTCAGTCCTTAACCAG  300

seq1  CTCTTTTTATCTTGATAGCCTTTCTATTTTGTCTTGGGACACCAATTTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTTTATCTTGATAGCCTTTCTATTTTGTCTTGGGACACCAATTTTC  350

seq1  TCTAACCTTTCACCATCTGCAGATGACACCTCATAATGACAAATTGGCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAACCTTTCACCATCTGCAGATGACACCTCATAATGACAAATTGGCAC  400

seq1  ACTATGACTTACATTCTGTATTCTATCAGTCTAAAGTGAATAAGTAACTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGACTTACATTCTGTATTCTATCAGTCTAAAGTGAATAAGTAACTC  450

seq1  CCCCTATTTTACTTTTACATCTCTTATATCTGAGCTCAATCATATATTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTATTTTACTTTTACATCTCTTATATCTGAGCTCAATCATATATTTA  500

seq1  AGGCACTATATTCATGGTGGTTACATATTAAGTCAGTATTTTATTTGATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACTATATTCATGGTGGTTACATATTAAGTCAGTATTTTATTTGATA  550

seq1  CCTTATATATAGGTGATATAAGGAAAGTGCTATTAATGTTTAAAGGAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTATATATAGGTGATATAAGGAAAGTGCTATTAATGTTTAAAGGAAAA  600

seq1  GAATAGATATGAGACAATGCTGGAGAATCTGAGAAACTATTTAGAGGAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAGATATGAGACAATGCTGGAGAATCTGAGAAACTATTTAGAGGAGA  650

seq1  TTACAGAAACAATTCAAGTACCCATGAATATGTAATGATGATATGCAACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGAAACAATTCAAGTACCCATGAATATGTAATGATGATATGCAACT  700

seq1  TCTTCCTTGATTGAAAATTCATTCTGAACCAAATGTAAGGATATATATAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTTGATTGAAAATTCATTCTGAACCAAATGTAAGGATATATATAT  750

seq1  ATAGAGAGAGAGAGTGTTTCTCTGAATAGCCCTGGATGTCCTGGAACTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGAGAGAGAGTGTTTCTCTGAATAGCCCTGGATGTCCTGGAACTCA  800

seq1  CTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCTGCCTGCTTCTGCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCTGCCTGCTTCTGCCT  850

seq1  CCCAGGTGCTGGGATTAAAGGAATGTGCCAACATGCCCGGCTTGTAAGGA  900
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CCCAGGTGCTGGGATT-AAGGAATGTGCCAACATGCCCGGCTTGTAAGGA  899

seq1  TATTTTTAAAAGATGAAATGGAAGCTTTATAATTGAGAGCCTTAGAATTC  950
      ||||||| |||||||||||||||||||||| |||||||||||||||||||
seq2  TATTTTT-AAAGATGAAATGGAAGCTTTAT-ATTGAGAGCCTTAGAATTC  947

seq1  ATGTTCCAGGAATGTTGCATGTGTGTGCATTTAGCAGTCTTCCCATT-AC  999
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  ATGTTCCAGGAATGTTGCATGTGTGTGCATTTAGCAGTCTTCCCATTAAC  997

seq1  TTTG-TAATCTCCCACAGCAGAGACTGC-TTATAAT-CACCTTCGTCCTT  1046
      |||| |||||| |||||||||||||||| |||| || ||||||||||| |
seq2  TTTGTTAATCT-CCACAGCAGAGACTGCTTTATTATCCACCTTCGTCCCT  1046

seq1  GCTGTGTTTACAACGAAGCAT  1067
      |||||||||| ||   |||||
seq2  GCTGTGTTTAAAAACGAGCAT  1067


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