BAC Information

Click to search

BAC

Clone NameB6Ng01-321J02
Chromosome1 (Build37)
Map Location 25,532,855 - 25,642,076
singlet/doubletdoublet
Overlap geneBai3
Upstream geneCol19a1, LOC100040475, LOC665829, Lmbrd1, 4930472D16Rik, LOC669171
Downstream geneLOC665595
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-321J02.bB6Ng01-321J02.g
ACCGA110636GA110637
length1,0951,082
definitionB6Ng01-321J02.b B6Ng01-321J02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,640,980 - 25,642,076)(25,532,855 - 25,533,936)
sequence
gaattcttcaatgacacctaggcatattctacctattgatttcaccttgt
gagagtcaagttgaccctcaacctccactatgttataacgaaagtcttaa
gcccttgctttgtacaaaaacttatttctggcaccattttaaaaaacact
gaccatagtacagaatagtagccaagagagaaatcagttactggaaagaa
tacgtttctatgcccagtagtacagcagaataagtataatcaacattatc
actctcagaatagaaaggatgcttgagattacttagggtaaagaagtctg
aaaggtttaatttggggctacagaaatggctcagtggttacaagagcttt
tacatctctggttttggttcccagcactgacagagtgattccaaactgta
atcccagttccagggtgttcaacatcctcttcttccatcaacaggcactg
cacacacatggtgtacctaaacatatgggtaaaacactcatacatataaa
cattcaattaaataaatgtttttctttttaaaataagttcaatggagtat
gtatactagttcttgtaagtaggtcattatccattatatacatagttcaa
catattttgttctcttaatttctgctggttttgtgtatttacaatgccac
ctcatcttgaaaatatagtaagtcaagaatgcatatcatagcaaacataa
aaacatagcaagacagaacagaggaaaccattggatctgccatcttatgc
ttgcatgactggaaggagctgcttaggaatgccactgcccaacattggcc
attgtgctgcacatcaccagcttgaggtccaacatcaaactgaaggatgg
cttctgctgaattctcatcacctgtgggagtctctaaaagtgtctcatgg
tcagtagcaaaatgatctgcagaaaggcaagaaggaaacttgtttgaata
tgaatttagttagctggtgctgggttccgacttctggagtctgacaccat
gtggcttattttagacatagtgagttcagcacatattggaagaaaggaaa
aagtttcaatgataataactaagtcagctggatgtacaacaaagc

gaattccaaagaaaactccagagaaaggccctgctcaacaattcaaagaa
tttataggagactgaagaactccaaacaatggaatcaatttctccacaga
ctggagccttctcccccgttgcttcttaagaattcctgagactcttcctc
cattgcaaaataaagaaaggttttcagtgagacaagtagtcttttccatt
tcttcaaacccatacatcagtaaaacttcatacccattctttaataaaac
tatctcctctgctaatcttttagtaggagtatcaaagtttggtaacaaaa
agttgtttgattttatttgactcagaatctctatttccatctctttaatt
aattgattatgcatttcttcttagcaattaagagatagatttccccagca
taaatgacatgtcaaagataaaaaactttcttgattattttttaataaca
gagaagaaaatagcagcgctaataatatagtgaggtgaatatcattttaa
aaattgaatatttcattaaatatttctgtaagttgtgtgtcttaggatga
gccaaaggggagaaaactaaaacagaaaatactgactttagctgaaatac
ccaacaaagaggagatagaacctgtagagaccactttcattagataggca
gggcccccaacatctctttgcaaaggaaagacggggacaaaaaatggaac
agagactgaaggaaaggccatccagagacctacccacctagggatccatc
tcatctgcagtcacaaactctgacactattgctgacaccaagaagtgctt
actgacaggagcttggtatggctgtttcctgagaggttctaccagcacca
gaccaaaacagatgcagatactcacggctaaccattgatctgaacctgag
gaccacaatggaagagctaaggaaaggactgaaggaactgaaggggattg
caacccccacaggaagaacaaatcactaactgggaccatccagagctccc
agagactaaccaccaagcaaagagttataacatggagggatcatgactca
gatacatatgtagcagagatgccttattctga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_25640980_25642076
seq2: B6Ng01-321J02.b_49_1140 (reverse)

seq1  GCTTTGTTGTACATTCAAGGCTGACTTAGTTAATTATCATTGGAAAACTT  50
      |||||||||||||| ||  |||||||||||| ||||||||||  ||||||
seq2  GCTTTGTTGTACATCCA--GCTGACTTAGTT-ATTATCATTG--AAACTT  45

seq1  TTT-CTTTCTTCCAATATTGTGCTGAACTCAACTATGTCTAAAATAAGCC  99
      ||| ||||||||||||| |||||||||||| |||||||||||||||||||
seq2  TTTCCTTTCTTCCAATA-TGTGCTGAACTC-ACTATGTCTAAAATAAGCC  93

seq1  ACATGGTGTCAGACTCCAGAAGTCGGAA-CCAGCACCAGCTAACTAAATT  148
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  ACATGGTGTCAGACTCCAGAAGTCGGAACCCAGCACCAGCTAACTAAATT  143

seq1  CATATTCAAACAAGTTTCCTTCTTGCCTTTCTGCAGATCATTTTGCTACT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTCAAACAAGTTTCCTTCTTGCCTTTCTGCAGATCATTTTGCTACT  193

seq1  GACCATGAGACACTTTTAGAGACTCCCACAGGTGATGAGAATTCAGCAGA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCATGAGACACTTTTAGAGACTCCCACAGGTGATGAGAATTCAGCAGA  243

seq1  AGCCATCCTTCAGTTTGATGTTGGACCTCAAGCTGGTGATGTGCAGCACA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATCCTTCAGTTTGATGTTGGACCTCAAGCTGGTGATGTGCAGCACA  293

seq1  ATGGCCAATGTTGGGCAGTGGCATTCCTAAGCAGCTCCTTCCAGTCATGC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCCAATGTTGGGCAGTGGCATTCCTAAGCAGCTCCTTCCAGTCATGC  343

seq1  AAGCATAAGATGGCAGATCCAATGGTTTCCTCTGTTCTGTCTTGCTATGT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATAAGATGGCAGATCCAATGGTTTCCTCTGTTCTGTCTTGCTATGT  393

seq1  TTTTATGTTTGCTATGATATGCATTCTTGACTTACTATATTTTCAAGATG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATGTTTGCTATGATATGCATTCTTGACTTACTATATTTTCAAGATG  443

seq1  AGGTGGCATTGTAAATACACAAAACCAGCAGAAATTAAGAGAACAAAATA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGCATTGTAAATACACAAAACCAGCAGAAATTAAGAGAACAAAATA  493

seq1  TGTTGAACTATGTATATAATGGATAATGACCTACTTACAAGAACTAGTAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGAACTATGTATATAATGGATAATGACCTACTTACAAGAACTAGTAT  543

seq1  ACATACTCCATTGAACTTATTTTAAAAAGAAAAACATTTATTTAATTGAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACTCCATTGAACTTATTTTAAAAAGAAAAACATTTATTTAATTGAA  593

seq1  TGTTTATATGTATGAGTGTTTTACCCATATGTTTAGGTACACCATGTGTG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTATATGTATGAGTGTTTTACCCATATGTTTAGGTACACCATGTGTG  643

seq1  TGCAGTGCCTGTTGATGGAAGAAGAGGATGTTGAACACCCTGGAACTGGG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTGCCTGTTGATGGAAGAAGAGGATGTTGAACACCCTGGAACTGGG  693

seq1  ATTACAGTTTGGAATCACTCTGTCAGTGCTGGGAACCAAAACCAGAGATG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACAGTTTGGAATCACTCTGTCAGTGCTGGGAACCAAAACCAGAGATG  743

seq1  TAAAAGCTCTTGTAACCACTGAGCCATTTCTGTAGCCCCAAATTAAACCT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGCTCTTGTAACCACTGAGCCATTTCTGTAGCCCCAAATTAAACCT  793

seq1  TTCAGACTTCTTTACCCTAAGTAATCTCAAGCATCCTTTCTATTCTGAGA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGACTTCTTTACCCTAAGTAATCTCAAGCATCCTTTCTATTCTGAGA  843

seq1  GTGATAATGTTGATTATACTTATTCTGCTGTACTACTGGGCATAGAAACG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATAATGTTGATTATACTTATTCTGCTGTACTACTGGGCATAGAAACG  893

seq1  TATTCTTTCCAGTAACTGATTTCTCTCTTGGCTACTATTCTGTACTATGG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTTTCCAGTAACTGATTTCTCTCTTGGCTACTATTCTGTACTATGG  943

seq1  TCAGTGTTTTTTAAAATGGTGCCAGAAATAAGTTTTTGTACAAAGCAAGG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGTTTTTTAAAATGGTGCCAGAAATAAGTTTTTGTACAAAGCAAGG  993

seq1  GCTTAAGACTTTCGTTATAACATAGTGGAGGTTGAGGGTCAACTTGACTC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAAGACTTTCGTTATAACATAGTGGAGGTTGAGGGTCAACTTGACTC  1043

seq1  TCACAAGGTGAAATCAATAGGTAGAATATGCCTAGGTGTCATTGAAGAA  1097
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAAGGTGAAATCAATAGGTAGAATATGCCTAGGTGTCATTGAAGAA  1092


seq1: chr1_25532855_25533936
seq2: B6Ng01-321J02.g_67_1148

seq1  GAATTCCAAAGAAAACTCCAGAGAAAGGCCCTGCTCAACAATTCAAAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAAGAAAACTCCAGAGAAAGGCCCTGCTCAACAATTCAAAGAA  50

seq1  TTTATAGGAGACTGAAGAACTCCAAACAATGGAATCAATTTCTCCACAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAGGAGACTGAAGAACTCCAAACAATGGAATCAATTTCTCCACAGA  100

seq1  CTGGAGCCTTCTCCCCCGTTGCTTCTTAAGAATTCCTGAGACTCTTCCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGCCTTCTCCCCCGTTGCTTCTTAAGAATTCCTGAGACTCTTCCTC  150

seq1  CATTGCAAAATAAAGAAAGGTTTTCAGTGAGACAAGTAGTCTTTTCCATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCAAAATAAAGAAAGGTTTTCAGTGAGACAAGTAGTCTTTTCCATT  200

seq1  TCTTCAAACCCATACATCAGTAAAACTTCATACCCATTCTTTAATAAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAAACCCATACATCAGTAAAACTTCATACCCATTCTTTAATAAAAC  250

seq1  TATCTCCTCTGCTAATCTTTTAGTAGGAGTATCAAAGTTTGGTAACAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCCTCTGCTAATCTTTTAGTAGGAGTATCAAAGTTTGGTAACAAAA  300

seq1  AGTTGTTTGATTTTATTTGACTCAGAATCTCTATTTCCATCTCTTTAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTTTGATTTTATTTGACTCAGAATCTCTATTTCCATCTCTTTAATT  350

seq1  AATTGATTATGCATTTCTTCTTAGCAATTAAGAGATAGATTTCCCCAGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGATTATGCATTTCTTCTTAGCAATTAAGAGATAGATTTCCCCAGCA  400

seq1  TAAATGACATGTCAAAGATAAAAAACTTTCTTGATTATTTTTTAATAACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGACATGTCAAAGATAAAAAACTTTCTTGATTATTTTTTAATAACA  450

seq1  GAGAAGAAAATAGCAGCGCTAATAATATAGTGAGGTGAATATCATTTTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGAAAATAGCAGCGCTAATAATATAGTGAGGTGAATATCATTTTAA  500

seq1  AAATTGAATATTTCATTAAATATTTCTGTAAGTTGTGTGTCTTAGGATGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGAATATTTCATTAAATATTTCTGTAAGTTGTGTGTCTTAGGATGA  550

seq1  GCCAAAGGGGAGAAAACTAAAACAGAAAATACTGACTTTAGCTGAAATAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAAGGGGAGAAAACTAAAACAGAAAATACTGACTTTAGCTGAAATAC  600

seq1  CCAACAAAGAGGAGATAGAACCTGTAGAGACCACTTTCATTAGATAGGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACAAAGAGGAGATAGAACCTGTAGAGACCACTTTCATTAGATAGGCA  650

seq1  GGGCCCCCAACATCTCTTTGCAAAGGAAAGACGGGGACAAAAAATGGAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCCCCAACATCTCTTTGCAAAGGAAAGACGGGGACAAAAAATGGAAC  700

seq1  AGAGACTGAAGGAAAGGCCATCCAGAGACCTACCCACCTAGGGATCCATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACTGAAGGAAAGGCCATCCAGAGACCTACCCACCTAGGGATCCATC  750

seq1  TCATCTGCAGTCACAAACTCTGACACTATTGCTGACACCAAGAAGTGCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTGCAGTCACAAACTCTGACACTATTGCTGACACCAAGAAGTGCTT  800

seq1  ACTGACAGGAGCTTGGTATGGCTGTTTCCTGAGAGGTTCTACCAGCACCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACAGGAGCTTGGTATGGCTGTTTCCTGAGAGGTTCTACCAGCACCA  850

seq1  GACCAAAACAGATGCAGATACTCACGGCTAACCATTGATCTGAACCTGAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAAAACAGATGCAGATACTCACGGCTAACCATTGATCTGAACCTGAG  900

seq1  GACCACAATGGAAGAGCTAAGGGAAGGACTGAAGGAACTGAAGGGGATTG  950
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GACCACAATGGAAGAGCTAAGGAAAGGACTGAAGGAACTGAAGGGGATTG  950

seq1  CAA-CCCCACAGGAAGAACAAATCAACTAACT-GGACCATCCAGAGCTCC  998
      ||| |||||||||||||||||||| ||||||| |||||||||||||||||
seq2  CAACCCCCACAGGAAGAACAAATC-ACTAACTGGGACCATCCAGAGCTCC  999

seq1  CAGAGACTAAACCACCAAGCAAAGAG-TAT-ACATGGAGGGATCATGACT  1046
      |||||||| ||||||||||||||||| ||| |||||||||||||||||||
seq2  CAGAGACT-AACCACCAAGCAAAGAGTTATAACATGGAGGGATCATGACT  1048

seq1  CCAGATACATATGTAGCAGAGGATGGCCTTA-TCTGA  1082
       ||||||||||||||||||| ||| |||||| |||||
seq2  -CAGATACATATGTAGCAGA-GAT-GCCTTATTCTGA  1082


| Home | SequenceCutter | Blast | Download |