BAC Information

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BAC

Clone NameB6Ng01-321J05
Chromosome1 (Build37)
Map Location 72,271,929 - 72,371,989
singlet/doubletdoublet
Overlap genePecr, Tmem169, Xrcc5
Upstream geneAbca12, LOC629101, Atic, Fn1, LOC100042814, Gabarapl2-ps1_652.1, LOC383528, LOC675667, EG667931, EG433319, LOC667937, LOC100043255, Mreg
Downstream geneMarch4, Smarcal1, Ankar, Rpl37a, Igfbp2, Igfbp5, LOC672187, LOC100042860, Tnp1, 1700027A15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-321J05.bB6Ng01-321J05.g
ACCGA110642GA110643
length1,0521,144
definitionB6Ng01-321J05.b B6Ng01-321J05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,271,929 - 72,272,979)(72,370,830 - 72,371,989)
sequence
gaattccagagcagccagggttacataatgaatgtgaagagagagcccct
gccctggtcctcagaaacttacatcttccccacctgactctcccacctgt
ttgatgtcctactacttcagatcatcttaaccttgaatcaggccagggcc
cctccccaattgattccgggggtgttcgcatcacgatgtacctaaggctt
agtcacccaaaaatttgctgaaaacttactttttttttttttttttttgc
gcacctgataagggctggcgcactgagaaaagtccagatgatactacagc
caataaagagagcagactggagtaaaagagtcaaaaagctgaattagctg
tgaatgcctgggcgacagaacatcccaggatcgcgcttgtgatgggctca
ggagaagcttttggtagttaaatagccaagtgagaaaggggaggatacgg
tgtcaagtcacatacagcctcaggactggaggaaacagcacggacgaaga
gcagactgcctgaatcgaaaccaaccctcagctcctcaggctacctgttc
ccacctcgctttcctctgtggaggaagaagcgtaggtgggccgctttgag
actgccaggaggaggcggctcagtgcgaaccgccacgcccctcgtggggc
ggggcatgcaaataatactcggcgtgcgcgctcgagaacgccgggagagc
cggggtcgtggacgttgtagctgaagctgtgggtgctggagtgggagtga
ggcgtggaggatgcaagacgcgcacgggaggaggaaaggagccgcgggga
aggcaggaagtgagggttgcgagcggtcaccacgaagtttaatgtgtctc
gcggacgcagagcacggctgcatggtgtgtgctgggtatcgcttctcggg
ccttttggctaagatcaagtgtagtatctgttcttatcaggtttaatatc
tgatacgtcctctatctgaggacaatatttcagtggattttggaactaag
gagtggaataaggagctggctccgtcactccacgcatcgatctggtatgc
ag
gaattcttgaggaagagggactgcagccatattataaacagttgttaaag
cctctgcccgcatgccttttagatgaaaagctatacagagattaaatcaa
aagggagagcagtaagagaggcagtaattatactctgaatagctcgcaca
tgaattgtcagcttcttacataagcatatttatctgcctgggaacacggc
tttaaaaaaaagcactttactacctaccgatttataggctacaatcttta
tagacaagttggggccaatggtcagttggcagggccagggcatggaacgc
ctctcaatcttcttaaagacgcacagttgtcgtagactctcacttaataa
agaaaaacacataatgaaagacaattttccaatgttaatttagaggagat
ggtctccttattttactagaatcagacgtgtgttgttgttgattataaag
acagaaagagcagcaggcggtaggaaaatgagaaccacagctgggaagga
gccagagacaggtgagctggcttgggagggagaactccagtcactgtcct
gacagggaaagggactgctgggccctcctctagtagatcgtttctttccg
ctataccaaagattcttaacatttacgctggaccaaggacaccactgagg
agatgacaaaaccacattcatcaatgagctggcacacaatggaaggcgct
cagcacctcccagaaaacaagaggatatgagcccctgctctggagtatca
caggcaaggtaccagcctgcagctctgctcacagttcattacttaatgcc
aactccctaaataaaagacaggatggtttcataggcacaccacagagagg
gttacatcaatactacccagggaataaaggaatccctagcctgtttggtg
gaggagggcagggagaagataaatgtaacatagagcactgcttcatttaa
acaggggtgacattcagccaagtgtggtgacacacacctttcatctcagc
cacttggagcagagcaagctgatctctgagtttgagcagctgtctacaag
ggtgagtccagacagtaaccctgtctcagagtgggggcggggagaaataa
agtcagctagttctattacctttagtcaaccgtaacgaagacca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_72271929_72272979
seq2: B6Ng01-321J05.b_44_1095

seq1  GAATTCCAGAGCAGCCAGGGTTACATAATGAATGTGAAGAGAGAGCCCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAGCAGCCAGGGTTACATAATGAATGTGAAGAGAGAGCCCCT  50

seq1  GCCCTGGTCCTCAGAAACTTACATCTTCCCCACCTGACTCTCCCACCTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGGTCCTCAGAAACTTACATCTTCCCCACCTGACTCTCCCACCTGT  100

seq1  TTGATGTCCTACTACTTCAGATCATCTTAACCTTGAATCAGGCCAGGGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGTCCTACTACTTCAGATCATCTTAACCTTGAATCAGGCCAGGGCC  150

seq1  CCTCCCCAATTGATTCCGGGGGTGTTCGCATCACGATGTACCTAAGGCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCCAATTGATTCCGGGGGTGTTCGCATCACGATGTACCTAAGGCTT  200

seq1  AGTCACCCAAAAATTTGCTGAAAACTTACTTTTTTTTTTTTTTTTTTTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACCCAAAAATTTGCTGAAAACTTACTTTTTTTTTTTTTTTTTTTGC  250

seq1  GCACCTGATAAGGGCTGGCGCACTGAGAAAAGTCCAGATGATACTACAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCTGATAAGGGCTGGCGCACTGAGAAAAGTCCAGATGATACTACAGC  300

seq1  CAATAAAGAGAGCAGACTGGAGTAAAAGAGTCAAAAAGCTGAATTAGCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAAAGAGAGCAGACTGGAGTAAAAGAGTCAAAAAGCTGAATTAGCTG  350

seq1  TGAATGCCTGGGCGACAGAACATCCCAGGATCGCGCTTGTGATGGGCTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGCCTGGGCGACAGAACATCCCAGGATCGCGCTTGTGATGGGCTCA  400

seq1  GGAGAAGCTTTTGGTAGTTAAATAGCCAAGTGAGAAAGGGGAGGATACGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAGCTTTTGGTAGTTAAATAGCCAAGTGAGAAAGGGGAGGATACGG  450

seq1  TGTCAAGTCACATACAGCCTCAGGACTGGAGGAAACAGCACGGACGAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAAGTCACATACAGCCTCAGGACTGGAGGAAACAGCACGGACGAAGA  500

seq1  GCAGACTGCCTGAATCGAAACCAACCCTCAGCTCCTCAGGCTACCTGTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGACTGCCTGAATCGAAACCAACCCTCAGCTCCTCAGGCTACCTGTTC  550

seq1  CCACCTCGCTTTCCTCTGTGGAGGAAGAAGCGTAGGTGGGCCGCTTTGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTCGCTTTCCTCTGTGGAGGAAGAAGCGTAGGTGGGCCGCTTTGAG  600

seq1  ACTGCCAGGAGGAGGCGGCTCAGTGCGAACCGCCACGCCCCTCGTGGGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCCAGGAGGAGGCGGCTCAGTGCGAACCGCCACGCCCCTCGTGGGGC  650

seq1  GGGGCATGCAAATAATACTCGGCGTGCGCGCTCGAGAACGCCGGGAGAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCATGCAAATAATACTCGGCGTGCGCGCTCGAGAACGCCGGGAGAGC  700

seq1  CGGGGTCGTGGACGTTGTAGCTGAAGCTGTGGGTGCTGGAGTGGGAGTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGGTCGTGGACGTTGTAGCTGAAGCTGTGGGTGCTGGAGTGGGAGTGA  750

seq1  GGCGTGGAGGATGCAAGACGCGCACGGGAGGAGG-AAGGAGCCGCGGGGA  799
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GGCGTGGAGGATGCAAGACGCGCACGGGAGGAGGAAAGGAGCCGCGGGGA  800

seq1  AGGCAGGAAGTGAGGGTTGCGAGCGGTCACCACGAAG-TTAATGTGTCTC  848
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AGGCAGGAAGTGAGGGTTGCGAGCGGTCACCACGAAGTTTAATGTGTCTC  850

seq1  GCGGACGCAGAGCACGGCTGCATGGTGTGTGCTGGGTATCGCTTCTC-GG  897
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GCGGACGCAGAGCACGGCTGCATGGTGTGTGCTGGGTATCGCTTCTCGGG  900

seq1  CCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCA-GTTTAATATC  946
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGGTTTAATATC  950

seq1  TGATACGTCCTCTATCTGAGGACAATATATTAAGTGGATTTTTGGAACT-  995
      |||||||||||||||||||||||||||| || |||||| |||||||||| 
seq2  TGATACGTCCTCTATCTGAGGACAATAT-TTCAGTGGA-TTTTGGAACTA  998

seq1  AGGAGTTGGAAT-AGGAGCTTGCTCCGTCCACTCCACGCATCGATCTGGT  1044
      ||||| |||||| ||||||| ||||||| |||||||||||||||||||||
seq2  AGGAG-TGGAATAAGGAGCTGGCTCCGT-CACTCCACGCATCGATCTGGT  1046

seq1  ATTGCAG  1051
      | |||||
seq2  A-TGCAG  1052

seq1: chr1_72370830_72371989
seq2: B6Ng01-321J05.g_66_1209 (reverse)

seq1  TGGTCTTCTGTTCTGTTTGACTAAAGGTAAATAGAACTAGGCTTGACTTT  50
      |||||||| |||  | |||||||||||| |||||||||||   |||| ||
seq2  TGGTCTTC-GTTACGGTTGACTAAAGGT-AATAGAACTAG--CTGAC-TT  45

seq1  TATTTCTCCCCGCCCCAACCTCTGAGACAGGGTTTTACTGTCCTGGAACT  100
      |||||||||||||||| | |||||||||||||  ||||||| |||| |||
seq2  TATTTCTCCCCGCCCCCA-CTCTGAGACAGGG--TTACTGT-CTGG-ACT  90

seq1  CACCC-TGTAGACCAGGCTGGCCTCAAACTCAGAGATCAGCTTGCCTCTG  149
      ||||| |||||||   ||||  |||||||||||||||||||||| |||||
seq2  CACCCTTGTAGAC--AGCTG--CTCAAACTCAGAGATCAGCTTG-CTCTG  135

seq1  CCTCCCAAGTGGCTGAGATGAAAGGTGTGTGTCACCACACTTGGCTGAAT  199
      |   ||||||||||||||||||||||||||||||||||||||||||||||
seq2  C--TCCAAGTGGCTGAGATGAAAGGTGTGTGTCACCACACTTGGCTGAAT  183

seq1  GTCACCCCTGTTTAAATGAAGCAGTGCTCTATGTTACATTTATCTTCTCC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACCCCTGTTTAAATGAAGCAGTGCTCTATGTTACATTTATCTTCTCC  233

seq1  CTGCCCTCCTCCACCAAACAGGCTAGGGATTCCTTTATTCCCTGGGTAGT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCTCCTCCACCAAACAGGCTAGGGATTCCTTTATTCCCTGGGTAGT  283

seq1  ATTGATGTAACCCTCTCTGTGGTGTGCCTATGAAACCATCCTGTCTTTTA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATGTAACCCTCTCTGTGGTGTGCCTATGAAACCATCCTGTCTTTTA  333

seq1  TTTAGGGAGTTGGCATTAAGTAATGAACTGTGAGCAGAGCTGCAGGCTGG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGGAGTTGGCATTAAGTAATGAACTGTGAGCAGAGCTGCAGGCTGG  383

seq1  TACCTTGCCTGTGATACTCCAGAGCAGGGGCTCATATCCTCTTGTTTTCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTGCCTGTGATACTCCAGAGCAGGGGCTCATATCCTCTTGTTTTCT  433

seq1  GGGAGGTGCTGAGCGCCTTCCATTGTGTGCCAGCTCATTGATGAATGTGG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGTGCTGAGCGCCTTCCATTGTGTGCCAGCTCATTGATGAATGTGG  483

seq1  TTTTGTCATCTCCTCAGTGGTGTCCTTGGTCCAGCGTAAATGTTAAGAAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTCATCTCCTCAGTGGTGTCCTTGGTCCAGCGTAAATGTTAAGAAT  533

seq1  CTTTGGTATAGCGGAAAGAAACGATCTACTAGAGGAGGGCCCAGCAGTCC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGTATAGCGGAAAGAAACGATCTACTAGAGGAGGGCCCAGCAGTCC  583

seq1  CTTTCCCTGTCAGGACAGTGACTGGAGTTCTCCCTCCCAAGCCAGCTCAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCCTGTCAGGACAGTGACTGGAGTTCTCCCTCCCAAGCCAGCTCAC  633

seq1  CTGTCTCTGGCTCCTTCCCAGCTGTGGTTCTCATTTTCCTACCGCCTGCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTCTGGCTCCTTCCCAGCTGTGGTTCTCATTTTCCTACCGCCTGCT  683

seq1  GCTCTTTCTGTCTTTATAATCAACAACAACACACGTCTGATTCTAGTAAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTTCTGTCTTTATAATCAACAACAACACACGTCTGATTCTAGTAAA  733

seq1  ATAAGGAGACCATCTCCTCTAAATTAACATTGGAAAATTGTCTTTCATTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGGAGACCATCTCCTCTAAATTAACATTGGAAAATTGTCTTTCATTA  783

seq1  TGTGTTTTTCTTTATTAAGTGAGAGTCTACGACAACTGTGCGTCTTTAAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTTTCTTTATTAAGTGAGAGTCTACGACAACTGTGCGTCTTTAAG  833

seq1  AAGATTGAGAGGCGTTCCATGCCCTGGCCCTGCCAACTGACCATTGGCCC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTGAGAGGCGTTCCATGCCCTGGCCCTGCCAACTGACCATTGGCCC  883

seq1  CAACTTGTCTATAAAGATTGTAGCCTATAAATCGGTAGGTAGTAAAGTGC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTGTCTATAAAGATTGTAGCCTATAAATCGGTAGGTAGTAAAGTGC  933

seq1  TTTTTTTTAAAGCCGTGTTCCCAGGCAGATAAATATGCTTATGTAAGAAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTAAAGCCGTGTTCCCAGGCAGATAAATATGCTTATGTAAGAAG  983

seq1  CTGACAATTCATGTGCGAGCTATTCAGAGTATAATTACTGCCTCTCTTAC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACAATTCATGTGCGAGCTATTCAGAGTATAATTACTGCCTCTCTTAC  1033

seq1  TGCTCTCCCTTTTGATTTAATCTCTGTATAGCTTTTCATCTAAAAGGCAT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTCCCTTTTGATTTAATCTCTGTATAGCTTTTCATCTAAAAGGCAT  1083

seq1  GCGGGCAGAGGCTTTAACAACTGTTTATAATATGGCTGCAGTCCCTCTTC  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGGCAGAGGCTTTAACAACTGTTTATAATATGGCTGCAGTCCCTCTTC  1133

seq1  CTCAAGAATTC  1160
      |||||||||||
seq2  CTCAAGAATTC  1144