BAC Information

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BAC

Clone NameB6Ng01-321J09
Chromosome1 (Build37)
Map Location 156,153,695 - 156,259,321
singlet/doubletdoublet
Overlap geneCacna1e
Upstream geneLamc1, EG667795, EG626058, 1700012A16Rik, Dhx9, Npl, LOC626096, Rgs8, Rgs16, Rnasel, LOC100043347, Rgsl1, 5830403L16Rik, EG433365, Teddm1, LOC100043357, Glul, LOC100043359
Downstream geneLOC671336, Ier5, Mr1, Stx6, EG667867, BC034090, Xpr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-321J09.bB6Ng01-321J09.g
ACCGA110650GA110651
length1,1281,105
definitionB6Ng01-321J09.b B6Ng01-321J09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(156,153,695 - 156,154,824)(156,258,194 - 156,259,321)
sequence
gaattcttactgaaaactttggagtttctgtttggtttttactagggtta
cttggtaataatgtggtgagatgtgaggtctggatgctcacgtggcagct
tgtggcaacaatcaactgaataaaggattgaaggcaaccatggagccaca
gtccccacctgattctccacgtgtagccacagggacacttcagggaaggg
gattttgtatctgtgttatatagagactgaggagaacacatgcatatagc
aggaggggctctctctgccttcctaaaagattttccatgaagggtctggc
agaagcatttttaaaaagtcagcatttgcaaagggcctgtcagttctggt
tcacaccgatttcctgtgtaaatagcaagcttaagagactcgtgggtagg
acctaccaccagtagactcatcccctgacttactgtccaggaatcttctc
taatgaccttgaaatgcaaattacagttaatataaagcaagagtttggaa
ccctggtaattagcaaacccagttgttgactctgtaaaggaaaaaaaaaa
ctgatgcagagaagaaaattagtttgttcccttcatggttttaaatagtt
cttgcaatgtcttatttttgtttgggcttcttgtgatgcaatgctacaaa
ggggataaaaaataatatttatttaaatcatcatctctcctttatgattt
ttttctttaggccatgtctaattcctacatgttatatacagcaaagcata
gatgttcctcatgtggaatcggagctgggataatcaagctctcattaact
agcacacatttttttttttcctttctgttttgcttccatgtttacttttt
gtgactcagccttcttgtgagaaaactccgatatcagactgcctaagttc
attgctgtttacataaattttgagccagtaataaactcctctggacccat
cttctcaagttttttgcaagaatgattgctgcctcagtggcttgctgtta
tttcttcttataaatttaaaaaatacatattcatattcttacatatgtaa
tacgttaatatgtcgagatttgtcttctttaatcgtggagcgagacccta
aactggtataaggaggcataagaagact
gaattctttgtctccactcagaaaaatgcacccatgttccagcgcatgga
gccctcatcactgcctcaggagatcattgctaatgccaaagccctgcctt
atctccagcaggaccctgtttctggcctgtgagtaaaaaccacatgaagg
gtctgtgggacgcctgtttgcattctgccaccatggttcaggcccgggaa
tcatactctgagccagttccttcctgaggctgactgtctcaaaatggctt
gtcagcaggagtaagagaagaaatgagccaggcatgtgtgatgccgcaac
tggtatcagaggcagtagatgcagcagaaggttggtagcaaaaggtgctg
actcacgttataatgcactaacaccttagctatagttctgttggggagaa
ttagcataatctcaagggtttagttgtcttctcacaatggatctggcagc
atggatgtagagattgctgagcagaagggggaaagagaagcaaccgtcac
tggattctttgcttctggggatgacagttgtagcaatacagtttgcttag
ctctcttgattctgccataccctggagatgtatatattgctatcactact
tttcaaatgaacagacagggactatgactgagaggaggcagcacctaggt
tttcaaatcagtcatttctgattctagaggctttctactatatcttagac
tctggaatgaccaaaaagaccttataaatggaaagaaaaaaaaatcagac
cctgaatggaagaatggtctagtgtttctaaagcttacctactggttgac
tgttagtcagagatggtctctcatagcatacatatcccagtatgtcattg
ttttccagttgtcaccgagcggggagtggaagccaaggacacatgctcct
cttctcattggaaatgaagttatgtggttgggtttaagcagtcttgcttg
gagaagtgggaatcactaagaaggacattccactaatgatcagaaaggag
acccagagttgggatgagctcatgagcactactgggaggagtcatacatc
attcttcacactgtgtatgaactttgttctgccatctttttctgactcat
atcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_156153695_156154824
seq2: B6Ng01-321J09.b_43_1170

seq1  GAATTCTTACTGAAAACTTTGGAGTTTCTGTTTGGTTTTTACTAGGGTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTACTGAAAACTTTGGAGTTTCTGTTTGGTTTTTACTAGGGTTA  50

seq1  CTTGGTAATAATGTGGTGAGATGTGAGGTCTGGATGCTCACGTGGCAGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTAATAATGTGGTGAGATGTGAGGTCTGGATGCTCACGTGGCAGCT  100

seq1  TGTGGCAACAATCAACTGAATAAAGGATTGAAGGCAACCATGGAGCCACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCAACAATCAACTGAATAAAGGATTGAAGGCAACCATGGAGCCACA  150

seq1  GTCCCCACCTGATTCTCCACGTGTAGCCACAGGGACACTTCAGGGAAGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCCACCTGATTCTCCACGTGTAGCCACAGGGACACTTCAGGGAAGGG  200

seq1  GATTTTGTATCTGTGTTATATAGAGACTGAGGAGAACACATGCATATAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTGTATCTGTGTTATATAGAGACTGAGGAGAACACATGCATATAGC  250

seq1  AGGAGGGGCTCTCTCTGCCTTCCTAAAAGATTTTCCATGAAGGGTCTGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGGGCTCTCTCTGCCTTCCTAAAAGATTTTCCATGAAGGGTCTGGC  300

seq1  AGAAGCATTTTTAAAAAGTCAGCATTTGCAAAGGGCCTGTCAGTTCTGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCATTTTTAAAAAGTCAGCATTTGCAAAGGGCCTGTCAGTTCTGGT  350

seq1  TCACACCGATTTCCTGTGTAAATAGCAAGCTTAAGAGACTCGTGGGTAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACCGATTTCCTGTGTAAATAGCAAGCTTAAGAGACTCGTGGGTAGG  400

seq1  ACCTACCACCAGTAGACTCATCCCCTGACTTACTGTCCAGGAATCTTCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTACCACCAGTAGACTCATCCCCTGACTTACTGTCCAGGAATCTTCTC  450

seq1  TAATGACCTTGAAATGCAAATTACAGTTAATATAAAGCAAGAGTTTGGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGACCTTGAAATGCAAATTACAGTTAATATAAAGCAAGAGTTTGGAA  500

seq1  CCCTGGTAATTAGCAAACCCAGTTGTTGACTCTGTAAAGGAAAAAAAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGTAATTAGCAAACCCAGTTGTTGACTCTGTAAAGGAAAAAAAAAA  550

seq1  CTGATGCAGAGAAGAAAATTAGTTTGTTCCCTTCATGGTTTTAAATAGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGCAGAGAAGAAAATTAGTTTGTTCCCTTCATGGTTTTAAATAGTT  600

seq1  CTTGCAATGTCTTATTTTTGTTTGGGCTTCTTGTGATGCAATGCTACAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCAATGTCTTATTTTTGTTTGGGCTTCTTGTGATGCAATGCTACAAA  650

seq1  GGGGATAAAAAATAATATTTATTTAAATCATCATCTCTCCTTTATGATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGATAAAAAATAATATTTATTTAAATCATCATCTCTCCTTTATGATTT  700

seq1  TTTTCTTTAGGCCATGTCTAATTCCTACATGTTATATACAGCAAAGCATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTAGGCCATGTCTAATTCCTACATGTTATATACAGCAAAGCATA  750

seq1  GATGTTCCTCATGTGGAATCGGAGCTGGGATAATCAAGCTCTCATTAACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTCCTCATGTGGAATCGGAGCTGGGATAATCAAGCTCTCATTAACT  800

seq1  AGCACACA-TTTTTTTTTTCCTTTCTGTTTTGCTTCCATGTTTACTTTTT  849
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AGCACACATTTTTTTTTTTCCTTTCTGTTTTGCTTCCATGTTTACTTTTT  850

seq1  GTGACTCAGCCTTCTTGTGAGAAAACTCCGATATCAGACTGCCTAAGTTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACTCAGCCTTCTTGTGAGAAAACTCCGATATCAGACTGCCTAAGTTC  900

seq1  ATTGCTGTTTACATAAATTTTGAGCCAGTAATAAACTCCTCTGGACCCAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTGTTTACATAAATTTTGAGCCAGTAATAAACTCCTCTGGACCCAT  950

seq1  CTTCTCAAGTTTTTTGCAAGAATGATTGCTGCCTCAGTGGCTTGCTG-TA  998
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CTTCTCAAGTTTTTTGCAAGAATGATTGCTGCCTCAGTGGCTTGCTGTTA  1000

seq1  TTTC-TCTTATAAATTT-AAAAATACATATTCATAATTCTTACATATGTA  1046
      |||| |||||||||||| |||||||||||||||| |||||||||||||||
seq2  TTTCTTCTTATAAATTTAAAAAATACATATTCAT-ATTCTTACATATGTA  1049

seq1  ATACG-TAATATGTCGAAGATTTGTC-TCTTTAATCGTGGAGCCGGGAAG  1094
      ||||| |||||||||| ||||||||| ||||||||||||||||     ||
seq2  ATACGTTAATATGTCG-AGATTTGTCTTCTTTAATCGTGGAGC----GAG  1094

seq1  ACACTAAAACTGGTATAAAGGAGGCAATAAG-AGACT  1130
      || || |||||||||| |||||||| ||||| |||||
seq2  ACCCT-AAACTGGTAT-AAGGAGGC-ATAAGAAGACT  1128

seq1: chr1_156258194_156259321
seq2: B6Ng01-321J09.g_65_1169 (reverse)

seq1  TAGATTATGAAGTCAGAAAAAGATTTGCAAGAACAAAGTTTCATACCACA  50
      |||| |||| |||||||||||||  ||  ||||||||| |||||| ||||
seq2  TAGA-TATG-AGTCAGAAAAAGA--TGGCAGAACAAAG-TTCATA-CACA  44

seq1  GTGTGAAAGAAATGAATGGTATGGACTCCTCCCAGTAGTGCTCCAATGGA  100
      |||||||   |||||   |||| ||||||||||||||||||||  || ||
seq2  GTGTGAA--GAATGA--TGTAT-GACTCCTCCCAGTAGTGCTC--AT-GA  86

seq1  GGCCTCATTCCCAAACTCTGGGTCTCCCTTTTCTGATCATTAGTGGAATT  150
      |  |||||  || ||||||||||||||  ||||||||||||||||||| |
seq2  G--CTCAT--CCCAACTCTGGGTCTCC--TTTCTGATCATTAGTGGAA-T  129

seq1  GTCCTTCTTAGTGATTCCCACTTCTCCAAGCAAGACCTGCTTAAACCCAA  200
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GTCCTTCTTAGTGATTCCCACTTCTCCAAGCAAGA-CTGCTTAAACCCAA  178

seq1  CCACATAACTTCATTTCCAATGAGAAGAGGAGCATGTGTCCCTTGGCTTC  250
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CCACATAACTTCATTTCCAATGAGAAGAGGAGCATGTGT-CCTTGGCTTC  227

seq1  CACTCCCCGCTCGGTGACAACTGGAAAACAATGACATACTGGGATATGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCCCGCTCGGTGACAACTGGAAAACAATGACATACTGGGATATGTA  277

seq1  TGCTATGAGAGACCATCTCTGACTAACAGTCAACCAGTAGGTAAGCCTTA  350
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TGCTATGAGAGACCATCTCTGACTAACAGTCAACCAGTAGGTAAGCTTTA  327

seq1  GAAACACTAGACCATTCTTCCATTCAGGGTCTGATTTTTTTTTCTTTCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACACTAGACCATTCTTCCATTCAGGGTCTGATTTTTTTTTCTTTCCA  377

seq1  TTTATAAGGTCTTTTTGGTCATTCCAGAGTCTAAGATATAGTAGAAAGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAAGGTCTTTTTGGTCATTCCAGAGTCTAAGATATAGTAGAAAGCC  427

seq1  TCTAGAATCAGAAATGACTGATTTGAAAACCTAGGTGCTGCCTCCTCTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGAATCAGAAATGACTGATTTGAAAACCTAGGTGCTGCCTCCTCTCA  477

seq1  GTCATAGTCCCTGTCTGTTCATTTGAAAAGTAGTGATAGCAATATATACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATAGTCCCTGTCTGTTCATTTGAAAAGTAGTGATAGCAATATATACA  527

seq1  TCTCCAGGGTATGGCAGAATCAAGAGAGCTAAGCAAACTGTATTGCTACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAGGGTATGGCAGAATCAAGAGAGCTAAGCAAACTGTATTGCTACA  577

seq1  ACTGTCATCCCCAGAAGCAAAGAATCCAGTGACGGTTGCTTCTCTTTCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCATCCCCAGAAGCAAAGAATCCAGTGACGGTTGCTTCTCTTTCCC  627

seq1  CCTTCTGCTCAGCAATCTCTACATCCATGCTGCCAGATCCATTGTGAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTGCTCAGCAATCTCTACATCCATGCTGCCAGATCCATTGTGAGAA  677

seq1  GACAACTAAACCCTTGAGATTATGCTAATTCTCCCCAACAGAACTATAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAACTAAACCCTTGAGATTATGCTAATTCTCCCCAACAGAACTATAGC  727

seq1  TAAGGTGTTAGTGCATTATAACGTGAGTCAGCACCTTTTGCTACCAACCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTGTTAGTGCATTATAACGTGAGTCAGCACCTTTTGCTACCAACCT  777

seq1  TCTGCTGCATCTACTGCCTCTGATACCAGTTGCGGCATCACACATGCCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTGCATCTACTGCCTCTGATACCAGTTGCGGCATCACACATGCCTG  827

seq1  GCTCATTTCTTCTCTTACTCCTGCTGACAAGCCATTTTGAGACAGTCAGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCATTTCTTCTCTTACTCCTGCTGACAAGCCATTTTGAGACAGTCAGC  877

seq1  CTCAGGAAGGAACTGGCTCAGAGTATGATTCCCGGGCCTGAACCATGGTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGAAGGAACTGGCTCAGAGTATGATTCCCGGGCCTGAACCATGGTG  927

seq1  GCAGAATGCAAACAGGCGTCCCACAGACCCTTCATGTGGTTTTTACTCAC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAATGCAAACAGGCGTCCCACAGACCCTTCATGTGGTTTTTACTCAC  977

seq1  AGGCCAGAAACAGGGTCCTGCTGGAGATAAGGCAGGGCTTTGGCATTAGC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAGAAACAGGGTCCTGCTGGAGATAAGGCAGGGCTTTGGCATTAGC  1027

seq1  AATGATCTCCTGAGGCAGTGATGAGGGCTCCATGCGCTGGAACATGGGTG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATCTCCTGAGGCAGTGATGAGGGCTCCATGCGCTGGAACATGGGTG  1077

seq1  CATTTTTCTGAGTGGAGACAAAGAATTC  1128
      ||||||||||||||||||||||||||||
seq2  CATTTTTCTGAGTGGAGACAAAGAATTC  1105