BAC Information

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BAC

Clone NameB6Ng01-321J24
Chromosome1 (Build37)
Map Location 87,577,602 - 87,688,922
singlet/doubletdoublet
Overlap geneSp100, A630001G21Rik
Upstream geneLOC100040213, LOC100039794, EG665338, Sp110, Sp140
Downstream geneCab39, Itm2c, 4933407L21Rik, Gpr55, Spata3, 2810459M11Rik, Psmd1, Htr2b, Armc9, B3gnt7, EG383538, Ncl, Snord82, Nmur1, 1700019O17Rik, LOC100040414, Ptma, Pde6d, Cops7b, Nppc, 4930429A22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-321J24.bB6Ng01-321J24.g
ACCGA110680GA110681
length8821,115
definitionB6Ng01-321J24.b B6Ng01-321J24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,688,331 - 87,688,922)(87,577,602 - 87,578,722)
sequence
gaattccacaaatacagtagacgggggttgctgacaccctatagtagggc
tcgggggtatagctcaggctatactataattatggtagattctggattca
gtcgtgggtagtttgtatgcacacaaagaaagctgagacaaagatgaggg
agatagagaagataacacgtatgaagtatccataacaatagagaagatca
ctcagacatgggctcaagccgatagaaagtctctattaccagccagtgac
tactctgggtgtttggggttcaagtatagtcctgagcctttctcaggtga
gtttgtttgtttatttatttatttattttacaactcaatggctctccccg
cccccctttttaagtacacacacacacacaaaaccatatcctggcttgtc
acacctcggttagcaagaacagtcatccagtctagttgcagaactacaaa
agccaaaaagcaagattagttcctttatggactttcccggaactatggac
tttgatggattaggtctttgttctctcttgtttttggcaggtattgctgc
ctctatcctgggtctcaggacctgaatggtactttcatcatggcatctgt
tgtgctaaggtctggaaacctgttacactataatcctagttctagcaaag
caaagactgtaaatttgaagccaacctgatctaagtagtgagttccaggt
ttctagcgccacatggcaagatcttgtctcaacacaccaccccctttaat
ttgtgtgatcttgttcgtatatgtatgtgtctgtgtgctcaagcatgtgt
cagtcaggtatagtagtagtgcacacctataaccctagcccttgggagtg
gtgggggggaaaattgaaaaaattcaaggtca
gaattcctatgaccattttagttctagattactggttttattttcccttt
tcgtcccagatacttctgacactgagagctctatcatcattagaagacgg
aaaaggacaggacgtaagaacaatttaaaattctagatgtagcaattact
tctctgtgttactaaagctctaaatcactctgatttttagatacccttta
aaaaaattaacctggtattttagatcattttgatgatgctttttgggttc
aagtgagtttaagatatttgctatgacacatctcaaaatattcaacagca
caagcccagtacaggctcattttttaccccagagaagaggatgaagttgg
tcctaagtgaagaagttcactttgttccacatgatcgtctagggccctga
ggtcttaaagatttactttgtcattcaccatgcccaccactccacaataa
acagaaatgggagcagatggtgcacaaataaatctctgaaggggcatgag
gcacgagaaacagacacagaagagaatgaccaccatagagttgtctccac
ccccagcactggggacagcttttggagcaagcttgaccagcagctctgat
ggaagcaaggttggcctgctgactggattgtctctgtgcctcccaaatag
actgcaggtctgtcctgccttctcacataggctgcaggattgctgacccc
taccacataaactggcaggattgtgccttcctacacactcatacagatcg
ctctgtgcatgcgtgcgtgcgtgcgtgcgtgctcctgcacatgtgagtag
aggccagagggtgatgttaccatcttaaatctttctacctcactttttga
gacaagagtggtctcgttgaccctggaactcactcactgattcagaaagg
gtggttggttgagcaggctttcgggtgtcctcctgcctctgtctcctcag
ctctgggattatagtacccacttctgcaacccaggtttttttttatagat
attttctcattgcatttccaatgatgaacctagtcttttacatggagtat
ggggggtcaggctcgagacttacagatggaagccatttctcagcctcttt
cagttttctcagaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_87688331_87688922
seq2: B6Ng01-321J24.b_46_637 (reverse)

seq1  CATGATGAAAGTACCATTCAGGTCCTGAGACCCAGGATAGAGGCAGCAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATGAAAGTACCATTCAGGTCCTGAGACCCAGGATAGAGGCAGCAAT  50

seq1  ACCTGCCAAAAACAAGAGAGAACAAAGACCTAATCCATCAAAGTCCATAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCCAAAAACAAGAGAGAACAAAGACCTAATCCATCAAAGTCCATAG  100

seq1  TTCCGGGAAAGTCCATAAAGGAACTAATCTTGCTTTTTGGCTTTTGTAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCGGGAAAGTCCATAAAGGAACTAATCTTGCTTTTTGGCTTTTGTAGT  150

seq1  TCTGCAACTAGACTGGATGACTGTTCTTGCTAACCGAGGTGTGACAAGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAACTAGACTGGATGACTGTTCTTGCTAACCGAGGTGTGACAAGCC  200

seq1  AGGATATGGTTTTGTGTGTGTGTGTGTACTTAAAAAGGGGGGCGGGGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATATGGTTTTGTGTGTGTGTGTGTACTTAAAAAGGGGGGCGGGGAGA  250

seq1  GCCATTGAGTTGTAAAATAAATAAATAAATAAACAAACAAACTCACCTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTGAGTTGTAAAATAAATAAATAAATAAACAAACAAACTCACCTGA  300

seq1  GAAAGGCTCAGGACTATACTTGAACCCCAAACACCCAGAGTAGTCACTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGCTCAGGACTATACTTGAACCCCAAACACCCAGAGTAGTCACTGG  350

seq1  CTGGTAATAGAGACTTTCTATCGGCTTGAGCCCATGTCTGAGTGATCTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTAATAGAGACTTTCTATCGGCTTGAGCCCATGTCTGAGTGATCTTC  400

seq1  TCTATTGTTATGGATACTTCATACGTGTTATCTTCTCTATCTCCCTCATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTGTTATGGATACTTCATACGTGTTATCTTCTCTATCTCCCTCATC  450

seq1  TTTGTCTCAGCTTTCTTTGTGTGCATACAAACTACCCACGACTGAATCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCTCAGCTTTCTTTGTGTGCATACAAACTACCCACGACTGAATCCA  500

seq1  GAATCTACCATAATTATAGTATAGCCTGAGCTATACCCCCGAGCCCTACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTACCATAATTATAGTATAGCCTGAGCTATACCCCCGAGCCCTACT  550

seq1  ATAGGGTGTCAGCAACCCCCGTCTACTGTATTTGTGGAATTC  592
      ||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGGTGTCAGCAACCCCCGTCTACTGTATTTGTGGAATTC  592

seq1: chr1_87577602_87578722
seq2: B6Ng01-321J24.g_66_1180

seq1  GAATTCCTATGACCATTTTAGTTCTAGATTACTGGTTTTATTTTCCCTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTATGACCATTTTAGTTCTAGATTACTGGTTTTATTTTCCCTTT  50

seq1  TCGTCCCAGATACTTCTGACACTGAGAGCTCTATCATCATTAGAAGACGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTCCCAGATACTTCTGACACTGAGAGCTCTATCATCATTAGAAGACGG  100

seq1  AAAAGGACAGGACGTAAGAACAATTTAAAATTCTAGATGTAGCAATTACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGACAGGACGTAAGAACAATTTAAAATTCTAGATGTAGCAATTACT  150

seq1  TCTCTGTGTTACTAAAGCTCTAAATCACTCTGATTTTTAGATACCCTTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTGTTACTAAAGCTCTAAATCACTCTGATTTTTAGATACCCTTTA  200

seq1  AAAAAATTAACCTGGTATTTTAGATCATTTTGATGATGCTTTTTGGGTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATTAACCTGGTATTTTAGATCATTTTGATGATGCTTTTTGGGTTC  250

seq1  AAGTGAGTTTAAGATATTTGCTATGACACATCTCAAAATATTCAACAGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGAGTTTAAGATATTTGCTATGACACATCTCAAAATATTCAACAGCA  300

seq1  CAAGCCCAGTACAGGCTCATTTTTTACCCCAGAGAAGAGGATGAAGTTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCCCAGTACAGGCTCATTTTTTACCCCAGAGAAGAGGATGAAGTTGG  350

seq1  TCCTAAGTGAAGAAGTTCACTTTGTTCCACATGATCGTCTAGGGCCCTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAAGTGAAGAAGTTCACTTTGTTCCACATGATCGTCTAGGGCCCTGA  400

seq1  GGTCTTAAAGATTTACTTTGTCATTCACCATGCCCACCACTCCACAATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTAAAGATTTACTTTGTCATTCACCATGCCCACCACTCCACAATAA  450

seq1  ACAGAAATGGGAGCAGATGGTGCACAAATAAATCTCTGAAGGGGCATGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAATGGGAGCAGATGGTGCACAAATAAATCTCTGAAGGGGCATGAG  500

seq1  GCACGAGAAACAGACACAGAAGAGAATGACCACCATAGAGTTGTCTCCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACGAGAAACAGACACAGAAGAGAATGACCACCATAGAGTTGTCTCCAC  550

seq1  CCCCAGCACTGGGGACAGCTTTTGGAGCAAGCTTGACCAGCAGCTCTGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGCACTGGGGACAGCTTTTGGAGCAAGCTTGACCAGCAGCTCTGAT  600

seq1  GGAAGCAAGGTTGGCCTGCTGACTGGATTGTCTCTGTGCCTCCCAAATAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCAAGGTTGGCCTGCTGACTGGATTGTCTCTGTGCCTCCCAAATAG  650

seq1  ACTGCAGGTCTGTCCTGCCTTCTCACATAGGCTGCAGGATTGCTGACCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCAGGTCTGTCCTGCCTTCTCACATAGGCTGCAGGATTGCTGACCCC  700

seq1  TACCACATAAACTGGCAGGATTGTGCCTTCCTACACACTCATACAGATCG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACATAAACTGGCAGGATTGTGCCTTCCTACACACTCATACAGATCG  750

seq1  CTCTGTGCATGCGTGCGTGCGTGCGTGCGTGCTCCTGCACATGTGAGTAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTGCATGCGTGCGTGCGTGCGTGCGTGCTCCTGCACATGTGAGTAG  800

seq1  AGGCCAGAGGTTGATGTTACCATCTTAAATCTTTCTACCTCACTTTTTGA  850
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAGAGGGTGATGTTACCATCTTAAATCTTTCTACCTCACTTTTTGA  850

seq1  GACAAGAGTGGTCTCGTTGACCCTGGAACTCACTCACTGATTCAGAAAGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGAGTGGTCTCGTTGACCCTGGAACTCACTCACTGATTCAGAAAGG  900

seq1  GTGGTTGG-TGAGCAGGC-TTCGGGTGTCCTCCTGCCTCTGTCTCCTCAG  948
      |||||||| ||||||||| |||||||||||||||||||||||||||||||
seq2  GTGGTTGGTTGAGCAGGCTTTCGGGTGTCCTCCTGCCTCTGTCTCCTCAG  950

seq1  CTCTGGGATTATAAGTACCCACTTCTGC-ACCCAGGTTTTTTTTATTAGA  997
      |||||||||||| ||||||||||||||| |||||||||||||||  ||||
seq2  CTCTGGGATTAT-AGTACCCACTTCTGCAACCCAGGTTTTTTTTTATAGA  999

seq1  TATTTTCTTCATTTGCATTTCAAATGATGAACCTAGTTTTTTACAT-GAG  1046
      ||||||| ||| ||||||||| ||||||||||||||| |||||||| |||
seq2  TATTTTC-TCA-TTGCATTTCCAATGATGAACCTAGTCTTTTACATGGAG  1047

seq1  TATTGGGGGTCAGGCTCGAGGAACTTTACAGATGG-AGCCATTTCTCCAG  1095
      ||| ||||||||||||||||  || |||||||||| |||||||||| |||
seq2  TATGGGGGGTCAGGCTCGAG--AC-TTACAGATGGAAGCCATTTCT-CAG  1093

seq1  CCCTCTTTTCCAGTTTTTCTCAGAGA  1121
       |||||||  ||| ||||||||||||
seq2  -CCTCTTT--CAG-TTTTCTCAGAGA  1115