BAC Information

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BAC

Clone NameB6Ng01-321L01
Chromosome1 (Build37)
Map Location 156,153,695 - 156,259,321
singlet/doubletdoublet
Overlap geneCacna1e
Upstream geneLamc1, EG667795, EG626058, 1700012A16Rik, Dhx9, Npl, LOC626096, Rgs8, Rgs16, Rnasel, LOC100043347, Rgsl1, 5830403L16Rik, EG433365, Teddm1, LOC100043357, Glul, LOC100043359
Downstream geneLOC671336, Ier5, Mr1, Stx6, EG667867, BC034090, Xpr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-321L01.bB6Ng01-321L01.g
ACCGA110729GA110730
length1,0741,117
definitionB6Ng01-321L01.b B6Ng01-321L01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(156,153,695 - 156,154,769)(156,258,194 - 156,259,321)
sequence
gaattcttactgaaaactttggagtttctgtttggtttttactagggtta
cttggtaataatgtggtgagatgtgaggtctggatgctcacgtggcagct
tgtggcaacaatcaactgaataaaggattgaaggcaaccatggagccaca
gtccccacctgattctccacgtgtagccacagggacacttcagggaaggg
gattttgtatctgtgttatatagagactgaggagaacacatgcatatagc
aggaggggctctctctgccttcctaaaagattttccatgaagggtctggc
agaagcatttttaaaaagtcagcatttgcaaagggcctgtcagttctggt
tcacaccgatttcctgtgtaaatagcaagcttaagagactcgtgggtagg
acctaccaccagtagactcatcccctgacttactgtccaggaatcttctc
taatgaccttgaaatgcaaattacagttaatataaagcaagagtttggaa
ccctggtaattagcaaacccagttgttgactctgtaaaggaaaaaaaaaa
ctgatgcagagaagaaaattagtttgttcccttcatggttttaaatagtt
cttgcaatgtcttatttttgtttgggcttcttgtgatgcaatgctacaaa
ggggataaaaaataatatttatttaaatcatcatctctcctttatgattt
ttttctttaggccatgtctaattcctacatgttatatacagcaaagcata
gatgttcctcatgtggaatcggagctgggataatcaagctctcattaact
agcacacatttttttttttcctttctgttttgcttccatgtttacttttt
gtgactcagccttcttgtgagaaaactccgatatcagactgcctaagttc
attgctgtttacataaattttgagccagtaataaactcctctggacccat
cttctcaagtttttgcaagaatgattgctgcctcagtggcttgctgtatt
tctcttataaattttaaaataaatattcataattctaacataatgtatac
gttatatgtcgagatttgtctctt
gaattctttgtctccactcagaaaaatgcacccatgttccagcgcatgga
gccctcatcactgcctcaggagatcattgctaatgccaaagccctgcctt
atctccagcaggaccctgtttctggcctgtgagtaaaaaccacatgaagg
gtctgtgggacgcctgtttgcattctgccaccatggttcaggcccgggaa
tcatactctgagccagttccttcctgaggctgactgtctcaaaatggctt
gtcagcaggagtaagagaagaaatgagccaggcatgtgtgatgccgcaac
tggtatcagaggcagtagatgcagcagaaggttggtagcaaaaggtgctg
actcacgttataatgcactaacaccttagctatagttctgttggggagaa
ttagcataatctcaagggtttagttgtcttctcacaatggatctggcagc
atggatgtagagattgctgagcagaagggggaaagagaagcaaccgtcac
tggattctttgcttctggggatgacagttgtagcaatacagtttgcttag
ctctcttgattctgccataccctggagatgtatatattgctatcactact
tttcaaatgaacagacagggactatgactgagaggaggcagcacctaggt
tttcaaatcagtcatttctgattctagaggctttctactatatcttagac
tctggaatgaccaaaaagaccttataaatggaaagaaaaaaaaatcagac
cctgaatggaagaatggtctagtgtttctaaggcttacctactggttgac
tgttagtcagagatggtctctcatagcatacatatcccagtatgtcattg
ttttccagttgtcaccgagcggggagtggaagccaagggacacatgctcc
tcttctcattggaaatgaagttatgtggttgggttttagcagtcttgctt
gagaagtgggaatcactaagatgacattccactatgatcagaaaaggaga
cccagagtttggaatgagcttcattggagcacttactgggaggagtccat
acaattcatttcttttcacacttgtgtattgacttggttcttgcaaacct
tttctgactcatatcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_156153695_156154769
seq2: B6Ng01-321L01.b_46_1119

seq1  GAATTCTTACTGAAAACTTTGGAGTTTCTGTTTGGTTTTTACTAGGGTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTACTGAAAACTTTGGAGTTTCTGTTTGGTTTTTACTAGGGTTA  50

seq1  CTTGGTAATAATGTGGTGAGATGTGAGGTCTGGATGCTCACGTGGCAGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTAATAATGTGGTGAGATGTGAGGTCTGGATGCTCACGTGGCAGCT  100

seq1  TGTGGCAACAATCAACTGAATAAAGGATTGAAGGCAACCATGGAGCCACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCAACAATCAACTGAATAAAGGATTGAAGGCAACCATGGAGCCACA  150

seq1  GTCCCCACCTGATTCTCCACGTGTAGCCACAGGGACACTTCAGGGAAGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCCACCTGATTCTCCACGTGTAGCCACAGGGACACTTCAGGGAAGGG  200

seq1  GATTTTGTATCTGTGTTATATAGAGACTGAGGAGAACACATGCATATAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTGTATCTGTGTTATATAGAGACTGAGGAGAACACATGCATATAGC  250

seq1  AGGAGGGGCTCTCTCTGCCTTCCTAAAAGATTTTCCATGAAGGGTCTGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGGGCTCTCTCTGCCTTCCTAAAAGATTTTCCATGAAGGGTCTGGC  300

seq1  AGAAGCATTTTTAAAAAGTCAGCATTTGCAAAGGGCCTGTCAGTTCTGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCATTTTTAAAAAGTCAGCATTTGCAAAGGGCCTGTCAGTTCTGGT  350

seq1  TCACACCGATTTCCTGTGTAAATAGCAAGCTTAAGAGACTCGTGGGTAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACCGATTTCCTGTGTAAATAGCAAGCTTAAGAGACTCGTGGGTAGG  400

seq1  ACCTACCACCAGTAGACTCATCCCCTGACTTACTGTCCAGGAATCTTCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTACCACCAGTAGACTCATCCCCTGACTTACTGTCCAGGAATCTTCTC  450

seq1  TAATGACCTTGAAATGCAAATTACAGTTAATATAAAGCAAGAGTTTGGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGACCTTGAAATGCAAATTACAGTTAATATAAAGCAAGAGTTTGGAA  500

seq1  CCCTGGTAATTAGCAAACCCAGTTGTTGACTCTGTAAAGGAAAAAAAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGTAATTAGCAAACCCAGTTGTTGACTCTGTAAAGGAAAAAAAAAA  550

seq1  CTGATGCAGAGAAGAAAATTAGTTTGTTCCCTTCATGGTTTTAAATAGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGCAGAGAAGAAAATTAGTTTGTTCCCTTCATGGTTTTAAATAGTT  600

seq1  CTTGCAATGTCTTATTTTTGTTTGGGCTTCTTGTGATGCAATGCTACAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCAATGTCTTATTTTTGTTTGGGCTTCTTGTGATGCAATGCTACAAA  650

seq1  GGGGATAAAAAATAATATTTATTTAAATCATCATCTCTCCTTTATGATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGATAAAAAATAATATTTATTTAAATCATCATCTCTCCTTTATGATTT  700

seq1  TTTTCTTTAGGCCATGTCTAATTCCTACATGTTATATACAGCAAAGCATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTAGGCCATGTCTAATTCCTACATGTTATATACAGCAAAGCATA  750

seq1  GATGTTCCTCATGTGGAATCGGAGCTGGGATAATCAAGCTCTCATTAACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTCCTCATGTGGAATCGGAGCTGGGATAATCAAGCTCTCATTAACT  800

seq1  AGCACACA-TTTTTTTTTTCCTTTCTGTTTTGCTTCCATGTTTACTTTTT  849
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AGCACACATTTTTTTTTTTCCTTTCTGTTTTGCTTCCATGTTTACTTTTT  850

seq1  GTGACTCAGCCTTCTTGTGAGAAAACTCCGATATCAGACTGCCTAAGTTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACTCAGCCTTCTTGTGAGAAAACTCCGATATCAGACTGCCTAAGTTC  900

seq1  ATTGCTGTTTACATAAATTTTGAGCCAGTAATAAACTCCTCTGGACCCAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTGTTTACATAAATTTTGAGCCAGTAATAAACTCCTCTGGACCCAT  950

seq1  CTTCTCAAGTTTTTTGCAAGAATGATTGCTGCCTCAGTGGCTTGCTGTAT  999
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCAAG-TTTTTGCAAGAATGATTGCTGCCTCAGTGGCTTGCTGTAT  999

seq1  TTCTCTTATAAATTTAAAAATACATATTCATAATTCTTACAT-ATGTAAT  1048
      ||||||||||||||| |||||| |||||||||||||| |||| |||| ||
seq2  TTCTCTTATAAATTTTAAAATAAATATTCATAATTCTAACATAATGT-AT  1048

seq1  ACGTAATATGTCGAAGATTTGTCTCTT  1075
      |||| |||||||| |||||||||||||
seq2  ACGTTATATGTCG-AGATTTGTCTCTT  1074

seq1: chr1_156258194_156259321
seq2: B6Ng01-321L01.g_67_1183 (reverse)

seq1  TAGATTATGAAGTCAGAAAAAGATTTGCAAGAACAAAGTTTCATACCACA  50
      |||| |||| |||||| ||||| ||||||||||| ||| |  ||||   |
seq2  TAGA-TATG-AGTCAG-AAAAGGTTTGCAAGAACCAAG-TCAATACACAA  46

seq1  GTGTG-AAAGAAATGAATGGTATGGACTCCTCCCAGT-AGTGCTCCAATG  98
      ||||| |||||||||||| |||||||||||||||||| ||||||||||||
seq2  GTGTGAAAAGAAATGAATTGTATGGACTCCTCCCAGTAAGTGCTCCAATG  96

seq1  GAGGCCTCATTCCCAAACTCTGGGTCTCCCTTTTCTGATCATTAGTGGAA  148
       ||  |||||| ||||||||||||||| ||||||||||||| ||||||||
seq2  AAG--CTCATT-CCAAACTCTGGGTCT-CCTTTTCTGATCA-TAGTGGAA  141

seq1  TTGTCCTTCTTAGTGATTCCCACTTCTCCAAGCAAGACCTGCTTAAACCC  198
       ||| | |||||||||||||||||||| ||||||||| ||||| ||||||
seq2  -TGT-CATCTTAGTGATTCCCACTTCT-CAAGCAAGA-CTGCTAAAACCC  187

seq1  AACCACATAACTTCATTTCCAATGAGAAGAGGAGCATGTGTCCCTTGGCT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACATAACTTCATTTCCAATGAGAAGAGGAGCATGTGTCCCTTGGCT  237

seq1  TCCACTCCCCGCTCGGTGACAACTGGAAAACAATGACATACTGGGATATG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTCCCCGCTCGGTGACAACTGGAAAACAATGACATACTGGGATATG  287

seq1  TATGCTATGAGAGACCATCTCTGACTAACAGTCAACCAGTAGGTAAGCCT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTATGAGAGACCATCTCTGACTAACAGTCAACCAGTAGGTAAGCCT  337

seq1  TAGAAACACTAGACCATTCTTCCATTCAGGGTCTGATTTTTTTTTCTTTC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAACACTAGACCATTCTTCCATTCAGGGTCTGATTTTTTTTTCTTTC  387

seq1  CATTTATAAGGTCTTTTTGGTCATTCCAGAGTCTAAGATATAGTAGAAAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTATAAGGTCTTTTTGGTCATTCCAGAGTCTAAGATATAGTAGAAAG  437

seq1  CCTCTAGAATCAGAAATGACTGATTTGAAAACCTAGGTGCTGCCTCCTCT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTAGAATCAGAAATGACTGATTTGAAAACCTAGGTGCTGCCTCCTCT  487

seq1  CAGTCATAGTCCCTGTCTGTTCATTTGAAAAGTAGTGATAGCAATATATA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCATAGTCCCTGTCTGTTCATTTGAAAAGTAGTGATAGCAATATATA  537

seq1  CATCTCCAGGGTATGGCAGAATCAAGAGAGCTAAGCAAACTGTATTGCTA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCCAGGGTATGGCAGAATCAAGAGAGCTAAGCAAACTGTATTGCTA  587

seq1  CAACTGTCATCCCCAGAAGCAAAGAATCCAGTGACGGTTGCTTCTCTTTC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGTCATCCCCAGAAGCAAAGAATCCAGTGACGGTTGCTTCTCTTTC  637

seq1  CCCCTTCTGCTCAGCAATCTCTACATCCATGCTGCCAGATCCATTGTGAG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTCTGCTCAGCAATCTCTACATCCATGCTGCCAGATCCATTGTGAG  687

seq1  AAGACAACTAAACCCTTGAGATTATGCTAATTCTCCCCAACAGAACTATA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAACTAAACCCTTGAGATTATGCTAATTCTCCCCAACAGAACTATA  737

seq1  GCTAAGGTGTTAGTGCATTATAACGTGAGTCAGCACCTTTTGCTACCAAC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAGGTGTTAGTGCATTATAACGTGAGTCAGCACCTTTTGCTACCAAC  787

seq1  CTTCTGCTGCATCTACTGCCTCTGATACCAGTTGCGGCATCACACATGCC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGCTGCATCTACTGCCTCTGATACCAGTTGCGGCATCACACATGCC  837

seq1  TGGCTCATTTCTTCTCTTACTCCTGCTGACAAGCCATTTTGAGACAGTCA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCATTTCTTCTCTTACTCCTGCTGACAAGCCATTTTGAGACAGTCA  887

seq1  GCCTCAGGAAGGAACTGGCTCAGAGTATGATTCCCGGGCCTGAACCATGG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCAGGAAGGAACTGGCTCAGAGTATGATTCCCGGGCCTGAACCATGG  937

seq1  TGGCAGAATGCAAACAGGCGTCCCACAGACCCTTCATGTGGTTTTTACTC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGAATGCAAACAGGCGTCCCACAGACCCTTCATGTGGTTTTTACTC  987

seq1  ACAGGCCAGAAACAGGGTCCTGCTGGAGATAAGGCAGGGCTTTGGCATTA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCCAGAAACAGGGTCCTGCTGGAGATAAGGCAGGGCTTTGGCATTA  1037

seq1  GCAATGATCTCCTGAGGCAGTGATGAGGGCTCCATGCGCTGGAACATGGG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATGATCTCCTGAGGCAGTGATGAGGGCTCCATGCGCTGGAACATGGG  1087

seq1  TGCATTTTTCTGAGTGGAGACAAAGAATTC  1128
      ||||||||||||||||||||||||||||||
seq2  TGCATTTTTCTGAGTGGAGACAAAGAATTC  1117