BAC Information

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BAC

Clone NameB6Ng01-321M19
Chromosome1 (Build37)
Map Location 188,895,545 - 188,896,699
singlet/doubletsinglet
Overlap geneSpata17
Upstream geneLyplal1, Tgfb2, Rrp15, LOC666832, LOC100042375, D1Pas1
Downstream geneGpatch2, Esrrg, 9330162B11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-321M19.bB6Ng01-321M19.g
ACCGA110813GA110814
length1,1581,197
definitionB6Ng01-321M19.b B6Ng01-321M19.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaactgtgtatgcattgccttgactcagacagatgcaccatacac
taaatgcacatagacaattatttcatacttttgtttttcaaataggaatt
tatcagacgttcccggtgtggtggtgcacacctctaaacacagcactgta
caagcagaaacagaaggactacaaactcaaggtcagcctgagctacatag
aaagactgtgtcaagaataaaagacgaagactttacttcacacggctagg
taacctaatgccaggttttagtgacagtctcacagcacagcccccaccag
gcctgggacttgctgtgtaactttgctctgacgctcttgccaggcctgag
cactaggattactgggctgtgtcgttgtttgactaacaccttgccttgaa
ttgtgattttacagctaactcattaatacggcgtattcttcgtaaacaag
ccgtgcacaaggcaagtcaatgcttacagacacttgggagatgctagctt
gaaaaggacgttcaccactcttgtgccactaggtaaaccattttatatag
taaggcaatctttataaagacataagcatgatggatgcaatataggaata
agatgttaaggtcaaaagccagtgtcctgttgtgtctgcatgagaacaag
cagacatgatctgcagtgctcttagcagctcttaagagccattcggaatg
tggggtgacgtgatttactcagagggctacaaataagtcaaagccttcca
gaagctcttcattttatttaagaaagaaaaggtataagaattattcctca
acgaaaggtcgcatgaagactctgttaaggggcttctgggatggcccagt
tggtaaggcacttaccatgtaagcccatgtggaactttggttccacaacc
aatggaaacagggaaaggagagaacaaactgtacaaagttgtcctctgac
atcttcatgtgttccatgatgcaccggcatgtcatgatttaaaaataaat
aatcaccatcatgatttaaaaaaataaatatttagctattgtgagcatta
cattaaatgctagacaaacgtgagcttagatttcttttatagaaaacatt
tctttagcaaatgcaattcagcattgctatgaagaattgggtgaataata
gctcttac
gaattctcacccgaggaatatctaaaggctgagaaacacctgaaaaaatg
ttcaacatccttaatcatcagagaaatgcaaatcaaaacaaccctgagat
tccatctcacaccagtcagaatgactgagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaagcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatcccgcaatacctctcctgggc
atatatccagaagatgtcccaaccggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gtccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaattcatgaaattcctaggcaa
atggttggacctggagggcatcatcctgagtgaggtaacccaatcacaaa
agaactcaaatgaaatgtactcactgataagtggatattaacccagaaac
ttagtatagcgagatataaggtacaatatgtaaaacatatgaaactgaag
aagaatgaagaccaaagtgtggacactttgctcattcttagaattggaaa
caatcacccatggaaggagttacagagacaaagtttggagctgagacaaa
aggatggtccatctagagactgccatatccagggatccatcccataatta
gcctccaagcgatgacaccattgcatacactagcaagcctttgttgcaag
gacggtgatatagctgtcccttgtgagactaggccggggcctagcaaaca
cagaagtggatgctcacaatcagctattgggatggatcacagggacccca
atggaggagctagagaaagtatccaaggagctaaagagatatgcaaccct
atgggaggaacacattatgactaccagtacccagagctctgactctagct
gcatattgtatcaaaagatgacctagtcgcatcactggaaagaagaagcc
attggtcagcaaacgtatttgcccaagtacaggatgccatgccaaattgg
aaatgggtaaggttagggaagtcgtcgtctacatgtggactaacgag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_188895545_188896699
seq2: B6Ng01-321M19.b_53_1210

seq1  GAATTCAACTGTGTATGCATTGCCTTGACTCAGACAGATGCACCATACAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACTGTGTATGCATTGCCTTGACTCAGACAGATGCACCATACAC  50

seq1  TAAATGCACATAGACAATTATTTCATACTTTTGTTTTTCAAATAGGAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGCACATAGACAATTATTTCATACTTTTGTTTTTCAAATAGGAATT  100

seq1  TATCAGACGTTCCCGGTGTGGTGGTGCACACCTCTAAACACAGCACTGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGACGTTCCCGGTGTGGTGGTGCACACCTCTAAACACAGCACTGTA  150

seq1  CAAGCAGAAACAGAAGGACTACAAACTCAAGGTCAGCCTGAGCTACATAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCAGAAACAGAAGGACTACAAACTCAAGGTCAGCCTGAGCTACATAG  200

seq1  AAAGACTGTGTCAAGAATAAAAGACGAAGACTTTACTTCACACGGCTAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACTGTGTCAAGAATAAAAGACGAAGACTTTACTTCACACGGCTAGG  250

seq1  TAACCTAATGCCAGGTTTTAGTGACAGTCTCACAGCACAGCCCCCACCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCTAATGCCAGGTTTTAGTGACAGTCTCACAGCACAGCCCCCACCAG  300

seq1  GCCTGGGACTTGCTGTGTAACTTTGCTCTGACGCTCTTGCCAGGCCTGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGGACTTGCTGTGTAACTTTGCTCTGACGCTCTTGCCAGGCCTGAG  350

seq1  CACTAGGATTACTGGGCTGTGTCGTTGTTTGACTAACACCTTGCCTTGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAGGATTACTGGGCTGTGTCGTTGTTTGACTAACACCTTGCCTTGAA  400

seq1  TTGTGATTTTACAGCTAACTCATTAATACGGCGTATTCTTCGTAAACAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGATTTTACAGCTAACTCATTAATACGGCGTATTCTTCGTAAACAAG  450

seq1  CCGTGCACAAGGCAAGTCAATGCTTACAGACACTTGGGAGATGCTAGCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTGCACAAGGCAAGTCAATGCTTACAGACACTTGGGAGATGCTAGCTT  500

seq1  GAAAAGGACGTTCACCACTCTTGTGCCACTAGGTAAACCATTTTATATAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGGACGTTCACCACTCTTGTGCCACTAGGTAAACCATTTTATATAG  550

seq1  TAAGGCAATCTTTATAAAGACATAAGCATGATGGATGCAATATAGGAATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGCAATCTTTATAAAGACATAAGCATGATGGATGCAATATAGGAATA  600

seq1  AGATGTTAAGGTCAAAAGCCAGTGTCCTGTTGTGTCTGCATGAGAACAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTTAAGGTCAAAAGCCAGTGTCCTGTTGTGTCTGCATGAGAACAAG  650

seq1  CAGACATGATCTGCAGTGCTCTTAGCAGCTCTTAAGAGCCATTCGGAATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACATGATCTGCAGTGCTCTTAGCAGCTCTTAAGAGCCATTCGGAATG  700

seq1  TGGGGTGACGTGATTTACTCAGAGGGCTACAAATAAGTCAAAGCCTTCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTGACGTGATTTACTCAGAGGGCTACAAATAAGTCAAAGCCTTCCA  750

seq1  GAAGCTCTTCATTTTATTTAAGAAAGAAAAGGTATAAGAATTATTCCTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTCTTCATTTTATTTAAGAAAGAAAAGGTATAAGAATTATTCCTCA  800

seq1  ACGAAAGGTCGCAGGAAGACTCTGTTAAGGGGCTTCTGGGATGGCCCAGT  850
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  ACGAAAGGTCGCATGAAGACTCTGTTAAGGGGCTTCTGGGATGGCCCAGT  850

seq1  TGGTAAGGCACTTACCATGTAAGCCCATGTGGAACTTTGGTTCCACAACC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAAGGCACTTACCATGTAAGCCCATGTGGAACTTTGGTTCCACAACC  900

seq1  AATGGAAACAGGGAAAGGAGAGAACAAACTGTACAAAGTTGTCCTCTGAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAAACAGGGAAAGGAGAGAACAAACTGTACAAAGTTGTCCTCTGAC  950

seq1  ATCTTCATGTGTTCCATGATGCACCGGCATGTCATGATTTAAAAAATAAA  1000
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  ATCTTCATGTGTTCCATGATGCACCGGCATGTCATGATTT-AAAAATAAA  999

seq1  TAATCA-CATCAATGATTT-AAAAAATAAATAATTTAGGCTATTGTGAGC  1048
      |||||| |||| ||||||| ||||||||||| ||||| ||||||||||||
seq2  TAATCACCATC-ATGATTTAAAAAAATAAAT-ATTTA-GCTATTGTGAGC  1046

seq1  ATTACATTAAAATGCTAGACAAACGTGAGCTTAGATTTCTTTTATAG-AA  1097
      |||||||| |||||||||||||||||||||||||||||||||||||| ||
seq2  ATTACATT-AAATGCTAGACAAACGTGAGCTTAGATTTCTTTTATAGAAA  1095

seq1  ACA-TTCTTTAGC-AATGCAATTCAGCA-TGCTAATGAAGAA-TGGGTGA  1143
      ||| ||||||||| |||||||||||||| |||| |||||||| |||||||
seq2  ACATTTCTTTAGCAAATGCAATTCAGCATTGCT-ATGAAGAATTGGGTGA  1144

seq1  --TATAGCTCTTAC  1155
         |||||||||||
seq2  ATAATAGCTCTTAC  1158