BAC Information

Click to search

BAC

Clone NameB6Ng01-322A23
Chromosome1 (Build37)
Map Location 12,389,018 - 12,456,152
singlet/doubletdoublet
Overlap genenone
Upstream geneA830018L16Rik, LOC665262
Downstream geneLOC100039709, LOC621353, LOC100039733, Sulf1, Slco5a1, LOC383490, Prdm14, Ncoa2, LOC665341, LOC100039812
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-322A23.bB6Ng01-322A23.g
ACCGA111004GA111005
length9751,097
definitionB6Ng01-322A23.b B6Ng01-322A23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,455,181 - 12,456,152)(12,389,018 - 12,390,117)
sequence
gaattctgtaaacctgcagtaactagccaatgcatccacaaatgagtaag
tctataaaataccttaaacatggtatatgcaaggacaagcattaacctag
gaaaagagttgagcattagaataaatgaagagatattattcttcaatgat
ataacagaatacacgaatatttcaatatagtccagaataacctatcattc
caaagcagtacaagtaaaacccatcaagaaatcttaaagaaacacaatga
ggaaataagaaaaaatggaaaaaatatgaaaaataatttatatttttata
taaataatttatgacttcaaaactgtggtaaagatgtaatactttaaaca
gtgaggtccatggtacagctcaatggaagaatagtggttgggcaagcaca
gagccccccagtttgactctcagaaatgcaaaaccaaaacaacatggcag
ttacacaaaaataacaaattggtgaaatagcacagagaatttgccaataa
tccttggtatacagtgacttagaatagggttcactcactcagtactaaat
ggagtttccaaagcataatgttatgacaggtaaaagtggtagaaaattac
ctattattcagagctggaaaaataaattacagctgaggtaaagccttgct
gaaatgtgtactcagaatgtgcaagtgtgggtggacttggaggattagga
gacaaatgcaggtttggcttcttaactcagagttctctttccataggaaa
atgcattatagacaaggcagaagtcatcatgttgagtctggacaaggtaa
tccaacaggaggagaagtgtcctgagagcaggcaaaagagtcagagacac
accagctcccagttaggagtctcacaagaacaagtggacagtcacaacat
gtatacatggaggacctgccatctcttgaaggtgtcttctttctgtagag
gaaatgggagggggggagtggagct

gaattccaagataattaaaggtgtgctttaaaatatgttcacaggaacaa
agtaagattattagcagcacagatcctgctacgctggcctgggaaagagt
ttggtggtttatgttagcttacctagatagtgtagggagccctggacagt
gggctgagggtagcaaataacaatatactctaaaatggttataaagattc
ctaatgattgaaattatagggaaatgcagcaatatattagactgtgacaa
ggaagttcaaacacagatacaaactcaatttagcacacacacacatatcc
acacacacatgacatagacaattattaaatttcaattcaaattgaattaa
atgtattatatataatatatatataataaccaagttttcatagcaattgt
taaacagtagctgtttctgaatggcaaggtcacagttggattttggtttt
atttgttttttcatttgtataacatattaaacatggctggcacaaattca
ttagcatacaatgattctggaagcaagtcatcacacagttctcagcgtgt
caaatggggaaagagatgcatcgttgaattgctgtgaggagtgagtaaga
ctaatttcatgttgacatgataattattctctagtattctagggagactg
cagaaggcaaagtaggaaaggaactaatttagagattataatgagccatt
gaataaaggcattggagatatacttagaaatctgttaacaggggagaagg
tggtagatgggttggcagaaccgtctgagtggttctcaggatgatgctat
catagattcctgagaatcacataaccttttggtccattagtatgggtacc
tgtgagctcagtgatgtgcccagggtcagagctgtcatcacccctctggc
cagtgaagtccactcatccattatgtatttcacatcagttcattgaaaag
tacagcatccagccagttctctactgatctctcagttccagtatttctat
ctctaactctacattttcactgtgtctcaactcttgagctagctgtactt
ttatgtacctccactcactgtatttcttaaataagaactacctgctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_12455181_12456152
seq2: B6Ng01-322A23.b_43_1017 (reverse)

seq1  AGCTCCACTCCCCC---TCCATTTCCTCTACAGAAAGAAGACACCTTCAA  47
      ||||||||||||||    ||||||||||||||||||||||||||||||||
seq2  AGCTCCACTCCCCCCCTCCCATTTCCTCTACAGAAAGAAGACACCTTCAA  50

seq1  GAGATGGCAGGTCCTCCATGTATACATGTTGTGACTGTCCACTTGTTCTT  97
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGGCAGGTCCTCCATGTATACATGTTGTGACTGTCCACTTGTTCTT  100

seq1  GTGAGACTCCTAACTGGGAGCTGGTGTGTCTCTGACTCTTTTGCCTGCTC  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGACTCCTAACTGGGAGCTGGTGTGTCTCTGACTCTTTTGCCTGCTC  150

seq1  TCAGGACACTTCTCCTCCTGTTGGATTACCTTGTCCAGACTCAACATGAT  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGACACTTCTCCTCCTGTTGGATTACCTTGTCCAGACTCAACATGAT  200

seq1  GACTTCTGCCTTGTCTATAATGCATTTTCCTATGGAAAGAGAACTCTGAG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCTGCCTTGTCTATAATGCATTTTCCTATGGAAAGAGAACTCTGAG  250

seq1  TTAAGAAGCCAAACCTGCATTTGTCTCCTAATCCTCCAAGTCCACCCACA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAAGCCAAACCTGCATTTGTCTCCTAATCCTCCAAGTCCACCCACA  300

seq1  CTTGCACATTCTGAGTACACATTTCAGCAAGGCTTTACCTCAGCTGTAAT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCACATTCTGAGTACACATTTCAGCAAGGCTTTACCTCAGCTGTAAT  350

seq1  TTATTTTTCCAGCTCTGAATAATAGGTAATTTTCTACCACTTTTACCTGT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTTCCAGCTCTGAATAATAGGTAATTTTCTACCACTTTTACCTGT  400

seq1  CATAACATTATGCTTTGGAAACTCCATTTAGTACTGAGTGAGTGAACCCT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAACATTATGCTTTGGAAACTCCATTTAGTACTGAGTGAGTGAACCCT  450

seq1  ATTCTAAGTCACTGTATACCAAGGATTATTGGCAAATTCTCTGTGCTATT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTAAGTCACTGTATACCAAGGATTATTGGCAAATTCTCTGTGCTATT  500

seq1  TCACCAATTTGTTATTTTTGTGTAACTGCCATGTTGTTTTGGTTTTGCAT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCAATTTGTTATTTTTGTGTAACTGCCATGTTGTTTTGGTTTTGCAT  550

seq1  TTCTGAGAGTCAAACTGGGGGGCTCTGTGCTTGCCCAACCACTATTCTTC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAGAGTCAAACTGGGGGGCTCTGTGCTTGCCCAACCACTATTCTTC  600

seq1  CATTGAGCTGTACCATGGACCTCACTGTTTAAAGTATTACATCTTTACCA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGAGCTGTACCATGGACCTCACTGTTTAAAGTATTACATCTTTACCA  650

seq1  CAGTTTTGAAGTCATAAATTATTTATATAAAAATATAAATTATTTTTCAT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTTGAAGTCATAAATTATTTATATAAAAATATAAATTATTTTTCAT  700

seq1  ATTTTTTCCATTTTTTCTTATTTCCTCATTGTGTTTCTTTAAGATTTCTT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTCCATTTTTTCTTATTTCCTCATTGTGTTTCTTTAAGATTTCTT  750

seq1  GATGGGTTTTACTTGTACTGCTTTGGAATGATAGGTTATTCTGGACTATA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGGTTTTACTTGTACTGCTTTGGAATGATAGGTTATTCTGGACTATA  800

seq1  TTGAAATATTCGTGTATTCTGTTATATCATTGAAGAATAATATCTCTTCA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAATATTCGTGTATTCTGTTATATCATTGAAGAATAATATCTCTTCA  850

seq1  TTTATTCTAATGCTCAACTCTTTTCCTAGGTTAATGCTTGTCCTTGCATA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTCTAATGCTCAACTCTTTTCCTAGGTTAATGCTTGTCCTTGCATA  900

seq1  TACCATGTTTAAGGTATTTTATAGACTTACTCATTTGTGGATGCATTGGC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATGTTTAAGGTATTTTATAGACTTACTCATTTGTGGATGCATTGGC  950

seq1  TAGTTACTGCAGGTTTACAGAATTC  972
      |||||||||||||||||||||||||
seq2  TAGTTACTGCAGGTTTACAGAATTC  975


seq1: chr1_12389018_12390117
seq2: B6Ng01-322A23.g_65_1161

seq1  GAATTCCAAGATAATTAAAGGTGTGCTTTAAAATATGTTCACAGGAACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGATAATTAAAGGTGTGCTTTAAAATATGTTCACAGGAACAA  50

seq1  AGTAAGATTATTAGCAGCACAGATCCTGCTACGCTGGCCTGGGAAAGAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGATTATTAGCAGCACAGATCCTGCTACGCTGGCCTGGGAAAGAGT  100

seq1  TTGGTGGTTTATGTTAGCTTACCTAGATAGTGTAGGGAGCCCTGGACAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGGTTTATGTTAGCTTACCTAGATAGTGTAGGGAGCCCTGGACAGT  150

seq1  GGGCTGAGGGTAGCAAATAACAATATACTCTAAAATGGTTATAAAGATTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGAGGGTAGCAAATAACAATATACTCTAAAATGGTTATAAAGATTC  200

seq1  CTAATGATTGAAATTATAGGGAAATGCAGCAATATATTAGACTGTGACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATGATTGAAATTATAGGGAAATGCAGCAATATATTAGACTGTGACAA  250

seq1  GGAAGTTCAAACACAGATACAAACTCAATTTAGCACACACACACATATCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTTCAAACACAGATACAAACTCAATTTAGCACACACACACATATCC  300

seq1  ACACACACATGACATAGACAATTATTAAATTTCAATTCAAATTGAATTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACATGACATAGACAATTATTAAATTTCAATTCAAATTGAATTAA  350

seq1  ATGTATTATATATAATATATATATAATAACCAAGTTTTCATAGCAATTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATTATATATAATATATATATAATAACCAAGTTTTCATAGCAATTGT  400

seq1  TAAACAGTAGCTGTTTCTGAATGGCAAGGTCACAGTTGGATTTTGGTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAGTAGCTGTTTCTGAATGGCAAGGTCACAGTTGGATTTTGGTTTT  450

seq1  ATTTGTTTTTTCATTTGTATAACATATTAAACATGGCTGGCACAAATTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTTTTTTCATTTGTATAACATATTAAACATGGCTGGCACAAATTCA  500

seq1  TTAGCATACAATGATTCTGGAAGCAAGTCATCACACAGTTCTCAGCGTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCATACAATGATTCTGGAAGCAAGTCATCACACAGTTCTCAGCGTGT  550

seq1  CAAATGGGGAAAGAGATGCATCGTTGAATTGCTGTGAGGAGTGAGTAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGGGGAAAGAGATGCATCGTTGAATTGCTGTGAGGAGTGAGTAAGA  600

seq1  CTAATTTCATGTTGACATGATAATTATTCTCTAGTATTCTAGGGAGACTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTTCATGTTGACATGATAATTATTCTCTAGTATTCTAGGGAGACTG  650

seq1  CAGAAGGCAAAGTAGGAAAGGAACTAATTTAGAGATTATAATGAGCCATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGGCAAAGTAGGAAAGGAACTAATTTAGAGATTATAATGAGCCATT  700

seq1  GAATAAAGGCATTGGAGATATACTTAGAAATCTGTTAACAGGGGAGAAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAAGGCATTGGAGATATACTTAGAAATCTGTTAACAGGGGAGAAGG  750

seq1  TGGTAGATGGGTTGGCAGAACCGTCTGAGTGGTTCTCAGGATGATGCTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGATGGGTTGGCAGAACCGTCTGAGTGGTTCTCAGGATGATGCTAT  800

seq1  CATAGATTCCTGAGAATCACATAACCTTTTGGTCCATTAGTATGGGTACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGATTCCTGAGAATCACATAACCTTTTGGTCCATTAGTATGGGTACC  850

seq1  TGTGAGCTCAGTGATGTGCCCAGGGTCAGAGCTGTCATCACCCCTCTGGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGCTCAGTGATGTGCCCAGGGTCAGAGCTGTCATCACCCCTCTGGC  900

seq1  CAGTGAAGTCCACTCATCCATTATGTATTTCACATCAGGTTCATTGAAAA  950
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CAGTGAAGTCCACTCATCCATTATGTATTTCACATCA-GTTCATTGAAAA  949

seq1  GTACAGCATCCAGCCAGTTCTCTACTGATCTCTCAGTCCCAGTATTTCTT  1000
      ||||||||||||||||||||||||||||||||||||| ||||||||||| 
seq2  GTACAGCATCCAGCCAGTTCTCTACTGATCTCTCAGTTCCAGTATTTCT-  998

seq1  ATTCTCTAACTCTACATTTTCACTGTGTCTTCAACTC-TGAGCTAGCTGT  1049
        ||||||||||||||||||||||||||| ||||||| ||||||||||||
seq2  -ATCTCTAACTCTACATTTTCACTGTGTC-TCAACTCTTGAGCTAGCTGT  1046

seq1  ACTTTTATGTACCT-CACTCAACTGTA-TTCTTAAATAAGGACATACCTG  1097
      |||||||||||||| ||||| |||||| |||||||||||| || ||||||
seq2  ACTTTTATGTACCTCCACTC-ACTGTATTTCTTAAATAAGAAC-TACCTG  1094

seq1  CTC  1100
      |||
seq2  CTC  1097


| Home | SequenceCutter | Blast | Download |