BAC Information

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BAC

Clone NameB6Ng01-322B18
Chromosome1 (Build37)
Map Location 175,969,350 - 176,111,036
singlet/doubletdoublet
Overlap geneOlfr433, Olfr432, GA_x5J8B7W3B3M-30314-31216, Olfr430, Olfr429, Olfr426, Olfr1528-ps1, Olfr244, Olfr424, Olfr423-ps1, Olfr421, Olfr422-ps1, Olfr420, Spna1
Upstream geneGA_x5J8B7W5Q1F-395172-396104, Olfr1408, GA_x5J8B7W5Q1F-344462-343889, Olfr1406, Olfr218, Olfr1405-ps1, Olfr1404, Fcer1a, Olfr1403, Darc, Cadm3, Aim2, EG240921, BC094916, LOC623121, AI447904, E430029J22Rik, LOC665972, AI607873, Ifi204, EG666028, LOC100040462, Mnda, Ifi203, Ifi202b, Ifi205
Downstream geneOlfr419, 1810030J14Rik, Olfr417, GA_x5J8B7W3B3M-312879-313274, GA_x5J8B7W3B3M-318013-318414, Olfr415, Olfr414, Olfr220, Fmn2, Grem2, Rgs7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-322B18.bB6Ng01-322B18.g
ACCGA111040GA111041
length1,2171,156
definitionB6Ng01-322B18.b B6Ng01-322B18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(176,109,849 - 176,111,036)(175,969,350 - 175,970,511)
sequence
gaattctcaaacaatagcaaatgacataaagcctttcctgtcttcacaag
gctacaaataagagggaagttgtcttattccatttggccaaactaagcca
ccaaataactgcagctatgtagaaaaccaggtgacatcagaacagcccag
ccaagcatctccatagctgaatcagagccatgcacaaaactatatttatt
ctaagttttgtggtagttgtatttttagaaagtttaaatagatgagcgcc
ttttagtacaataaaaatgtggtaaagacaaaaaaatgtaggaactgttg
aacaaacagctttgaaaatgttggcaaacagtgatatctttagtctttct
ctagtttccatttatcctgaatctttgctgctactatcatggctgttaac
agattcactatagagctgagagcacaataaagcctaaataggatgcgcaa
taaaggtacctgttagactttatgtttttcatgtatatatactatattag
actatattacacatacatgtatctattcatgaatattatataattctgat
tgcaaatacatatatacactgttccaattttctcttgcatattagggtat
ttagtcccagtaaatccttgttaattcagacattgaaaacttatgtaagc
actgctttaagtaaatgatagtgtttctatttttctcttactctcttata
aaatgtttatataataatagtatatataatatatacatgtatatatatgc
acatagatatatattgatagtcaaacattatcataagttttatactactt
tattcctgtttcttccatgaggagtgcttaaaaggagccagcaataaaat
ttatggtacagaaattgtctatgctacttgtggatttaattttctctgtc
tatctctcttttaaacacacacacacacacacacacacacacacacacac
acacacacacacacacacacacatacacacacacacacacagagagagag
agtgaagagatccttttggtgtccccctcacctgggcacaactcattagc
aatattggtttcacttctgttccactttttcccttcccgaagcggatcag
tttctttccctggaattcttccaaaccttccttatgcaaggaacctctca
ggtcgcctcccagtccattcgcccccagctccactaatgtcactatagct
tcctgtatatgggtggg
gaattcatctgttaaagtatttgatacatgtaaaacacatggggagtaag
tgtctatgtgaggaagacactacttgaactttttacatataaattccata
atggaggttcttgtttggcttttatatatttcacattcatcatgtgcagg
tcagtcaaactggtaataattcaactcagcccttgcctttgtaccaacat
gtacagtgacaccctggagaattctgtcattcttcttgcctatgtgaaat
gggtaccataactcagttttctccttactttttgtcttcctaatggcagt
tagttcaaccatctatattgagcagtagtttggaggagaacagaatatta
cccaagcagcacactacttggtaacgcctaaaagaagtgctgactctctc
ctagagtaaattaattcatctctaggctctatacttgatgatgacaccaa
aagacctaaagacgttttatggagtgttcagtagtcacccaacaatgcaa
gcaaataaatgctcattgttgattactagagcagcacacagtgtcatcat
gtgaaagtgaatttttaaggtgagcacaattgttccagtagataatataa
ctctatcctttataataaagtaagccacagggcatataacatgagtgagt
gcttctccaactttaaaacctagtttccccctttctgtgctttgaaaccc
accatattcatcaaaataaattttaattgtgtttttacaacttgtaagca
aactaatgtaagtgtatttacacattctggattttttttttcatatcatt
tctggaagtgtgttctcatttttatagatgagatccatgaaatctcctgg
gtttgtttgtttgtttgtttttgttttttaagcagtcttttgctacagag
ctcttgagttgctaactgggctgccttgtctgggcctcagttggagaggt
tgtgccttgtcctgcaagatttgatgtgccatggttgagagctacagcaa
gagataggagtaagcactgtccgaggggggaccagaagtggggacagtga
ttccggatgtaatgctatagtatagtatgatatatactgatcattcaata
atcattagtagtatagtattatactactaacgagattcaggaaccaaggg
ggagat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_176109849_176111036
seq2: B6Ng01-322B18.b_46_1262 (reverse)

seq1  CCCA-CCAT-TACAGGAAGCTATAGTGACATTAGTGGAGCT--GGGCGA-  45
      |||| |||| |||||||||||||||||||||||||||||||  |||||| 
seq2  CCCACCCATATACAGGAAGCTATAGTGACATTAGTGGAGCTGGGGGCGAA  50

seq1  -TGACTGGGA-GCGAACT--GAGGT--CCTGCATAA-GAAG--TTTGAAG  86
        |||||||| |||| ||  |||||  | ||||||| ||||  || ||||
seq2  TGGACTGGGAGGCGACCTGAGAGGTTCCTTGCATAAGGAAGGTTTGGAAG  100

seq1  AATTCCAGG--AAG-AACTGA-CCGCT--CGGAAGGG-AAAAGTGG-ACA  128
      |||||||||  ||| |||||| |||||   ||||||| |||||||| |||
seq2  AATTCCAGGGAAAGAAACTGATCCGCTTCGGGAAGGGAAAAAGTGGAACA  150

seq1  G-AGTG-AACCAATA-TGCTAATGAG-TGTGCCCAGGTGAGGGGGACAC-  173
      | |||| |||||||| |||||||||| |||||||||||||||||||||| 
seq2  GAAGTGAAACCAATATTGCTAATGAGTTGTGCCCAGGTGAGGGGGACACC  200

seq1  -AAAGGATCTC-TCACTCTCTCTCTCTGTGTGTGTGTGTGTGTATGTGTG  221
       |||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGATCTCTTCACTCTCTCTCTCTGTGTGTGTGTGTGTGTATGTGTG  250

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  271
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  300

seq1  TGTTTAAAAAGAGAGATAGACAGAGAAAATTAAATCCACAAGTAGCATAG  321
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTT-AAAAGAGAGATAGACAGAGAAAATTAAATCCACAAGTAGCATAG  349

seq1  ACAATTTCTGTACCATAAATTTTATTGCTGGCTCCTTTTAAGCACTCCTC  371
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTTCTGTACCATAAATTTTATTGCTGGCTCCTTTTAAGCACTCCTC  399

seq1  ATGGAAGAAACAGGAATAAAGTAGTATAAAACTTATGATAATGTTTGACT  421
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAGAAACAGGAATAAAGTAGTATAAAACTTATGATAATGTTTGACT  449

seq1  ATCAATATATATCTATGTGCATATATATACATGTATATATTATATATACT  471
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATATATATCTATGTGCATATATATACATGTATATATTATATATACT  499

seq1  ATTATTATAT-AACATTTTATAAGAGAGTAAGAGAAAAATAGAAACACTA  520
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  ATTATTATATAAACATTTTATAAGAGAGTAAGAGAAAAATAGAAACACTA  549

seq1  TCATTTACTTAAAGCAGTGCTTACATAAGTTTTCAATGTCTGAATTAACA  570
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTACTTAAAGCAGTGCTTACATAAGTTTTCAATGTCTGAATTAACA  599

seq1  AGGATTTACTGGGACTAAATACCCTAATATGCAAGAGAAAATTGGAACAG  620
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTTACTGGGACTAAATACCCTAATATGCAAGAGAAAATTGGAACAG  649

seq1  TGTATATATGTATTTGCAATCAGAATTATATAATATTCATGAATAGATAC  670
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATATATGTATTTGCAATCAGAATTATATAATATTCATGAATAGATAC  699

seq1  ATGTATGTGTAATATAGTCTAATATAGTATATATACATGAAAAACATAAA  720
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATGTGTAATATAGTCTAATATAGTATATATACATGAAAAACATAAA  749

seq1  GTCTAACAGGTACCTTTATTGCGCATCCTATTTAGGCTTTATTGTGCTCT  770
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAACAGGTACCTTTATTGCGCATCCTATTTAGGCTTTATTGTGCTCT  799

seq1  CAGCTCTATAGTGAATCTGTTAACAGCCATGATAGTAGCAGCAAAGATTC  820
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCTATAGTGAATCTGTTAACAGCCATGATAGTAGCAGCAAAGATTC  849

seq1  AGGATAAATGGAAACTAGAGAAAGACTAAAGATATCACTGTTTGCCAACA  870
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATAAATGGAAACTAGAGAAAGACTAAAGATATCACTGTTTGCCAACA  899

seq1  TTTTCAAAGCTGTTTGTTCAACAGTTCCTACATTTTTTTGTCTTTACCAC  920
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAAAGCTGTTTGTTCAACAGTTCCTACATTTTTTTGTCTTTACCAC  949

seq1  ATTTTTATTGTACTAAAAGGCGCTCATCTATTTAAACTTTCTAAAAATAC  970
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTATTGTACTAAAAGGCGCTCATCTATTTAAACTTTCTAAAAATAC  999

seq1  AACTACCACAAAACTTAGAATAAATATAGTTTTGTGCATGGCTCTGATTC  1020
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTACCACAAAACTTAGAATAAATATAGTTTTGTGCATGGCTCTGATTC  1049

seq1  AGCTATGGAGATGCTTGGCTGGGCTGTTCTGATGTCACCTGGTTTTCTAC  1070
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATGGAGATGCTTGGCTGGGCTGTTCTGATGTCACCTGGTTTTCTAC  1099

seq1  ATAGCTGCAGTTATTTGGTGGCTTAGTTTGGCCAAATGGAATAAGACAAC  1120
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTGCAGTTATTTGGTGGCTTAGTTTGGCCAAATGGAATAAGACAAC  1149

seq1  TTCCCTCTTATTTGTAGCCTTGTGAAGACAGGAAAGGCTTTATGTCATTT  1170
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTCTTATTTGTAGCCTTGTGAAGACAGGAAAGGCTTTATGTCATTT  1199

seq1  GCTATTGTTTGAGAATTC  1188
      ||||||||||||||||||
seq2  GCTATTGTTTGAGAATTC  1217

seq1: chr1_175969350_175970511
seq2: B6Ng01-322B18.g_66_1221

seq1  GAATTCATCTGTTAAAGTATTTGATACATGTAAAACACATGGGGAGTAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCTGTTAAAGTATTTGATACATGTAAAACACATGGGGAGTAAG  50

seq1  TGTCTATGTGAGGAAGACACTACTTGAACTTTTTACATATAAATTCCATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTATGTGAGGAAGACACTACTTGAACTTTTTACATATAAATTCCATA  100

seq1  ATGGAGGTTCTTGTTTGGCTTTTATATATTTCACATTCATCATGTGCAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGGTTCTTGTTTGGCTTTTATATATTTCACATTCATCATGTGCAGG  150

seq1  TCAGTCAAACTGGTAATAATTCAACTCAGCCCTTGCCTTTGTACCAACAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCAAACTGGTAATAATTCAACTCAGCCCTTGCCTTTGTACCAACAT  200

seq1  GTACAGTGACACCCTGGAGAATTCTGTCATTCTTCTTGCCTATGTGAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGTGACACCCTGGAGAATTCTGTCATTCTTCTTGCCTATGTGAAAT  250

seq1  GGGTACCATAACTCAGTTTTCTCCTTACTTTTTGTCTTCCTAATGGCAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTACCATAACTCAGTTTTCTCCTTACTTTTTGTCTTCCTAATGGCAGT  300

seq1  TAGTTCAACCATCTATATTGAGCAGTAGTTTGGAGGAGAACAGAATATTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTCAACCATCTATATTGAGCAGTAGTTTGGAGGAGAACAGAATATTA  350

seq1  CCCAAGCAGCACACTACTTGGTAACGCCTAAAAGAAGTGCTGACTCTCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGCAGCACACTACTTGGTAACGCCTAAAAGAAGTGCTGACTCTCTC  400

seq1  CTAGAGTAAATTAATTCATCTCTAGGCTCTATACTTGATGATGACACCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGTAAATTAATTCATCTCTAGGCTCTATACTTGATGATGACACCAA  450

seq1  AAGACCTAAAGACGTTTTATGGAGTGTTCAGTAGTCACCCAACAATGCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCTAAAGACGTTTTATGGAGTGTTCAGTAGTCACCCAACAATGCAA  500

seq1  GCAAATAAATGCTCATTGTTGATTACTAGAGCAGCACACAGTGTCATCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATAAATGCTCATTGTTGATTACTAGAGCAGCACACAGTGTCATCAT  550

seq1  GTGAAAGTGAATTTTTAAGGTGAGCACAATTGTTCCAGTAGATAATATAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAAGTGAATTTTTAAGGTGAGCACAATTGTTCCAGTAGATAATATAA  600

seq1  CTCTATCCTTTATAATAAAGTAAGCCACAGGGCATATAACATGAGTGAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATCCTTTATAATAAAGTAAGCCACAGGGCATATAACATGAGTGAGT  650

seq1  GCTTCTCCAACTTTAAAACCTAGTTTCCCCCTTTCTGTGCTTTGAAACCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTCCAACTTTAAAACCTAGTTTCCCCCTTTCTGTGCTTTGAAACCC  700

seq1  ACCATATTCATCAAAATAAATTTTAATTGTGTTTTTACAACTTGTAAGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATATTCATCAAAATAAATTTTAATTGTGTTTTTACAACTTGTAAGCA  750

seq1  AACTAATGTAAGTGTATTTACACATTCTGGA-TTTTTTTTTCATATCATT  799
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AACTAATGTAAGTGTATTTACACATTCTGGATTTTTTTTTTCATATCATT  800

seq1  TCTGGAAGTGTGTTCTCATTTTTATAGATGAGATCCATGAAATCTCCTGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAAGTGTGTTCTCATTTTTATAGATGAGATCCATGAAATCTCCTGG  850

seq1  GTTTGTTTGTTTGTTTGTTTTTGTTTTTTAAGCAGTCTTTTGCTACAGAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTTGTTTGTTTGTTTTTGTTTTTTAAGCAGTCTTTTGCTACAGAG  900

seq1  CTCTTGAGTTGCTAACTGGGCTGCCTTGTCT-GGCCTCAGTTGGAGAGGT  948
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CTCTTGAGTTGCTAACTGGGCTGCCTTGTCTGGGCCTCAGTTGGAGAGGT  950

seq1  TGTGCCTTGTCCTGCAAGATTTGATGTGCCAGGGTTGAGAGGCTACAGCA  998
      ||||||||||||||||||||||||||||||| |||||||| |||||||||
seq2  TGTGCCTTGTCCTGCAAGATTTGATGTGCCATGGTTGAGA-GCTACAGCA  999

seq1  GGAGATAGGAGTAAGCACTGTCCGAGGGGGGACCAGAAGTGGGGACAGTG  1048
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATAGGAGTAAGCACTGTCCGAGGGGGGACCAGAAGTGGGGACAGTG  1049

seq1  ATT-CGGATGTAATGTTAATAGTAATAATAATAATAATAATAATAATAAT  1097
      ||| ||||||||||| | ||||| ||| | || |||   ||| | || ||
seq2  ATTCCGGATGTAATGCT-ATAGT-ATAGT-ATGATA--TATACTGATCAT  1094

seq1  ATAATAATAATAATTATTATTATTATTATTATTATTATAGAGATAAAGGA  1147
        |||||| || | || || || ||||| || || ||  |||||  ||||
seq2  TCAATAATCATTAGTAGTA-TAGTATTA-TACTACTAACGAGATTCAGGA  1142

seq1  ACCAAAGGGGGAGAT  1162
      ||| |||||||||||
seq2  ACC-AAGGGGGAGAT  1156