BAC Information

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BAC

Clone NameB6Ng01-322F23
Chromosome1 (Build37)
Map Location 23,504,354 - 23,656,990
singlet/doubletdoublet
Overlap genenone
Upstream geneRims1, EG665725, LOC665731, 4933415F23Rik, Rn4.5s-ps4, EG623356, Ogfrl1, LOC665782
Downstream geneB3gat2, Smap1, 1110058L19Rik, 4921533L14Rik, LOC665808, Col9a1, Col19a1, LOC100040475, LOC665829
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-322F23.bB6Ng01-322F23.g
ACCGA111229GA111230
length1,122417
definitionB6Ng01-322F23.b B6Ng01-322F23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(23,504,354 - 23,505,479)(23,656,568 - 23,656,990)
sequence
gaattctcacaccctaattgttagggccagtagttttcctttaagcacta
acttagttgaatccaacaagttttaagggaagacttttcatttcatttga
ttctaaatatttcctgacttgttgtaagtcatttagaaatatggcttttt
gtttgtttgtttgtatttttggtttttcgagacagggtttctctgtgtag
ccctggttatccaggaactcaatttgtagaccaggctagcctcgaactca
gaaatccatctgcctctgcctcctgagtgctgggattaaaggcgtgtgcc
acctttcttcattttttgaatacatagtctttccctggtttttattgaat
tctaactattgctagaaaatagaaattatgataccaatgttttcagcttt
tgcattttgcttcacagtcagtttgtatctgtgtaaatattctatgggcc
ctttaaagaaataaattgtatattttcttgttgatggatattgtattctt
cttagggctattggctcaagcttgttcactgtggtgttgaattgttttat
atactcactgagcctcttattttcattttaaaaactcttaagaaattcac
agaaggaactggggagatggctcagcaattacaagccttgggacctggat
ttgattcccccagcacccacagaaggactcctaaccatctgtaactccaa
taccaggaaatctgactccttcttctggcttctatgggcactgattacag
atgatgcacaaacatacatgtagacaaataaatattaaaataaataatat
aataagaataacaaaaagatccacaggagacccacaacaatgattgtttt
gaagaagagacccaggtgaccatggaagagtgctgagttctgtattgtat
atctagtggtattgcttccccatgtctggactcttgcctctgggaaatga
caaagaactccccacactatgtcccttacctcagctttacttctggacag
agccacatcacactctccattcttatagccctttggtaaaaggacttacc
tttagactgaactgaagtgcattttccctcgagagaaatatagaaggaac
tcaaatctttgccacatctctt

tgtgattctccctttagcacttccggattcccacaaatgctctttcctcc
ttcctttgttcttcccctgagttggaatattcactgggctgaagcttcct
ctgtgtgtaaaggcagctcacatgctatagttgaatgtgatgccagaccc
gagattggaagtagacatcgctgctcagtgcctccagaatccacacagtt
tctttgtgttcattcaagaagaaatgctgctccttgctgaagagatggca
gctcaggggtggggaggataataggtgttctgttttagggctcttctcta
gcctgctggtgaagctgactgtgatggggttgaagtttctcgagagactg
aggacttcctctcactcagacacattccctaggagagaagatagatggtt
gttcgtggggaggaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_23504354_23505479
seq2: B6Ng01-322F23.b_46_1167

seq1  GAATTCTCACACCCTAATTGTTAGGGCCAGTAGTTTTCCTTTAAGCACTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCACACCCTAATTGTTAGGGCCAGTAGTTTTCCTTTAAGCACTA  50

seq1  ACTTAGTTGAATCCAACAAGTTTTAAGGGAAGACTTTTCATTTCATTTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGTTGAATCCAACAAGTTTTAAGGGAAGACTTTTCATTTCATTTGA  100

seq1  TTCTAAATATTTCCTGACTTGTTGTAAGTCATTTAGAAATATGGCTTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAATATTTCCTGACTTGTTGTAAGTCATTTAGAAATATGGCTTTTT  150

seq1  GTTTGTTTGTTTGTATTTTTGGTTTTTCGAGACAGGGTTTCTCTGTGTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTTGTTTGTATTTTTGGTTTTTCGAGACAGGGTTTCTCTGTGTAG  200

seq1  CCCTGGTTATCCAGGAACTCAATTTGTAGACCAGGCTAGCCTCGAACTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGTTATCCAGGAACTCAATTTGTAGACCAGGCTAGCCTCGAACTCA  250

seq1  GAAATCCATCTGCCTCTGCCTCCTGAGTGCTGGGATTAAAGGCGTGTGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCCATCTGCCTCTGCCTCCTGAGTGCTGGGATTAAAGGCGTGTGCC  300

seq1  ACCTTTCTTCATTTTTTGAATACATAGTCTTTCCCTGGTTTTTATTGAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTCTTCATTTTTTGAATACATAGTCTTTCCCTGGTTTTTATTGAAT  350

seq1  TCTAACTATTGCTAGAAAATAGAAATTATGATACCAATGTTTTCAGCTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAACTATTGCTAGAAAATAGAAATTATGATACCAATGTTTTCAGCTTT  400

seq1  TGCATTTTGCTTCACAGTCAGTTTGTATCTGTGTAAATATTCTATGGGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTTTGCTTCACAGTCAGTTTGTATCTGTGTAAATATTCTATGGGCC  450

seq1  CTTTAAAGAAATAAATTGTATATTTTCTTGTTGATGGATATTGTATTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAAGAAATAAATTGTATATTTTCTTGTTGATGGATATTGTATTCTT  500

seq1  CTTAGGGCTATTGGCTCAAGCTTGTTCACTGTGGTGTTGAATTGTTTTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGGGCTATTGGCTCAAGCTTGTTCACTGTGGTGTTGAATTGTTTTAT  550

seq1  ATACTCACTGAGCCTCTTATTTTCATTTTAAAAACTCTTAAGAAATTCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTCACTGAGCCTCTTATTTTCATTTTAAAAACTCTTAAGAAATTCAC  600

seq1  AGAAGGAACTGGGGAGATGGCTCAGCAATTACAAGCCTTGGGACCTGGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGAACTGGGGAGATGGCTCAGCAATTACAAGCCTTGGGACCTGGAT  650

seq1  TTGATTCCCCCAGCACCCACAGAAGGACTCCTAACCATCTGTAACTCCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTCCCCCAGCACCCACAGAAGGACTCCTAACCATCTGTAACTCCAA  700

seq1  TACCAGGAAATCTGACTCCTTCTTCTGGCTTCTATGGGCACTGATTACAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAGGAAATCTGACTCCTTCTTCTGGCTTCTATGGGCACTGATTACAG  750

seq1  ATGATGCACAAACATACATGTAGACAAATAAATATTAAAATAAATAATAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGCACAAACATACATGTAGACAAATAAATATTAAAATAAATAATAT  800

seq1  AATAAGAATAACAAAAAGATCCACAGGAGACCCACAACAATGATTGTTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGAATAACAAAAAGATCCACAGGAGACCCACAACAATGATTGTTTT  850

seq1  GAAGAAGAGACCCAGGTGACCATGGAAGAGTGCTGAGTTCTGTATTGTAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAGAGACCCAGGTGACCATGGAAGAGTGCTGAGTTCTGTATTGTAT  900

seq1  ATCTAGTGGTATTGCTTCCCCATGTCTGGACTC-TGCCTCTTGGGAAATG  949
      ||||||||||||||||||||||||||||||||| |||||| |||||||||
seq2  ATCTAGTGGTATTGCTTCCCCATGTCTGGACTCTTGCCTC-TGGGAAATG  949

seq1  ACAAAGAACTCCCCACACTATGTCCCTTACCTCAGCTTTACTCTGGGACA  999
      ||||||||||||||||||||||||||||||||||||||||||   |||||
seq2  ACAAAGAACTCCCCACACTATGTCCCTTACCTCAGCTTTACTTCTGGACA  999

seq1  GAGCCCACACCACAACTCTCCCATCTTATAGCCCTTTGTTAAAAAGAC-T  1048
      ||| ||||| ||| |||||||  ||||||||||||||| ||||| ||| |
seq2  GAG-CCACATCAC-ACTCTCCATTCTTATAGCCCTTTGGTAAAAGGACTT  1047

seq1  AACTTTAGACTGAACCTGAAAGTGCATTTTCCCTCGTAGAG-AATATAGA  1097
      | |||||||||||| ||| ||||||||||||||||| |||| ||||||||
seq2  ACCTTTAGACTGAA-CTG-AAGTGCATTTTCCCTCG-AGAGAAATATAGA  1094

seq1  AGGACGCCAAATCCTTGGCCACATCTCTT  1126
      ||||   ||||| ||| ||||||||||||
seq2  AGGAACTCAAAT-CTTTGCCACATCTCTT  1122


seq1: chr1_23656568_23656990
seq2: B6Ng01-322F23.g_70_492 (reverse)

seq1  TCTTCCTCCCCACGAACAACCATCTATCTTCTCTCCTAGGGAATGTGTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTCCCCACGAACAACCATCTATCTTCTCTCCTAGGGAATGTGTCT  50

seq1  GAGTGAGAGGAAGTCCTCAGTCTCTCGAGAAACTTCAACCCCATCACAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGAGAGGAAGTCCTCAGTCTCTCGAGAAACTTCAACCCCATCACAGT  100

seq1  CAGCTTCACCAGCAGGCTAGAGAAGAGCCCTAAAACAGAACACCTATTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTCACCAGCAGGCTAGAGAAGAGCCCTAAAACAGAACACCTATTAT  150

seq1  CCTCCCCACCCCTGAGCTGCCATCTCTTCAGCAAGGAGCAGCATTTCTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCCACCCCTGAGCTGCCATCTCTTCAGCAAGGAGCAGCATTTCTTC  200

seq1  TTGAATGAACACAAAGAAACTGTGTGGATTCTGGAGGCACTGAGCAGCGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATGAACACAAAGAAACTGTGTGGATTCTGGAGGCACTGAGCAGCGA  250

seq1  TGTCTACTTCCAATCTCGGGTCTGGCATCACATTCAACTATAGCATGTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTACTTCCAATCTCGGGTCTGGCATCACATTCAACTATAGCATGTGA  300

seq1  GCTGCCTTTACACACAGAGGAAGCTTCAGCCCAGTGAATATTCCAACTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCTTTACACACAGAGGAAGCTTCAGCCCAGTGAATATTCCAACTCA  350

seq1  GGGGAAGAACAAAGGAAGGAGGAAAGAGCATTTGTGGGAATCCGGAAGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAAGAACAAAGGAAGGAGGAAAGAGCATTTGTGGGAATCCGGAAGTG  400

seq1  CTAAAGGGAGAATCACAGAATTC  423
      |||||||||||||||||||||||
seq2  CTAAAGGGAGAATCACAGAATTC  423


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