BAC Information

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BAC

Clone NameB6Ng01-322L02
Chromosome1 (Build37)18 (Build37)
Map Location 129,944,509 - 129,944,60580,840,900 - 80,842,039
singlet/doubletsingletsinglet
Overlap geneZranb3
Upstream geneLOC383559, Mgat5, LOC667090, Tmem163, Acmsd, Ccnt2, Ysk4, Rab3gap1, LOC666778, LOC100042670
Downstream geneEG666784, R3hdm1, LOC667109, LOC100042111, Ubxd2, Lct, Mcm6, Dars, LOC620659, Cxcr4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-322L02.bB6Ng01-322L02.g
ACCGA111471GA111472
length9111,128
definitionB6Ng01-322L02.b B6Ng01-322L02.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(129,944,509 - 129,944,605)(80,840,900 - 80,842,039)
sequence
gaattctagttcaagaattgttcaacacaagaaagtcctttattacaatg
cattacattaacgaaaaggaagaatgttatgataatcttaccttttttta
tcctttctttttttctattaggtattttcttcatttacatttccaatgct
atgccaaaagtcccccaaaccccccccccactccccgacccccccactcc
cacttcttggccctggcattcccctgtactgagacataaaaagtttgcaa
gaccaagggacctctctttccaatgatggccaactaggccatcttctgat
acatatgcagctagagacacgagctctggggaatactggttagttcactt
tgccccttcttagaattgggaacaaaacaccatggaaggagttacagaga
caaagtttgaagctgagacaaaaggatggaccatctagagactgccatac
ctggggatccatcccataatcagcctccaaacactgacaccattgcatac
actagcaagattttgctgaaaggacccagatatagctatctcttgtgagg
ctatgccggggcctagcaaacacagaagtggatgctcagagtcagctatt
ggatggatcacagggctcccaatggaggagctagagaaagtacccaagga
gctaaaggggtctgcaaccctataattcctatgatttttaaggtgtgaac
tttatgcatagattaatgaagttatgcttatttgataattcctaccttag
acacttgccactggatgattcctcaagattgtttattcaaaattatattt
attaaaaggttatgtagcagaggactgccttgtctggcctcagtgggaga
ggatgtacttaatcctgtagaaacttgatgcccccagggaaggggggatg
ctgatgggtga
gaattctatgggcagatcacaggcggagctctctgctctccctcccgccc
atgcatgtctcctccgtgctcagcctccttgggtgttcagctcactctga
ctcacgcttttgtttgtttttggtggcacatggcccttagatttctaaac
aaaactaccttcctgcccttcatcctaatggcctattgtgttctgtgatc
gctccacaagacattggcctccctctcgggcccttgtaaattgcaggttt
tctattccatggttcctcaaatgtcccagtcacagccatcctctgcgggc
actccaggtgccacatggtttgctctctctgtctcaattatctccaggca
accttctacccttcatctccttccctgtgtgaaaatggagagtccacaga
agcacaaggtgtgtgcacgcacatggacacagcttaggcttgagaggcct
gcatctcttggagctgtcacattagcacccagacaagtgttcacttcagt
ttgaggccttctaacacatgggaagacctgagagatcacatagtgcagaa
atggcctcttctgatgcctaaccttcctcgtggtgcagcagggctggcct
gggtgcaagtgttagctccttctcttcggcacatcagtgtcggtatgaga
aacagactccctcctccctggagatagatttgagagtttaagtagccagg
actccttgatccagaggtctagacagcccttggccattctcccaaatgtc
tactgaccggtgtcatttgaacatgaaggcacacagctacaatggccagt
tggttgctgaggtcattggcagttgaaggtaggtaccacctgtagcttta
ggcgccagagacagcgctcctttggcccaccctgacctctcctcactccg
caaggtcttcactagcttttaagaagaaaatcaagaagcaggtccctaga
attaacatcacttgctccgttaacaacaccacatgtgttctctgccattg
aagcctcatgggctcttttaaggaagaaagctcaagctgaattgatgtaa
gtggaagaaactgtctggccttatccacagccactatggttgtatggatt
ctccatagaaactggaataggcagacct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_129944509_129944605
seq2: B6Ng01-322L02.b_50_143

seq1  TTCTAGTTCAAGGATTGTTCAACACAAGAAAATCCTTTACTACAATGCAT  50
      |||||||||||| |||||||||||||||||| ||||||| ||||||||||
seq2  TTCTAGTTCAAGAATTGTTCAACACAAGAAAGTCCTTTATTACAATGCAT  50

seq1  TACATTAGTAAAGAAACGGAAGAATGTTATGATAATCTTAACTTTTT  97
      |||||   ||| |||| ||||||||||||||||||||||| ||||||
seq2  TACAT---TAACGAAAAGGAAGAATGTTATGATAATCTTACCTTTTT  94

seq1: chr18_80840900_80842039
seq2: B6Ng01-322L02.g_68_1195

seq1  GAATTCTATGGGCAGATCACAGGCGGAGCTCTCTGCTCTCCCTCCCGCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATGGGCAGATCACAGGCGGAGCTCTCTGCTCTCCCTCCCGCCC  50

seq1  ATGCATGTCTCCTCCGTGCTCAGCCTCCTTGGGTGTTCAGCTCACTCTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATGTCTCCTCCGTGCTCAGCCTCCTTGGGTGTTCAGCTCACTCTGA  100

seq1  CTCACGCTTTTGTTTGTTTTTGGTGGCACATGGCCCTTAGATTTCTAAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACGCTTTTGTTTGTTTTTGGTGGCACATGGCCCTTAGATTTCTAAAC  150

seq1  AAAACTACCTTCCTGCCCTTCATCCTAATGGCCTATTGTGTTCTGTGATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTACCTTCCTGCCCTTCATCCTAATGGCCTATTGTGTTCTGTGATC  200

seq1  GCTCCACAAGACATTGGCCTCCCTCTCGGGCCCTTGTAAATTGCAGGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCACAAGACATTGGCCTCCCTCTCGGGCCCTTGTAAATTGCAGGTTT  250

seq1  TCTATTCCATGGTTCCTCAAATGTCCCAGTCACAGCCATCCTCTGCGGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTCCATGGTTCCTCAAATGTCCCAGTCACAGCCATCCTCTGCGGGC  300

seq1  ACTCCAGGTGCCACATGGTTTGCTCTCTCTGTCTCAATTATCTCCAGGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCAGGTGCCACATGGTTTGCTCTCTCTGTCTCAATTATCTCCAGGCA  350

seq1  ACCTTCTACCCTTCATCTCCTTCCCTGTGTGAAAATGGAGAGTCCACAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCTACCCTTCATCTCCTTCCCTGTGTGAAAATGGAGAGTCCACAGA  400

seq1  AGCACAAGGTGTGTGCACGCACATGGACACAGCTTAGGCTTGAGAGGCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACAAGGTGTGTGCACGCACATGGACACAGCTTAGGCTTGAGAGGCCT  450

seq1  GCATCTCTTGGAGCTGTCACATTAGCACCCAGACAAGTGTTCACTTCAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTCTTGGAGCTGTCACATTAGCACCCAGACAAGTGTTCACTTCAGT  500

seq1  TTGAGGCCTTCTAACACATGGGAAGACCTGAGAGATCACATAGTGCAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGCCTTCTAACACATGGGAAGACCTGAGAGATCACATAGTGCAGAA  550

seq1  ATGGCCTCTTCTGATGCCTAACCTTCCTCGTGGTGCAGCAGGGCTGGCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCCTCTTCTGATGCCTAACCTTCCTCGTGGTGCAGCAGGGCTGGCCT  600

seq1  GGGTGCAAGTGTTAGCTCCTTCTCTTCGGCACATCAGTGTCGGTATGAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGCAAGTGTTAGCTCCTTCTCTTCGGCACATCAGTGTCGGTATGAGA  650

seq1  AACAGACTCCCTCCTCCCTGGAGATAGATTTGAGAGTTTAAGTAGCCAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGACTCCCTCCTCCCTGGAGATAGATTTGAGAGTTTAAGTAGCCAGG  700

seq1  ACTCCTTGATCCAGAGGTCTAGACAGCCCTTGGCCATTCTCCCAAATGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTTGATCCAGAGGTCTAGACAGCCCTTGGCCATTCTCCCAAATGTC  750

seq1  TACTGACCGGTGTCATTTGAACATGAAGGCACACAGCTACAATGGCCAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGACCGGTGTCATTTGAACATGAAGGCACACAGCTACAATGGCCAGT  800

seq1  TGGTTGCTGAGGTCATTGGCAGTTGAAGGTAGGTACCACCTGTAGCTTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGCTGAGGTCATTGGCAGTTGAAGGTAGGTACCACCTGTAGCTTTA  850

seq1  GGCGCCAGAGACAGCGCTCC-TTGGCCCACCCTGACCTCTCCTCACTCCG  899
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GGCGCCAGAGACAGCGCTCCTTTGGCCCACCCTGACCTCTCCTCACTCCG  900

seq1  CAAGGTCTTCACTAGCTTTTAAGAAGAAAATCAAGAAGCAGGGTCCCTAG  949
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CAAGGTCTTCACTAGCTTTTAAGAAGAAAATCAAGAAGCA-GGTCCCTAG  949

seq1  AATTAACATCACTTTGCCCCGTTA--CACACCACATTGTGTTCTCTGCCA  997
      |||||||||||| |||| ||||||   |||||||| ||||||||||||||
seq2  AATTAACATCAC-TTGCTCCGTTAACAACACCACA-TGTGTTCTCTGCCA  997

seq1  TTTGAAGCCTTCATGGGCTC-TTTAAGGAAGGAAAGGCTCAAGCTGAA-T  1045
       |||||||| |||||||||| ||||||||||  || |||||||||||| |
seq2  -TTGAAGCC-TCATGGGCTCTTTTAAGGAAG--AAAGCTCAAGCTGAATT  1043

seq1  GATGGTAAGTGGAAGAAACTGTCCTGGCTTTAATCCCAACAAGCCACTAT  1095
      ||| |||||||||||||||||| ||||| || ||||  || |||||||||
seq2  GAT-GTAAGTGGAAGAAACTGT-CTGGCCTT-ATCC--AC-AGCCACTAT  1087

seq1  -GTTGTATGGTTTCTCCATAAGAAACCCTTGGAGTAGGGCAGACCT  1140
       ||||||||| |||||||| ||||||   |||| || |||||||||
seq2  GGTTGTATGGATTCTCCAT-AGAAAC---TGGAATA-GGCAGACCT  1128