BAC Information

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BAC

Clone NameB6Ng01-322O15
Chromosome1 (Build37)
Map Location 155,725,224 - 155,877,342
singlet/doubletdoublet
Overlap geneTeddm1, LOC100043357, Glul, LOC100043359
Upstream geneSmg7, EG668097, Nmnat2, Lamc2, Lamc1, EG667795, EG626058, 1700012A16Rik, Dhx9, Npl, LOC626096, Rgs8, Rgs16, Rnasel, LOC100043347, Rgsl1, 5830403L16Rik, EG433365
Downstream geneCacna1e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-322O15.bB6Ng01-322O15.g
ACCGA111631GA111632
length7061,174
definitionB6Ng01-322O15.b B6Ng01-322O15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(155,725,224 - 155,725,916)(155,876,150 - 155,877,342)
sequence
gaattcttgcttgttggctaacaagaggctttagtcagactctaggctga
atggctcctctctctccttaggtccccacaatttgtccgtatttctgtcc
tgcctgtctcataaaattcacaaaggaaataacagatgggtcaaaggtta
agaaggagtaatcaggctctaaatacactttgtaaagtgtttatgttata
atagaaggcatgaaaagttttcttgagcaataaagattccacattttctc
atgaacttgtagcagctgtggttacctgcagaaggccccacccaagttgg
agcccttccacattccagaatggatggggaagggacacacacgagggttc
atccaaagctgaggggctactattgattgttcatagcttctatcctcatg
atccagtcaataaccccatactcacgtccatgcaatcaacctaaattata
ctcagtgggttactccgcaatatactgaaagtaggagaggatgcattgga
gagaagggttcctgaggcaggggaataagaggagggaatcaggatgtgtg
attataatcaaaatgcgttataaacatgtatataacactgtcaaagaaaa
aatatatttaaaaaataaattgcatgagttttgataaatgtatatgtaaa
tatatatatatatatatatatatatatatatatatatatatatatatata
tatata
gaattccaacattgattgagcctccagttaatcaagtaagcagttagtca
ggcaggcaggaattctttaatagcaacccatgtgcttacctagaatcagt
ctttcactttaacggcatctgcaactagagaaagaaaagaaaaagcagaa
ctacaggttcctctgaatcatggcccagcccactacccttactcctctgt
ttgcccttgccccttgtcttctcaatggaacaaaccacaaaacaatatga
aggcccctcgcctgagtgatccgtagttttcctcttccagtccaggctga
ctaagaatcatgttgaatagccacagacagttgtataggaactattttcc
aaaatagctttctgagttctgctgagtttgggtcagccctcgggctttct
aacaatacagctttgttctcgtttccttctgatacctgataggcactgtg
cgattgtgctgagcagacgctatgcccacttcacaagcccccagagatat
actgtcattatgaagaaaacaatagcctagtccttgctcctggatggtat
atattcaaggataccgtgtttaattcttctgcttccatgaatagtcttca
agatgaatagcttcaaaattcctgattctctccccaatccccttaaatag
cacatcaaagtcttccctcttcagtctaagtagtgcccattccaggaatt
caggcttctctgggtgagtgtgacccaaaggtggagcaagagtgatttga
gaaggagatttgggtggcagcatagctctttgggcagaacagagttcaat
ttcccaaacaccagcagagccctctcatgtcccagagggcagaggaggca
gactaggaggaaagaagagctacagctgaaggtacaatagccctgcccat
tccagaagctagagaagataccactgcatgataaactgaacaccagtgcc
aaaggcagccacactagcgagaagtccattctctgtacaagtgtgagcat
ttgggggatactgactctgagactacatctcatgtctatagctgtgacag
tgacgaacatcagcactatcagatgtcactgtcagcaatgcttgtgagga
tcttatcgcacttctgccaggaatgtcatattggcacaagtcaatgtaca
aagcccttgggcgcaagaggacat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_155725224_155725916
seq2: B6Ng01-322O15.b_49_741

seq1  GAATTCTTGCTTGTTGGCTAACAAGAGGCTTTAGTCAGACTCTAGGCTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGCTTGTTGGCTAACAAGAGGCTTTAGTCAGACTCTAGGCTGA  50

seq1  ATGGCTCCTCTCTCTCCTTAGGTCCCCACAATTTGTCCGTATTTCTGTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTCCTCTCTCTCCTTAGGTCCCCACAATTTGTCCGTATTTCTGTCC  100

seq1  TGCCTGTCTCATAAAATTCACAAAGGAAATAACAGATGGGTCAAAGGTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGTCTCATAAAATTCACAAAGGAAATAACAGATGGGTCAAAGGTTA  150

seq1  AGAAGGAGTAATCAGGCTCTAAATACACTTTGTAAAGTGTTTATGTTATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGAGTAATCAGGCTCTAAATACACTTTGTAAAGTGTTTATGTTATA  200

seq1  ATAGAAGGCATGAAAAGTTTTCTTGAGCAATAAAGATTCCACATTTTCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAGGCATGAAAAGTTTTCTTGAGCAATAAAGATTCCACATTTTCTC  250

seq1  ATGAACTTGTAGCAGCTGTGGTTACCTGCAGAAGGCCCCACCCAAGTTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACTTGTAGCAGCTGTGGTTACCTGCAGAAGGCCCCACCCAAGTTGG  300

seq1  AGCCCTTCCACATTCCAGAATGGATGGGGAAGGGACACACACGAGGGTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTTCCACATTCCAGAATGGATGGGGAAGGGACACACACGAGGGTTC  350

seq1  ATCCAAAGCTGAGGGGCTACTATTGATTGTTCATAGCTTCTATCCTCATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAAAGCTGAGGGGCTACTATTGATTGTTCATAGCTTCTATCCTCATG  400

seq1  ATCCAGTCAATAACCCCATACTCACGTCCATGCAATCAACCTAAATTATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGTCAATAACCCCATACTCACGTCCATGCAATCAACCTAAATTATA  450

seq1  CTCAGTGGGTTACTCCGCAATATACTGAAAGTAGGAGAGGATGCATTGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTGGGTTACTCCGCAATATACTGAAAGTAGGAGAGGATGCATTGGA  500

seq1  GAGAAGGGTTCCTGAGGCAGGGGAATAAGAGGAGGGAATCAGGATGTGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGGGTTCCTGAGGCAGGGGAATAAGAGGAGGGAATCAGGATGTGTG  550

seq1  ATTATAATCAAAATGCGTTATAAACATGTATATAACACTGTCAAAGAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATAATCAAAATGCGTTATAAACATGTATATAACACTGTCAAAGAAAA  600

seq1  AATATATTTAAAAAATAAATTGCATGAGTTTTGATAAATGTATATGTAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATTTAAAAAATAAATTGCATGAGTTTTGATAAATGTATATGTAAA  650

seq1  TATATATATATATATATATATATATATATATATATATATATAT  693
      |||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATATATATATATATATATATATATATATATATATAT  693

seq1: chr1_155876150_155877342
seq2: B6Ng01-322O15.g_69_1242 (reverse)

seq1  ATGGCCTCT---GCCC-AGGGCTTTGT-CATTGGCTGTGCCCCACTTATT  45
      ||| |||||   |||| |||||||||| ||||| || ||  ||| |   |
seq2  ATGTCCTCTTGCGCCCAAGGGCTTTGTACATTGACT-TGTGCCAAT--AT  47

seq1  GACATTCACTGCCCAAGAAGT-CGATTAAGGATCCTCAACAGCACTGCTG  94
      ||||||| ||| |  |||||| ||||  | ||||||||  |||| |||||
seq2  GACATTC-CTGGC--AGAAGTGCGAT--AAGATCCTCACAAGCATTGCTG  92

seq1  ACAGTGACATTCCTGATAGTGCTGATGTCTGTCACTGTCACCAAGCTATA  144
      ||||||||||  ||||||||||||||||  |||||||||||  |||||||
seq2  ACAGTGACAT--CTGATAGTGCTGATGTTCGTCACTGTCAC--AGCTATA  138

seq1  GACCAATGAGATGTTAGTCTCAGAGGTCAGTATCCCCCAAATGCCTCAAC  194
      |||  |||||||| |||||||||| |||||||||||||||||| ||| ||
seq2  GAC--ATGAGATG-TAGTCTCAGA-GTCAGTATCCCCCAAATG-CTC-AC  182

seq1  ACTTGTACAGAAGAATGGGACTTCTCGCTAGTGTTGGCTGCCCTTTGGCA  244
      |||||||||| ||||| |||||||||||||||| |||||| |||||||||
seq2  ACTTGTACAG-AGAAT-GGACTTCTCGCTAGTG-TGGCTG-CCTTTGGCA  228

seq1  CCTGGTGTTCAGTTTATCATGCAGTTGGTATCTTCTCTAGCTTCTGGAAT  294
       ||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  -CTGGTGTTCAGTTTATCATGCAG-TGGTATCTTCTCTAGCTTCTGGAAT  276

seq1  GGGCAGGGCTATTGTACCTTCAGCTTGTAGCTCTTCTTTCCTCCTAGTCT  344
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GGGCAGGGCTATTGTACCTTCAGC-TGTAGCTCTTCTTTCCTCCTAGTCT  325

seq1  GCCTCCTCTGCCCTCTGGGACATGAGAGGGCTCTGCTGGTGTTTGGGAAA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCTCTGCCCTCTGGGACATGAGAGGGCTCTGCTGGTGTTTGGGAAA  375

seq1  TTGAACTCTGTTCTGCCCAAAGAGCTATGCTGCCACCCAAATCTCCTTCT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACTCTGTTCTGCCCAAAGAGCTATGCTGCCACCCAAATCTCCTTCT  425

seq1  CAAATCACTCTTGCTCCACCTTTGGGTCACACTCACCCAGAGAAGCCTGA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCACTCTTGCTCCACCTTTGGGTCACACTCACCCAGAGAAGCCTGA  475

seq1  ATTCCTGGAATGGGCACTACTTAGACTGAAGAGGGAAGACTTTGATGTGC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTGGAATGGGCACTACTTAGACTGAAGAGGGAAGACTTTGATGTGC  525

seq1  TATTTAAGGGGATTGGGGAGAGAATCAGGAATTTTGAAGCTATTCATCTT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAAGGGGATTGGGGAGAGAATCAGGAATTTTGAAGCTATTCATCTT  575

seq1  GAAGACTATTCATGGAAGCAGAAGAATTAAACACGGTATCCTTGAATATA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACTATTCATGGAAGCAGAAGAATTAAACACGGTATCCTTGAATATA  625

seq1  TACCATCCAGGAGCAAGGACTAGGCTATTGTTTTCTTCATAATGACAGTA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATCCAGGAGCAAGGACTAGGCTATTGTTTTCTTCATAATGACAGTA  675

seq1  TATCTCTGGGGGCTTGTGAAGTGGGCATAGCGTCTGCTCAGCACAATCGC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCTGGGGGCTTGTGAAGTGGGCATAGCGTCTGCTCAGCACAATCGC  725

seq1  ACAGTGCCTATCAGGTATCAGAAGGAAACGAGAACAAAGCTGTATTGTTA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGCCTATCAGGTATCAGAAGGAAACGAGAACAAAGCTGTATTGTTA  775

seq1  GAAAGCCCGAGGGCTGACCCAAACTCAGCAGAACTCAGAAAGCTATTTTG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCCCGAGGGCTGACCCAAACTCAGCAGAACTCAGAAAGCTATTTTG  825

seq1  GAAAATAGTTCCTATACAACTGTCTGTGGCTATTCAACATGATTCTTAGT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATAGTTCCTATACAACTGTCTGTGGCTATTCAACATGATTCTTAGT  875

seq1  CAGCCTGGACTGGAAGAGGAAAACTACGGATCACTCAGGCGAGGGGCCTT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTGGACTGGAAGAGGAAAACTACGGATCACTCAGGCGAGGGGCCTT  925

seq1  CATATTGTTTTGTGGTTTGTTCCATTGAGAAGACAAGGGGCAAGGGCAAA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTGTTTTGTGGTTTGTTCCATTGAGAAGACAAGGGGCAAGGGCAAA  975

seq1  CAGAGGAGTAAGGGTAGTGGGCTGGGCCATGATTCAGAGGAACCTGTAGT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGAGTAAGGGTAGTGGGCTGGGCCATGATTCAGAGGAACCTGTAGT  1025

seq1  TCTGCTTTTTCTTTTCTTTCTCTAGTTGCAGATGCCGTTAAAGTGAAAGA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTTTTTCTTTTCTTTCTCTAGTTGCAGATGCCGTTAAAGTGAAAGA  1075

seq1  CTGATTCTAGGTAAGCACATGGGTTGCTATTAAAGAATTCCTGCCTGCCT  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTCTAGGTAAGCACATGGGTTGCTATTAAAGAATTCCTGCCTGCCT  1125

seq1  GACTAACTGCTTACTTGATTAACTGGAGGCTCAATCAATGTTGGAATTC  1193
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAACTGCTTACTTGATTAACTGGAGGCTCAATCAATGTTGGAATTC  1174