BAC Information

Click to search

BAC

Clone NameB6Ng01-323B18
Chromosome3 (Build37)1 (Build37)
Map Location 114,880,569 - 114,880,921101,408,736 - 101,409,798
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneCol11a1, LOC100043220, Olfm3
Downstream geneEG546808, Edg1, Dph5, LOC626061, Slc30a7, Extl2, Vcam1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-323B18.bB6Ng01-323B18.g
ACCGA111774GA111775
length9761,122
definitionB6Ng01-323B18.b B6Ng01-323B18.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(114,880,569 - 114,880,921)(101,408,736 - 101,409,798)
sequence
gaattccttgtcaccttattccctaaagaccaattagtttaaagggtgca
ctgttccaccaatcatattgtgcctagttgctgatgctctattttgcccc
tggaaaccacataaaaactctgcaaatgggtgtcaggcatcactgcctct
ccttcaggtgtgggacaaccccactgcactggaacaataaattcctcttg
ctttctgcattgaccccagctccacatggttcacttgggtttcccggtaa
gctaaagctccccagagtcttacaagctcacccatatttataattaagat
gattgctagagtaataaaagttaaaaatatttgtggccagtatgggcctg
ctgcccctttttatacaagctttattggatatagtggtagaagcaaattt
aacacgcccaagtttggaaaggagatttcagtgggtatttatctgatatc
aaacaagttcctgatgaactgtttcaggaatttgtggatatgctgctaaa
agcagctagtagaattttggacaccctcaagcaggaattccttttgttgc
acaattgtcttaataagaatgctaatctgccatctggctatatgaagcaa
agacaggattatctgaatacactcatttttgtgcagaaattgaaccctca
tagaatcagggtctggctatggccgctgcctcacaggggactacagtaca
aacaacgctttcacagcacggaggtggtaaagaatgttttaagtatgggg
gcataaatctttttaggaaagactgtgcaaaaattagagacataaacaga
caatagaatcactcccatggaatctatcctcactgcagaagggtggtcat
tgggctaagcctcaatcaacaagctcagattaagaaatacttacatttga
gttaatgctaaactcagaatagcctcagttaggtttgggtagcactgctt
tgtttgcaaaccctgcctagtgaagt
gaattcctgattctctgacaatcctagagaactcattggcctcttagact
ctaaccttttcacccatcagttcacttgggatgattgtcagcagctcttg
cagatccactgaggaaaattaatacattattttggaggcccaaaagaatg
ttccaggagctaacagattgcaacccagaaatctgctgacatagatgatg
gatttcccctcaggagaccagcttgagactataatatggttgaaagggac
cgtctctgagtctattgccaatctctaatggcaggtctcagggcagctgc
tagccacatatttagctaaggtttatgatgtcgggcagaaagataatgaa
ggcccagcagaattgctcgattgtattatgatcattatacccacctagaa
cctgagcaggaggagaattctaacaaagtatcactgacatttataaatca
gtcagcaccagatattagaaggaagttaaagaacttagaaacattagggg
aaaagtcattgagagattttgtggaggtttcggagaaagtgtgccatatt
agggtacacttgcagaatattgttgaagggaaagagcctaagggaggttg
tagaccaatcttaggtaaaaaccaatgtttctactgaaggacattgggca
gaaactagatccaggtgcttggcaaagcatcgacctcctgtgtttataga
gctttaactggttttatacccagtacaagtctgccaatatcccatgtgtc
aagaggcacgaaagggtatcatcatccctcatttcagaaaagctgctggc
tttgggagtactcaggcatgtcaataggcctgggaatactccattattgc
cagtgaagaaaccaaatttcaacgactatcaccctgtccaggacctacag
ggaagttaagttcagagtaatggacatacacacacagtgccctaatcctt
attaccctattgagctctctggccaccagatctgacctagtattgggtat
agacctaagaaatgatgcctttctttcagttactctggttccaaacgcag
aaatattttgcctttgattggtgtgatccaaacgaggcaattaatggata
actcaatgttgactggccagtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_114880569_114880921
seq2: B6Ng01-323B18.b_346_932

seq1  TTGCTAGAGTAATAAAAGTTAAAAACAGCTGTGGCCAGTATGGGCCTGAT  50
      ||||||||||||||||||||||||| |  ||||||||||||||||||| |
seq2  TTGCTAGAGTAATAAAAGTTAAAAATATTTGTGGCCAGTATGGGCCTGCT  50

seq1  GCCCTTTTTTACACAAGCTTTATTGGATATAGTGGTAGAA----------  90
      |||| |||||| ||||||||||||||||||||||||||||          
seq2  GCCCCTTTTTATACAAGCTTTATTGGATATAGTGGTAGAAGCAAATTTAA  100

seq1  ------------------------------------------------AA  92
                                                      ||
seq2  CACGCCCAAGTTTGGAAAGGAGATTTCAGTGGGTATTTATCTGATATCAA  150

seq1  A--------------------------------------------AAATG  98
      |                                            ||| |
seq2  ACAAGTTCCTGATGAACTGTTTCAGGAATTTGTGGATATGCTGCTAAAAG  200

seq1  CAGCCAGT------------------------------------------  106
      |||| |||                                          
seq2  CAGCTAGTAGAATTTTGGACACCCTCAAGCAGGAATTCCTTTTGTTGCAC  250

seq1  --------------------------------------------------  106
                                                        
seq2  AATTGTCTTAATAAGAATGCTAATCTGCCATCTGGCTATATGAAGCAAAG  300

seq1  --------------------------------AGAAATTGTACCCTTATA  124
                                      |||||||| ||||| |||
seq2  ACAGGATTATCTGAATACACTCATTTTTGTGCAGAAATTGAACCCTCATA  350

seq1  CATTCAGAGTCTGGGTCGGGCTACTGCCTTGCAGGGGGAGTACAGTACAA  174
       | |||| |||||| |  |||  ||||||  || ||||| ||||||||||
seq2  GAATCAGGGTCTGGCTATGGCCGCTGCCTCACA-GGGGACTACAGTACAA  399

seq1  ACAATGCTTTCACAGCACCTAGATAATAAGGAAGGTTTTAAGTATGGGGG  224
      |||| |||||||||||||  || |  ||| ||| ||||||||||||||||
seq2  ACAACGCTTTCACAGCACGGAGGTGGTAAAGAATGTTTTAAGTATGGGGG  449

seq1  CATAAATCTTTTTAGGAAAGACTGCTCAAAAATTAGATGCATAAGTAGAC  274
      ||||||||||||||||||||||||  |||||||||||  |||||  ||||
seq2  CATAAATCTTTTTAGGAAAGACTGTGCAAAAATTAGAGACATAAACAGAC  499

seq1  AGTAGAATCACTCCCCTGGAATTTATCCTTACTGCAGGAGAG-----ATA  319
      | ||||||||||||| |||||| |||||| ||||||| || |     || 
seq2  AATAGAATCACTCCCATGGAATCTATCCTCACTGCAGAAGGGTGGTCATT  549

seq1  G----AGGCCTCAGACAATAGACTCAGATTAAGAAATA  353
      |    | ||||||  ||| |  ||||||||||||||||
seq2  GGGCTAAGCCTCAATCAACAAGCTCAGATTAAGAAATA  587

seq1: chr1_101408736_101409798
seq2: B6Ng01-323B18.g_126_1190

seq1  TTTCACCCATCAGTTCACTTGGGATGATTGTCAGCAGCTCTTGCAGATCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACCCATCAGTTCACTTGGGATGATTGTCAGCAGCTCTTGCAGATCC  50

seq1  ACTGAGGAAAATTAATACATTATTTTGGAGGCCCAAAAGAATGTTCCAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGGAAAATTAATACATTATTTTGGAGGCCCAAAAGAATGTTCCAGG  100

seq1  AGCTAACAGATTGCAACCCAGAAATCTGCTGACATAGATGATGGATTTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAACAGATTGCAACCCAGAAATCTGCTGACATAGATGATGGATTTCC  150

seq1  CCTCAGGAGACCAGCTTGAGACTATAATATGGTTGAAAGGGACCGTCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGGAGACCAGCTTGAGACTATAATATGGTTGAAAGGGACCGTCTCT  200

seq1  GAGTCTATTGCCAATCTCTAATGGCAGGTCTCAGGGCAGCTGCTAGCCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCTATTGCCAATCTCTAATGGCAGGTCTCAGGGCAGCTGCTAGCCAC  250

seq1  ATATTTAGCTAAGGTTTATGATGTCGGGCAGAAAGATAATGAAGGCCCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTAGCTAAGGTTTATGATGTCGGGCAGAAAGATAATGAAGGCCCAG  300

seq1  CAGAATTGCTCGATTGTATTATGATCATTATACCCACCTAGAACCTGAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATTGCTCGATTGTATTATGATCATTATACCCACCTAGAACCTGAGC  350

seq1  AGGAGGAGAATTCTAACAAAGTATCACTGACATTTATAAATCAGTCAGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGAGAATTCTAACAAAGTATCACTGACATTTATAAATCAGTCAGCA  400

seq1  CCAGATATTAGAAGGAAGTTAAAGAACTTAGAAACATTAGGGGAAAAGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATATTAGAAGGAAGTTAAAGAACTTAGAAACATTAGGGGAAAAGTC  450

seq1  ATTGAGAGATTTTGTGGAGGTTTCGGAGAAAGTGTGCCATATTAGGGTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGAGATTTTGTGGAGGTTTCGGAGAAAGTGTGCCATATTAGGGTAC  500

seq1  ACTTGCAGAATATTGTTGAAGGGAAAGAGCCTAAGGGAGGTTGTAGACCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCAGAATATTGTTGAAGGGAAAGAGCCTAAGGGAGGTTGTAGACCA  550

seq1  ATCTTAGGTAAAAACCAATGTTTCTACTGAAGGACATTGGGCAGAAACTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTAGGTAAAAACCAATGTTTCTACTGAAGGACATTGGGCAGAAACTA  600

seq1  GATCCAGGTGCTTGGCAAAGCATCGACCTCCTGTGTTTATAGAGCTTTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCAGGTGCTTGGCAAAGCATCGACCTCCTGTGTTTATAGAGCTTTAA  650

seq1  CTGGTTTTATACCCAGTACAAGTCTGCCAATATCCCATGTGTCAAGAGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTTTATACCCAGTACAAGTCTGCCAATATCCCATGTGTCAAGAGGC  700

seq1  ACGAAAGGGTATCATCATCCCTCATTTCAG-AAAGCTGCTGGCTTTGGGA  749
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  ACGAAAGGGTATCATCATCCCTCATTTCAGAAAAGCTGCTGGCTTTGGGA  750

seq1  GTACTCAGGCATGTCAATAGGCCT-GGAATACTCCATTATTGCCAGTGAA  798
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GTACTCAGGCATGTCAATAGGCCTGGGAATACTCCATTATTGCCAGTGAA  800

seq1  GAAACCAAATTTCAACGACTATCACCCTGTCCAGGACCTACA-GGAAGTT  847
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GAAACCAAATTTCAACGACTATCACCCTGTCCAGGACCTACAGGGAAGTT  850

seq1  AAGTTCAGAGTAATGGACATACACACCACAGTG-CCTAATCCTTA-TACC  895
      ||||||||||||||||||||||||| ||||||| ||||||||||| ||||
seq2  AAGTTCAGAGTAATGGACATACACA-CACAGTGCCCTAATCCTTATTACC  899

seq1  CTATTGAGCTCTCTGG-CACCAGATCTGAACTAGTATTTGGTAATAGACC  944
      |||||||||||||||| |||||||||||| |||||||| ||| |||||||
seq2  CTATTGAGCTCTCTGGCCACCAGATCTGACCTAGTATTGGGT-ATAGACC  948

seq1  TAAAGAATGAATGCTTTC-TTCAGTTTACTCTTGGTTCCAAAACGCCAGA  993
      |||  |||||   ||||| ||||| |||||| ||||||| ||||| ||||
seq2  TAAGAAATGATGCCTTTCTTTCAG-TTACTC-TGGTTCC-AAACG-CAGA  994

seq1  AATATTTTGCCTTTGAATGGTGTGATCCAAAAGGAGGC-ATTAATGGATA  1042
      |||||||||||||||| ||||||||||| ||| ||||| |||||||||||
seq2  AATATTTTGCCTTTGATTGGTGTGATCC-AAACGAGGCAATTAATGGATA  1043

seq1  ACTC-ATGTGGAATGGCCAGTT  1063
      |||| |||| || |||||||||
seq2  ACTCAATGTTGACTGGCCAGTT  1065