BAC Information

Click to search

BAC

Clone NameB6Ng01-323H12
Chromosome1 (Build37)
Map Location 77,480,589 - 77,587,920
singlet/doubletdoublet
Overlap geneEpha4, LOC100039330
Upstream geneLOC100039137, Tfdp1-ps
Downstream genePax3, LOC100039210, Sgpp2, LOC100039382, Farsb, Mogat1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-323H12.bB6Ng01-323H12.g
ACCGA112035GA112036
length1,1451,111
definitionB6Ng01-323H12.b B6Ng01-323H12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,480,589 - 77,481,740)(77,586,806 - 77,587,920)
sequence
gaattctttctgtaggccaatccggtcctgaactcagagatctatctgct
tctgtctttggaattttgggattaaatgtgtgagctgctaccacctggca
aaaaaaagaaaagaaaaaagaaagaaagaaaagaaaagaaaaggtacaga
taatttgaaggcaggtccagccaggctctaagaaatagtagcaccattgc
cataagctgcaaactcttcctttaaagatttatttgcaagaaaagtctct
gcattcttctctttttaaagctagaatcgtgtcaacagattcctgggtaa
aactgtatcatctggaaagccgacagggaactaactggttatgcagtaag
cacaaaatgagtgatttattggcttgaactaagagcctcaaacaccctgg
gatggagcagccatgtgcgagctgggtcgtaagtcttctgtcctgagaca
cgaatgaaaatctccttagggatacagccctacctgtaatttatttccac
attattcttatgtgcaatattatttttggcatgttaatgtattgtcaaag
aattccaatctagtgacatgacaaaaggtgtatatcatatccgaatgtaa
aaagtgtgaaaatcaattgaattatttatcaatgacattcaataaaggta
agcagtatattctgggtaatgtcatttctccggaatacatcactgcccta
tgagcttgtattaattactagagttttttttatcctaactgcagtgatca
gttagatttgctgaagaaagatgaaaaccaagagtcctccctcttatccc
tttaagagagagcaattggacagaatccatgtaattttagatggtttttc
cctttcttggcaatggactaaacctgtaagtttacatttggcagataaaa
taaatgctggatgtcaaagttagtctttgatctgataaataaacccacag
aaaattcagcctcaattacacttcaaatttattaacattcagtatgtagc
agagggtaacacatgcaagttatgtgccatgccttgaattatgctacaaa
gccagcagacgctgcctacaataaacaccaccacactggacatctcccgc
ttcccttctcatcacccaatctgtgtatcgcaatgaattgctcgg

gaattctctgagcagacaaaatataaaccaagatttctgagaaagtttta
ctaccattgacctgcattcattcttacaacctgtgaagtcacttggggag
acctctgctcatgcctgcaagggtgatgctgattatgttgactgatatga
gatgtcccatcttagttgttggtgggaccatttcttggacagaagatcct
gggatgtataaaatggagaaagcaaacgaaagtgctagcatgcattcatt
gatctccacttcctgactgcagatgcgatgtgacttgctagcactctgta
cttgctacggtggactctaccgtactttatccctatctactttatccctt
tccatgcttaatttcttaagtcattcgaagcttagttctctaaaattctg
tctggccagtgatggcctctcttcagtgcctccctagagttagcttgtca
ttttctggtaggtagaaacctgtggtacatgtacactcagtacatgtgtg
tgagattataaatgcccggtagggtgagagtagctagccctagatacgca
tagaatgagtgctgggagatgtcttagaggacttaactttgtctagccta
catcaacagaaggaaactgagactcagagaatctcatctttaagccttag
tgaaataaaaaggaagtgacataaaagaccatctcaaaagaaaggagatg
cagggttccatgcatcctgctgagttttctacgctctcccttcttaattc
agttcctcattacaacctagagctgcctgcccatttctcctggtaacgtt
ttcatacagctgttaaatatggggtggctcaaagagattctcacatgaaa
acagcccataccatagagaatgtgagagagaccactgtacacagatgtct
ctttgcttcccattccactaaagtccctccctaaatctagcatcctttgt
gtcctagattttcttgacgctttttgtggaaaagaatctattgaaattgt
ttttctgtgagttgtggcatttagacgaccaccacctttaccatcattta
gatagtggaaagtgaagtcgtcttttattaaaatgattgtttgacctgat
atctaaatcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_77480589_77481740
seq2: B6Ng01-323H12.b_44_1188

seq1  GAATTCTTTCTGTAGGCCAATCCGGTCCTGAACTCAGAGATCTATCTGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCTGTAGGCCAATCCGGTCCTGAACTCAGAGATCTATCTGCT  50

seq1  TCTGTCTTTGGAATTTTGGGATTAAATGTGTGAGCTGCTACCACCTGGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTTTGGAATTTTGGGATTAAATGTGTGAGCTGCTACCACCTGGCA  100

seq1  AAAAAAAGAAAAGAAAAAAGAAAGAAAGAAAAGAAAAGAAAAGGTACAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAGAAAAGAAAAAAGAAAGAAAGAAAAGAAAAGAAAAGGTACAGA  150

seq1  TAATTTGAAGGCAGGTCCAGCCAGGCTCTAAGAAATAGTAGCACCATTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTGAAGGCAGGTCCAGCCAGGCTCTAAGAAATAGTAGCACCATTGC  200

seq1  CATAAGCTGCAAACTCTTCCTTTAAAGATTTATTTGCAAGAAAAGTCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGCTGCAAACTCTTCCTTTAAAGATTTATTTGCAAGAAAAGTCTCT  250

seq1  GCATTCTTCTCTTTTTAAAGCTAGAATCGTGTCAACAGATTCCTGGGTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTCTTCTCTTTTTAAAGCTAGAATCGTGTCAACAGATTCCTGGGTAA  300

seq1  AACTGTATCATCTGGAAAGCCGACAGGGAACTAACTGGTTATGCAGTAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTATCATCTGGAAAGCCGACAGGGAACTAACTGGTTATGCAGTAAG  350

seq1  CACAAAATGAGTGATTTATTGGCTTGAACTAAGAGCCTCAAACACCCTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAATGAGTGATTTATTGGCTTGAACTAAGAGCCTCAAACACCCTGG  400

seq1  GATGGAGCAGCCATGTGCGAGCTGGGTCGTAAGTCTTCTGTCCTGAGACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGAGCAGCCATGTGCGAGCTGGGTCGTAAGTCTTCTGTCCTGAGACA  450

seq1  CGAATGAAAATCTCCTTAGGGATACAGCCCTACCTGTAATTTATTTCCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAATGAAAATCTCCTTAGGGATACAGCCCTACCTGTAATTTATTTCCAC  500

seq1  ATTATTCTTATGTGCAATATTATTTTTGGCATGTTAATGTATTGTCAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTCTTATGTGCAATATTATTTTTGGCATGTTAATGTATTGTCAAAG  550

seq1  AATTCCAATCTAGTGACATGACAAAAGGTGTATATCATATCCGAATGTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCAATCTAGTGACATGACAAAAGGTGTATATCATATCCGAATGTAA  600

seq1  AAAGTGTGAAAATCAATTGAATTATTTATCAATGACATTCAATAAAGGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGTGAAAATCAATTGAATTATTTATCAATGACATTCAATAAAGGTA  650

seq1  AGCAGTATATTCTGGGTAATGTCATTTCTCCGGAATACATCACTGCCCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTATATTCTGGGTAATGTCATTTCTCCGGAATACATCACTGCCCTA  700

seq1  TGAGCTTGTATTAATTACTAGAGTTTTTTTTATCCTAACTGCAGTGATCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTTGTATTAATTACTAGAGTTTTTTTTATCCTAACTGCAGTGATCA  750

seq1  GTTAGATTTGCTGAAGAAAGATGAAAACCAAGAGTCCTCCCTCTTATCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGATTTGCTGAAGAAAGATGAAAACCAAGAGTCCTCCCTCTTATCCC  800

seq1  TTTAAGAGAGAGCAATTGGACAGAATCCATGTAATTTTAGATGGTTTTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGAGAGAGCAATTGGACAGAATCCATGTAATTTTAGATGGTTTTTC  850

seq1  CCTTTCTTGGCAATGGACTAAACCTGTAAGTTTACATTTGGCAGATAAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCTTGGCAATGGACTAAACCTGTAAGTTTACATTTGGCAGATAAAA  900

seq1  TAAATGCTGGATGTCAAAGTTAGTCTTTGATCTGATAAATAAACCCACAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGCTGGATGTCAAAGTTAGTCTTTGATCTGATAAATAAACCCACAG  950

seq1  AAAATTCAGCCTCAATTACACTTCAAATTTATTAACATTCAGTATTGTAG  1000
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AAAATTCAGCCTCAATTACACTTCAAATTTATTAACATTCAGTA-TGTAG  999

seq1  CAAGAGGGTAACACATGCAGGTTATGTGCCATGCCCTTGAA-TATGCTAC  1049
      | ||||||||||||||||| ||||||||||||| ||||||| ||||||||
seq2  C-AGAGGGTAACACATGCAAGTTATGTGCCATG-CCTTGAATTATGCTAC  1047

seq1  AAAAGCCAAGCAGACGCCTGCCTACAAATAAACACAACCACACT-GACAT  1098
       |||||| |||||||| |||||||| ||||||||| |||||||| |||||
seq2  -AAAGCC-AGCAGACG-CTGCCTAC-AATAAACACCACCACACTGGACAT  1093

seq1  CTCCCCGCTTTCCCTTCCTCATTCACCC-ATCTGTGTATCGCAGTG-ATT  1146
      || ||||| ||||||| |||| |||||| |||||||||||||| || |||
seq2  CT-CCCGC-TTCCCTT-CTCA-TCACCCAATCTGTGTATCGCAATGAATT  1139

seq1  GCTCGG  1152
      ||||||
seq2  GCTCGG  1145


seq1: chr1_77586806_77587920
seq2: B6Ng01-323H12.g_66_1176 (reverse)

seq1  TAGATTTAGAATATCAGGTCAAACAATCATTTTTAAATAAAGACGACCTT  50
      ||||||||| ||||||||||||||||||| ||||||  |||||||||  |
seq2  TAGATTTAG-ATATCAGGTCAAACAATCA-TTTTAATAAAAGACGAC--T  46

seq1  TCAC-TTCCACTATCTAAATTGGATGGTTAAGGTGGTGGTCGTCTAAATG  99
      |||| |||||||||||||||  |||||| |||||||||||||||||||||
seq2  TCACTTTCCACTATCTAAAT--GATGGTAAAGGTGGTGGTCGTCTAAATG  94

seq1  CCACAACCTCACAGGAAAAC-ATTTCAATAGATTCTTTTCCCACAAAAGC  148
      |||||| ||||||| ||||| ||||||||||||||||||||   ||||||
seq2  CCACAA-CTCACAGAAAAACAATTTCAATAGATTCTTTTCCACAAAAAGC  143

seq1  GTCA--GAAATCTAGGACACAAAGGATGCTAAGATTTAGGGAGGGACTTT  196
      ||||   ||||||||||||||||||||||| |||||||||||||||||||
seq2  GTCAAGAAAATCTAGGACACAAAGGATGCT-AGATTTAGGGAGGGACTTT  192

seq1  AGTGGAATGGGAAGCAAAGAGACATCTGTGTACAGTGGTCTCTCTCACAT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGAATGGGAAGCAAAGAGACATCTGTGTACAGTGGTCTCTCTCACAT  242

seq1  TCTCTATGGTATGGGCTGTTTTCATGTGAGAATCTCTTTGAGCCACCCCA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTATGGTATGGGCTGTTTTCATGTGAGAATCTCTTTGAGCCACCCCA  292

seq1  TATTTAACAGCTGTATGAAAACGTTACCAGGAGAAATGGGCAGGCAGCTC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAACAGCTGTATGAAAACGTTACCAGGAGAAATGGGCAGGCAGCTC  342

seq1  TAGGTTGTAATGAGGAACTGAATTAAGAAGGGAGAGCGTAGAAAACTCAG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTTGTAATGAGGAACTGAATTAAGAAGGGAGAGCGTAGAAAACTCAG  392

seq1  CAGGATGCATGGAACCCTGCATCTCCTTTCTTTTGAGATGGTCTTTTATG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATGCATGGAACCCTGCATCTCCTTTCTTTTGAGATGGTCTTTTATG  442

seq1  TCACTTCCTTTTTATTTCACTAAGGCTTAAAGATGAGATTCTCTGAGTCT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTCCTTTTTATTTCACTAAGGCTTAAAGATGAGATTCTCTGAGTCT  492

seq1  CAGTTTCCTTCTGTTGATGTAGGCTAGACAAAGTTAAGTCCTCTAAGACA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTCCTTCTGTTGATGTAGGCTAGACAAAGTTAAGTCCTCTAAGACA  542

seq1  TCTCCCAGCACTCATTCTATGCGTATCTAGGGCTAGCTACTCTCACCCTA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCAGCACTCATTCTATGCGTATCTAGGGCTAGCTACTCTCACCCTA  592

seq1  CCGGGCATTTATAATCTCACACACATGTACTGAGTGTACATGTACCACAG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGGCATTTATAATCTCACACACATGTACTGAGTGTACATGTACCACAG  642

seq1  GTTTCTACCTACCAGAAAATGACAAGCTAACTCTAGGGAGGCACTGAAGA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTACCTACCAGAAAATGACAAGCTAACTCTAGGGAGGCACTGAAGA  692

seq1  GAGGCCATCACTGGCCAGACAGAATTTTAGAGAACTAAGCTTCGAATGAC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCATCACTGGCCAGACAGAATTTTAGAGAACTAAGCTTCGAATGAC  742

seq1  TTAAGAAATTAAGCATGGAAAGGGATAAAGTAGATAGGGATAAAGTACGG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAAATTAAGCATGGAAAGGGATAAAGTAGATAGGGATAAAGTACGG  792

seq1  TAGAGTCCACCGTAGCAAGTACAGAGTGCTAGCAAGTCACATCGCATCTG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTCCACCGTAGCAAGTACAGAGTGCTAGCAAGTCACATCGCATCTG  842

seq1  CAGTCAGGAAGTGGAGATCAATGAATGCATGCTAGCACTTTCGTTTGCTT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCAGGAAGTGGAGATCAATGAATGCATGCTAGCACTTTCGTTTGCTT  892

seq1  TCTCCATTTTATACATCCCAGGATCTTCTGTCCAAGAAATGGTCCCACCA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCATTTTATACATCCCAGGATCTTCTGTCCAAGAAATGGTCCCACCA  942

seq1  ACAACTAAGATGGGACATCTCATATCAGTCAACATAATCAGCATCACCCT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTAAGATGGGACATCTCATATCAGTCAACATAATCAGCATCACCCT  992

seq1  TGCAGGCATGAGCAGAGGTCTCCCCAAGTGACTTCACAGGTTGTAAGAAT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGCATGAGCAGAGGTCTCCCCAAGTGACTTCACAGGTTGTAAGAAT  1042

seq1  GAATGCAGGTCAATGGTAGTAAAACTTTCTCAGAAATCTTGGTTTATATT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGCAGGTCAATGGTAGTAAAACTTTCTCAGAAATCTTGGTTTATATT  1092

seq1  TTGTCTGCTCAGAGAATTC  1115
      |||||||||||||||||||
seq2  TTGTCTGCTCAGAGAATTC  1111


| Home | SequenceCutter | Blast | Download |