BAC Information

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BAC

Clone NameB6Ng01-324F12
Chromosome1 (Build37)
Map Location 118,720,840 - 118,791,255
singlet/doubletdoublet
Overlap genenone
Upstream geneCntnap5a
Downstream geneB020011L13Rik, LOC100041684, LOC636972
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-324F12.bB6Ng01-324F12.g
ACCGA112683GA112684
length1,191778
definitionB6Ng01-324F12.b B6Ng01-324F12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,790,048 - 118,791,255)(118,720,840 - 118,721,617)
sequence
gaattcagggaaattagcaagtaaaatacaacttggtgttggaataaata
ttaaacaactaattaggcttggtaaaaatctcagaagtttgaagtaacaa
agttcggctacattagaaaacaaatgtatcaatagacactaagaaatctt
tgggcaacagaaaaagggttttattatgagagggaagtcacatgattact
gtactgaaggaaccaatattgtcaggacagtcctgaactcattagcatat
accttcatcaggaaccccagaaatgactgcttctacaatgccaatgtaga
acctgcctctacaaaagaagctggggaaccttatttcaattgcttgtgta
actttcaaattgtggtttaagatcaaatatcttcaccagggccttgggtt
tcctagaaaacaaggcaattgtactcactaggctgaacctcacttctaga
ttctaaggccaactctaccctcaagggcaggttggtgagacaagataagt
aggaggcaaaacatgatggaaaatcaaaataatgggccttgagcacaatg
gatgcaggataaagctgccataccagtcctcactcccatacaacttcccc
tgattcaacatttgccttttttcatctcaaaatgggtaaacctaggtctt
gattactaacagagacctcatgtatttgaagttttaccaattcaaagaaa
aattaagaagggatctatttaaggttttagaagttagaaaaaatggaaag
agatgttttaagtcaatctaagaattcataccatattcctttgataaaag
aatggagatgaacagatgagaatgtgccaatcacacagagaatgagacaa
ttgagtttaaaattgagtaattctgtttggaagcatgaatggctgaactg
aagttcaaagggcaaactatggacaccccttccttacactcacagccatg
aaaatttcatcacataaaacttaagacattgactgccatacctgagatgc
aaaaagcctaagaatatagaaaaaatgtcttcacccatttttcattgctc
agaaaacattttattcactctgcatgcttagagaggatattgtacctaga
gaattgctctcagttaagagctctgctgttttgcagatctggatagtttc
caatctccatgagcagcttcacatctacctgaacaattagt

gaattcttactctccatttttaaatcccaggaggtcagaaatgtatgagg
aaaagggaaaggccctcatttacttattgcaaatgacaatgtatttagta
cttgagtctctgtttgccactttggatttcaaacaaacagtgtaaggata
cttaggatatttgcatcacatatttttttgtgaatacagcagtgattacc
agggcagagcaagtatctgtggagtaagatagtgagtcctttttccatgt
accaatgagtggtacacatctaggtcatgtgttactttttgagaattctc
cacattgatttccatagttgttgcgctagtttaaaatcttgctactctga
atgtattttcccatttccctgcaggatttccaatcaattgctttggttat
atttgcttttaagactgaagcaatatgacttctgaaaatctttggagatt
ctagggcttttgaatgggtcattgtttatttcatttatgattttattatg
tattctagaaatttaatcctctgtcaaacacagagctgacaaagatcccc
tcctattctatagaatttcctccttgcttggttttgtttagctatgttga
agctatttagctttataaattccaacttgtcaattgttggccttaattct
tatgaaaaagggagttctattcagaggataatttaagtagatacttaata
gagagatgagagaaagatatattgtgcgtgtgtgtgtgtgtgtgtataca
tatatatatatatatatatagagagaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_118790048_118791255
seq2: B6Ng01-324F12.b_46_1236 (reverse)

seq1  ACTAAT--GTCAGGTAGATGTG-AGCTGCCTTCCATGGGAGA-TGGAGAC  46
      ||||||   ||||||||||||| ||||||    ||| ||||| |||| ||
seq2  ACTAATTGTTCAGGTAGATGTGAAGCTGC---TCAT-GGAGATTGGAAAC  46

seq1  TATCCAGATCCTCTGCAAAAACAGCAAGAGCTCTTTACTGAAGAGCCATT  96
      ||||||||   ||||| |||||||| ||||||||| |||| |||| || |
seq2  TATCCAGA---TCTGC-AAAACAGC-AGAGCTCTTAACTG-AGAG-CAAT  89

seq1  TCTCTAGGTAC-ATATCCCTCCTTCT-TAAGCAATGCAGGAGGTGGAATA  144
      ||||||||||| ||||||     ||| ||||| ||||| |||   |||||
seq2  TCTCTAGGTACAATATCC-----TCTCTAAGC-ATGCA-GAG--TGAATA  130

seq1  AAATGTTTTCTGAGCAAATTGAAAAATGGGTGAAGACATTTTTTCTATAT  194
      |||||||||||||||||  |||||||||||||||||||||||||||||||
seq2  AAATGTTTTCTGAGCAA--TGAAAAATGGGTGAAGACATTTTTTCTATAT  178

seq1  TCTTAGGCTTTTTTGCATCTCAGGTATGGCAGTCAATGTCTTAAGTTTTA  244
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGGC-TTTTTGCATCTCAGGTATGGCAGTCAATGTCTTAAGTTTTA  227

seq1  TGTGATGAAATTTTCATGGCTGTGAGTGTAAGGAAGGGGTGTCCATAGTT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATGAAATTTTCATGGCTGTGAGTGTAAGGAAGGGGTGTCCATAGTT  277

seq1  TGCCCTTTGAACTTCAGTTCAGCCATTCATGCTTCCAAACAGAATTACTC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTTTGAACTTCAGTTCAGCCATTCATGCTTCCAAACAGAATTACTC  327

seq1  AATTTTAAACTCAATTGTCTCATTCTCTGTGTGATTGGCACATTCTCATC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTAAACTCAATTGTCTCATTCTCTGTGTGATTGGCACATTCTCATC  377

seq1  TGTTCATCTCCATTCTTTTATCAAAGGAATATGGTATGAATTCTTAGATT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCATCTCCATTCTTTTATCAAAGGAATATGGTATGAATTCTTAGATT  427

seq1  GACTTAAAACATCTCTTTCCATTTTTTCTAACTTCTAAAACCTTAAATAG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTAAAACATCTCTTTCCATTTTTTCTAACTTCTAAAACCTTAAATAG  477

seq1  ATCCCTTCTTAATTTTTCTTTGAATTGGTAAAACTTCAAATACATGAGGT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTTCTTAATTTTTCTTTGAATTGGTAAAACTTCAAATACATGAGGT  527

seq1  CTCTGTTAGTAATCAAGACCTAGGTTTACCCATTTTGAGATGAAAAAAGG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTTAGTAATCAAGACCTAGGTTTACCCATTTTGAGATGAAAAAAGG  577

seq1  CAAATGTTGAATCAGGGGAAGTTGTATGGGAGTGAGGACTGGTATGGCAG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGTTGAATCAGGGGAAGTTGTATGGGAGTGAGGACTGGTATGGCAG  627

seq1  CTTTATCCTGCATCCATTGTGCTCAAGGCCCATTATTTTGATTTTCCATC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATCCTGCATCCATTGTGCTCAAGGCCCATTATTTTGATTTTCCATC  677

seq1  ATGTTTTGCCTCCTACTTATCTTGTCTCACCAACCTGCCCTTGAGGGTAG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTTGCCTCCTACTTATCTTGTCTCACCAACCTGCCCTTGAGGGTAG  727

seq1  AGTTGGCCTTAGAATCTAGAAGTGAGGTTCAGCCTAGTGAGTACAATTGC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGCCTTAGAATCTAGAAGTGAGGTTCAGCCTAGTGAGTACAATTGC  777

seq1  CTTGTTTTCTAGGAAACCCAAGGCCCTGGTGAAGATATTTGATCTTAAAC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTTTCTAGGAAACCCAAGGCCCTGGTGAAGATATTTGATCTTAAAC  827

seq1  CACAATTTGAAAGTTACACAAGCAATTGAAATAAGGTTCCCCAGCTTCTT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATTTGAAAGTTACACAAGCAATTGAAATAAGGTTCCCCAGCTTCTT  877

seq1  TTGTAGAGGCAGGTTCTACATTGGCATTGTAGAAGCAGTCATTTCTGGGG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGAGGCAGGTTCTACATTGGCATTGTAGAAGCAGTCATTTCTGGGG  927

seq1  TTCCTGATGAAGGTATATGCTAATGAGTTCAGGACTGTCCTGACAATATT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGATGAAGGTATATGCTAATGAGTTCAGGACTGTCCTGACAATATT  977

seq1  GGTTCCTTCAGTACAGTAATCATGTGACTTCCCTCTCATAATAAAACCCT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCCTTCAGTACAGTAATCATGTGACTTCCCTCTCATAATAAAACCCT  1027

seq1  TTTTCTGTTGCCCAAAGATTTCTTAGTGTCTATTGATACATTTGTTTTCT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTGTTGCCCAAAGATTTCTTAGTGTCTATTGATACATTTGTTTTCT  1077

seq1  AATGTAGCCGAACTTTGTTACTTCAAACTTCTGAGATTTTTACCAAGCCT  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAGCCGAACTTTGTTACTTCAAACTTCTGAGATTTTTACCAAGCCT  1127

seq1  AATTAGTTGTTTAATATTTATTCCAACACCAAGTTGTATTTTACTTGCTA  1194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGTTGTTTAATATTTATTCCAACACCAAGTTGTATTTTACTTGCTA  1177

seq1  ATTTCCCTGAATTC  1208
      ||||||||||||||
seq2  ATTTCCCTGAATTC  1191


seq1: chr1_118720840_118721617
seq2: B6Ng01-324F12.g_66_843

seq1  GAATTCTTACTCTCCATTTTTAAATCCCAGGAGGTCAGAAATGTATGAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTACTCTCCATTTTTAAATCCCAGGAGGTCAGAAATGTATGAGG  50

seq1  AAAAGGGAAAGGCCCTCATTTACTTATTGCAAATGACAATGTATTTAGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGGAAAGGCCCTCATTTACTTATTGCAAATGACAATGTATTTAGTA  100

seq1  CTTGAGTCTCTGTTTGCCACTTTGGATTTCAAACAAACAGTGTAAGGATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGTCTCTGTTTGCCACTTTGGATTTCAAACAAACAGTGTAAGGATA  150

seq1  CTTAGGATATTTGCATCACATATTTTTTTGTGAATACAGCAGTGATTACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGGATATTTGCATCACATATTTTTTTGTGAATACAGCAGTGATTACC  200

seq1  AGGGCAGAGCAAGTATCTGTGGAGTAAGATAGTGAGTCCTTTTTCCATGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCAGAGCAAGTATCTGTGGAGTAAGATAGTGAGTCCTTTTTCCATGT  250

seq1  ACCAATGAGTGGTACACATCTAGGTCATGTGTTACTTTTTGAGAATTCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAATGAGTGGTACACATCTAGGTCATGTGTTACTTTTTGAGAATTCTC  300

seq1  CACATTGATTTCCATAGTTGTTGCGCTAGTTTAAAATCTTGCTACTCTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTGATTTCCATAGTTGTTGCGCTAGTTTAAAATCTTGCTACTCTGA  350

seq1  ATGTATTTTCCCATTTCCCTGCAGGATTTCCAATCAATTGCTTTGGTTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATTTTCCCATTTCCCTGCAGGATTTCCAATCAATTGCTTTGGTTAT  400

seq1  ATTTGCTTTTAAGACTGAAGCAATATGACTTCTGAAAATCTTTGGAGATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCTTTTAAGACTGAAGCAATATGACTTCTGAAAATCTTTGGAGATT  450

seq1  CTAGGGCTTTTGAATGGGTCATTGTTTATTTCATTTATGATTTTATTATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGGCTTTTGAATGGGTCATTGTTTATTTCATTTATGATTTTATTATG  500

seq1  TATTCTAGAAATTTAATCCTCTGTCAAACACAGAGCTGACAAAGATCCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTAGAAATTTAATCCTCTGTCAAACACAGAGCTGACAAAGATCCCC  550

seq1  TCCTATTCTATAGAATTTCCTCCTTGCTTGGTTTTGTTTAGCTATGTTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTATTCTATAGAATTTCCTCCTTGCTTGGTTTTGTTTAGCTATGTTGA  600

seq1  AGCTATTTAGCTTTATAAATTCCAACTTGTCAATTGTTGGCCTTAATTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATTTAGCTTTATAAATTCCAACTTGTCAATTGTTGGCCTTAATTCT  650

seq1  TATGAAAAAGGGAGTTCTATTCAGAGGATAATTTAAGTAGATACTTAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAAAAGGGAGTTCTATTCAGAGGATAATTTAAGTAGATACTTAATA  700

seq1  GAGAGATGAGAGAAAGATATATTGTGCGTGTGTGTGTGTGTGTGTATACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGATGAGAGAAAGATATATTGTGCGTGTGTGTGTGTGTGTGTATACA  750

seq1  TATATATATATATATATATAGAGAGAGA  778
      ||||||||||||||||||||||||||||
seq2  TATATATATATATATATATAGAGAGAGA  778


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