BAC Information

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BAC

Clone NameB6Ng01-324H04
Chromosome1 (Build37)
Map Location 58,456,195 - 58,596,960
singlet/doubletdoublet
Overlap geneBzw1, Clk1, Ppil3, Nif3l1, Orc2l, BC049806
Upstream gene1110034B05Rik, 9430016H08Rik, LOC667339, 2810022L02Rik, Kctd18, Sgol2, Aox1, Aox3, Aox4, Aox3l1, EG628262
Downstream geneNdufb3, EG667397, Als2cr12, Cflar, LOC100042431, Casp8, EG667419, Trak2, Als2cr2, 4930408G06Rik, EG667447, Als2cr11, Als2cr4, Mpp4, Als2, Als2cr7, Fzd7, Gm973
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-324H04.bB6Ng01-324H04.g
ACCGA112759GA112760
length9571,095
definitionB6Ng01-324H04.b B6Ng01-324H04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,596,007 - 58,596,960)(58,456,195 - 58,457,281)
sequence
gaattcttctgcacatgggaacatttaatatccttgtatcttctttatac
aatcttttgtttcatgtagacctgttaccctgttttctaatgtggtctct
tttcagcactttataaatagccaattaataacatgactagccacaaaatt
agaaccatcttagaaattttagattctctatatggaaaactattgtttcg
atatagttcatatcatgattatcatgaatactttaaatagattattctga
atagcaacatggttaaaaaaaaccaatttgtataaagaagcatctgttag
ctactataaacagttaggataattcagaaatgataacttggaagtgagag
ctttgttttataactaaagcaatagaacttggggtaggtttttggttttt
ttttttgtttttttttaagttctaaagatcagagatatctattggaagta
ctaagtgatccatcccataggtataatggacagtgggaccttggccagga
agtacttgatgacatcatttacagagctcagctagaactcttttctcagc
cactcttggtaagtttgtttgtttgtttgtttgtttgttttaacatatgt
acacttttttccatggagaatggaagtctattgatttaggtcctattctg
gaggcatgctgactcttcttaaagcatatatgtggtcaaatgttattatg
gggcaaatggcaagtgggtattgaggtaaattgaaaactgaaatgtttca
ccaggcagtggtggtagacatattctctgaagttcaaagccagcttggtc
taacagagtgaagttccatgacagccaaagtttacacaaaagagaacgtc
tggtctgaaagaactagggggtcaagggagcattggtttgaaatccttaa
gaaaagagaaaccaggtactagtagcacttggagcccttgacccggcaga
ttgcaca
gaattctctctctttaagaaaggccataaaccaggttggggtagcacatg
actataatcccattgaaaaattgagttaggagggtcatgaattcaaggtc
atcctaggttatatagtgtttactactgcaagcctagactactttagagc
ctgtttgagttgccaccccacccccacatactaagctagacatggtaatt
cacgcctgtaattccaacattcaggagacagaggctagatgatttgaggt
agacttgggctatttatggggagactatgtctaaaaataagatgaacaaa
aataattttttcttgtgatcactgtattaagaaaaaaaatgaacatattg
aagaaaaaaaatgaacataatgatccaggctggcctggaacttgctttgt
agcccaccttaggcttgaactttagcaacccttaagcaattcccagtgct
gtatgctctgttgccatactccacttcatggttatattttaatacttgta
agcataagggaagaatttatgtatctaaccctgaaatttggtgtttgtgt
ctagttgtatagttgtatacaaaaaaaggtgtagttgtattttgtaatat
tcctgttttttgagcaatagctagcatatagtgatggaagttactaaaaa
gtatagttttggtatgtgatgagattttacagtatagagtccattttggc
tctaggaataactttaatcttcttctaggtttttaacaagctaatcaggc
gctacaaatacctggagaaaggttttgaagatgaagttaaaaaggtaggt
ggaggagttggatagggcatatggcctgcacaagacccagtgtttgagtc
tctagcagccccagattggacatagtattagacatttaaatagactctta
ctgaaataccatttggggagtatagcagttattttattgaaattatttga
aatttacattgtcacttagtatttgtgttgaaaaaaattgacatttaaat
atctagagactctgagggatgaattggtggaaggatcagagcatgaagtt
gcctagagaagtaccctccattcctactgcggattacttcacaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_58596007_58596960
seq2: B6Ng01-324H04.b_48_1004 (reverse)

seq1  TGTGCAATCTGCCTGCGTCCATGTGCTTCCATGTGCTACTTAGTACTTGG  50
      ||||||||||||| | || || | || |||| ||||||| |||||| |||
seq2  TGTGCAATCTGCC-GGGT-CAAGGGC-TCCAAGTGCTAC-TAGTACCTGG  46

seq1  TTTTCTCTTTTCTTAAGGATTTCAAACC-ATGCCTCCCTGACCCCCTAGT  99
       ||||||||||||||||||||||||||| ||||  || ||||||||||||
seq2  -TTTCTCTTTTCTTAAGGATTTCAAACCAATGCTCCCTTGACCCCCTAGT  95

seq1  TCTTCAAGACAAG-CG-TCTC-TCTGTGT-AACTTTGGCTGTCATGGAAC  145
      ||||  |||| || || |||| | ||||| ||||||||||||||||||||
seq2  TCTTTCAGACCAGACGTTCTCTTTTGTGTAAACTTTGGCTGTCATGGAAC  145

seq1  -TCACTCTG-TAGACCAAGCTGGCTTTGAAC-TCAGAG-ATATGTCTACC  191
       |||||||| ||||||||||||||||||||| |||||| |||||||||||
seq2  TTCACTCTGTTAGACCAAGCTGGCTTTGAACTTCAGAGAATATGTCTACC  195

seq1  ACCACTGCCTGGTGAAACATTTCAGTTTTCAATTTACCTCAATACCCACT  241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTGCCTGGTGAAACATTTCAGTTTTCAATTTACCTCAATACCCACT  245

seq1  TGCCATTTGCCCCATAATAACATTTTGACCACATATATGCTTTAAGAAGA  291
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TGCCATTTGCCCCATAATAACA-TTTGACCACATATATGCTTTAAGAAGA  294

seq1  GTCAGCATGCCTCCAGAATAGGACCTAAATCAATAGACTTCCATTCTCCA  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGCATGCCTCCAGAATAGGACCTAAATCAATAGACTTCCATTCTCCA  344

seq1  TGGAAAAAAGTGTACATATGTTAAAACAAACAAACAAACAAACAAACAAA  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAAAAGTGTACATATGTTAAAACAAACAAACAAACAAACAAACAAA  394

seq1  CTTACCAAGAGTGGCTGAGAAAAGAGTTCTAGCTGAGCTCTGTAAATGAT  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACCAAGAGTGGCTGAGAAAAGAGTTCTAGCTGAGCTCTGTAAATGAT  444

seq1  GTCATCAAGTACTTCCTGGCCAAGGTCCCACTGTCCATTATACCTATGGG  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATCAAGTACTTCCTGGCCAAGGTCCCACTGTCCATTATACCTATGGG  494

seq1  ATGGATCACTTAGTACTTCCAATAGATATCTCTGATCTTTAGAACTTAAA  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATCACTTAGTACTTCCAATAGATATCTCTGATCTTTAGAACTTAAA  544

seq1  AAAAAACAAAAAAAAAAACCAAAAACCTACCCCAAGTTCTATTGCTTTAG  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAACAAAAAAAAAAACCAAAAACCTACCCCAAGTTCTATTGCTTTAG  594

seq1  TTATAAAACAAAGCTCTCACTTCCAAGTTATCATTTCTGAATTATCCTAA  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAAACAAAGCTCTCACTTCCAAGTTATCATTTCTGAATTATCCTAA  644

seq1  CTGTTTATAGTAGCTAACAGATGCTTCTTTATACAAATTGGTTTTTTTTA  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTATAGTAGCTAACAGATGCTTCTTTATACAAATTGGTTTTTTTTA  694

seq1  ACCATGTTGCTATTCAGAATAATCTATTTAAAGTATTCATGATAATCATG  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGTTGCTATTCAGAATAATCTATTTAAAGTATTCATGATAATCATG  744

seq1  ATATGAACTATATCGAAACAATAGTTTTCCATATAGAGAATCTAAAATTT  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGAACTATATCGAAACAATAGTTTTCCATATAGAGAATCTAAAATTT  794

seq1  CTAAGATGGTTCTAATTTTGTGGCTAGTCATGTTATTAATTGGCTATTTA  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGATGGTTCTAATTTTGTGGCTAGTCATGTTATTAATTGGCTATTTA  844

seq1  TAAAGTGCTGAAAAGAGACCACATTAGAAAACAGGGTAACAGGTCTACAT  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTGCTGAAAAGAGACCACATTAGAAAACAGGGTAACAGGTCTACAT  894

seq1  GAAACAAAAGATTGTATAAAGAAGATACAAGGATATTAAATGTTCCCATG  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAAAAGATTGTATAAAGAAGATACAAGGATATTAAATGTTCCCATG  944

seq1  TGCAGAAGAATTC  954
      |||||||||||||
seq2  TGCAGAAGAATTC  957

seq1: chr1_58456195_58457281
seq2: B6Ng01-324H04.g_64_1158

seq1  GAATTCTCTCTCTTTAAGAAAGGCCATAAACCAGGTTGGGGTAGCACATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCTCTTTAAGAAAGGCCATAAACCAGGTTGGGGTAGCACATG  50

seq1  ACTATAATCCCATTGAAAAATTGAGTTAGGAGGGTCATGAATTCAAGGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATAATCCCATTGAAAAATTGAGTTAGGAGGGTCATGAATTCAAGGTC  100

seq1  ATCCTAGGTTATATAGTGTTTACTACTGCAAGCCTAGACTACTTTAGAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTAGGTTATATAGTGTTTACTACTGCAAGCCTAGACTACTTTAGAGC  150

seq1  CTGTTTGAGTTGCCACCCCACCCCCACATACTAAGCTAGACATGGTAATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTGAGTTGCCACCCCACCCCCACATACTAAGCTAGACATGGTAATT  200

seq1  CACGCCTGTAATTCCAACATTCAGGAGACAGAGGCTAGATGATTTGAGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGCCTGTAATTCCAACATTCAGGAGACAGAGGCTAGATGATTTGAGGT  250

seq1  AGACTTGGGCTATTTATGGGGAGACTATGTCTAAAAATAAGATGAACAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTGGGCTATTTATGGGGAGACTATGTCTAAAAATAAGATGAACAAA  300

seq1  AATAATTTTTTCTTGTGATCACTGTATTAAGAAAAAAAATGAACATATTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATTTTTTCTTGTGATCACTGTATTAAGAAAAAAAATGAACATATTG  350

seq1  AAGAAAAAAAATGAACATAATGATCCAGGCTGGCCTGGAACTTGCTTTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAAAAATGAACATAATGATCCAGGCTGGCCTGGAACTTGCTTTGT  400

seq1  AGCCCACCTTAGGCTTGAACTTTAGCAACCCTTAAGCAATTCCCAGTGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCACCTTAGGCTTGAACTTTAGCAACCCTTAAGCAATTCCCAGTGCT  450

seq1  GTATGCTCTGTTGCCATACTCCACTTCATGGTTATATTTTAATACTTGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGCTCTGTTGCCATACTCCACTTCATGGTTATATTTTAATACTTGTA  500

seq1  AGCATAAGGGAAGAATTTATGTATCTAACCCTGAAATTTGGTGTTTGTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATAAGGGAAGAATTTATGTATCTAACCCTGAAATTTGGTGTTTGTGT  550

seq1  CTAGTTGTATAGTTGTATACAAAAAAAGGTGTAGTTGTATTTTGTAATAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTTGTATAGTTGTATACAAAAAAAGGTGTAGTTGTATTTTGTAATAT  600

seq1  TCCTGTTTTTTGAGCAATAGCTAGCATATAGTGATGGAAGTTACTAAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTTTTTTGAGCAATAGCTAGCATATAGTGATGGAAGTTACTAAAAA  650

seq1  GTATAGTTTTGGTATGTGATGAGATTTTACAGTATAGAGTCCATTTTGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAGTTTTGGTATGTGATGAGATTTTACAGTATAGAGTCCATTTTGGC  700

seq1  TCTAGGAATAACTTTAATCTTCTTCTAGGTTTTTAACAAGCTAATCAGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGGAATAACTTTAATCTTCTTCTAGGTTTTTAACAAGCTAATCAGGC  750

seq1  GCTACAAATACCTGGAGAAAGGTTTTGAAGATGAAGTTAAAAAGGTAGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACAAATACCTGGAGAAAGGTTTTGAAGATGAAGTTAAAAAGGTAGGT  800

seq1  GGAGGAGTTGGATAGGGCATATGGCCTGCACAAGACCCAGTG-TTGAGTC  849
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GGAGGAGTTGGATAGGGCATATGGCCTGCACAAGACCCAGTGTTTGAGTC  850

seq1  TCTAGCAGCCCCAGATTGGACATAGTATTAGACATTTAAATAGACTCTTA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGCAGCCCCAGATTGGACATAGTATTAGACATTTAAATAGACTCTTA  900

seq1  CTGAAATACCATTTGGGGAGTATAGCAGTTATTTTATTGAAA-TATTTGA  948
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CTGAAATACCATTTGGGGAGTATAGCAGTTATTTTATTGAAATTATTTGA  950

seq1  AATTTACATTGTCACTTAGTA-TTGTGTTGAAAAAAAATGACAATTAAAA  997
      ||||||||||||||||||||| ||||||||||||||| ||||| ||||| 
seq2  AATTTACATTGTCACTTAGTATTTGTGTTGAAAAAAATTGACATTTAAAT  1000

seq1  ATCTAGAGACTCTGA-GGATGAA-TGGT-GAAGGATCAGAGCATGAGGT-  1043
      ||||||||||||||| ||||||| |||| ||||||||||||||||| || 
seq2  ATCTAGAGACTCTGAGGGATGAATTGGTGGAAGGATCAGAGCATGAAGTT  1050

seq1  -GCTAGAGAAGTTACCTCCATTCCTACTGCCGAATACTTCACAAA  1087
        ||||||||||  |||||||||||||||| || |||||||||||
seq2  GCCTAGAGAAGTACCCTCCATTCCTACTGCGGATTACTTCACAAA  1095