BAC Information

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BAC

Clone NameB6Ng01-324H15
Chromosome4 (Build37)1 (Build37)
Map Location 135,185,241 - 135,186,17759,857,326 - 59,857,734
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneMan1c1, Ldlrap1, Tmem57, Rhd, Tmem50a, D4Wsu53e, Syf2, Runx3, Clic4, LOC676072, Srrm1, A330049M08Rik, LOC665287, Dscr1l2, Npal3, 4930555I21Rik, Grhl3, 1700029M20Rik
Downstream geneIl28ra, Il22ra1, LOC665334, Myom3, Fusip1, Pnrc2, Cnr2, Fuca1, Hmgcl, Gale, Lypla2, 1110049F12Rik, LOC669445, Tceb3, Rpl11, Id3, E2f2, Ddefl1, Tcea3, Zfp46, Hnrpr, Htr1d, LOC100042540, Luzp1, Aof2, LOC667080, LOC433770, 4930549C01Rik, BC029684
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-324H15.bB6Ng01-324H15.g
ACCGA112781GA112782
length938654
definitionB6Ng01-324H15.b B6Ng01-324H15.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(135,185,241 - 135,186,177)(59,857,326 - 59,857,734)
sequence
gaattcaagcatttgtaatctagagtgggacattgccagtgcatggctgt
cattaatggccacacaattcaagtcccttctgccctttgcctttcaataa
tatgtctaaagcctagagccttcacttcaatttcttggctcccatttaac
cagcccaagtaacgggatcatccaaggtcatttccaacctgtggacactg
ggttgttagctggaaggacccatgtgtgccctggtctctggcgcatgggg
ccaatcttagtttcagcagaatagtcatagttacaccccagtcttggatc
ttggagttttcttatttatgaagcaagccccaaatacctcctcaagccag
aagcctgatgggagaattcattaatgcccttgcctgacccttgagaatga
aaaagggtcagggaaagttggacttgctgagtgtctagcacaatccttga
catcttgcacatcctttagtgagccttcacattagcccgaggaacccaca
gaagacgcctatgactcaagaattatcggccaacatgtggacttcctgct
gatgtctgcacttgcattagaggaggctctggaataccatttgtggtaat
ggaccacttctgtatcttgattgtggtgatgattatatgggatcaaatct
cacaggagcaaatggcacaggctgcgtgctgagcggaagcctctggactc
ttaaagaaggcttctgagttagtgaaattggactacagccaacttgctgg
ctcagagttttgtggtcacattagatgttgctactgggggaagctgggga
acggtccatggaaccctctatctctgctatttaaggcttgtgagtcttaa
actagaataaaatgaaatatttgaaaaagtgcaatcattaagaaagggct
gggggcggagttgtcagtggtgggagttgggggcgggg
gaattcactctctaggccaggctggccttgaactcacagagctccacctg
cctttgcctcccctcctgtgtgctgggatcaaagtcttatgccactaccg
cttggcatgattgtatttaatatagggtttcatgtagcccagtttggtct
caaacttgctatgtagcctaggctaaccttgaaagtgtgtgtatgtgcgt
gtgcgcgagagtatgtgtgtgtgggtggtttgaggcagggtttatttgtg
tagttttgcctgtcctaaagctttctctgtagacctggctggcctagaac
tcacagagattctcctgcctctgcctccccaaatgctggtcatagggatg
gttaaagggatgtaccaccatagcccagctgagcttgaacaagatttatt
tatttattttatgtatatgagtacattgtagctggacagatggttgtgag
ccaccgtgtggttgctgggaattgtactcaggacctctggaagagcagtc
agtgctcttaagcgctgagtcatctctccagcccaagcttgaactcttaa
ccctcctgccccatctcccaaagtactggcattacaggtatttgctacca
cgcccagcttagtatcactttttttttttttctcttaagacagggtttct
ctgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_135185241_135186177
seq2: B6Ng01-324H15.b_47_984

seq1  GAATTCAAGCATTTGTAATCTAGAGTGGGACATTGCCAGTGCATGGCTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGCATTTGTAATCTAGAGTGGGACATTGCCAGTGCATGGCTGT  50

seq1  CATTAATGGCCACACAATTCAAGTCCCTTCTGCCCTTTGCCTTTCAATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAATGGCCACACAATTCAAGTCCCTTCTGCCCTTTGCCTTTCAATAA  100

seq1  TATGTCTAAAGCCTAGAGCCTTCACTTCAATTTCTTGGCTCCCATTTAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTCTAAAGCCTAGAGCCTTCACTTCAATTTCTTGGCTCCCATTTAAC  150

seq1  CAGCCCAAGTAACGGGATCATCCAAGGTCATTTCCAACCTGTGGACACTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCAAGTAACGGGATCATCCAAGGTCATTTCCAACCTGTGGACACTG  200

seq1  GGTTGTTAGCTGGAAGGACCCATGTGTGCCCTGGTCTCTGGCGCATGGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTTAGCTGGAAGGACCCATGTGTGCCCTGGTCTCTGGCGCATGGGG  250

seq1  CCAATCTTAGTTTCAGCAGAATAGTCATAGTTACACCCCAGTCTTGGATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATCTTAGTTTCAGCAGAATAGTCATAGTTACACCCCAGTCTTGGATC  300

seq1  TTGGAGTTTTCTTATTTATGAAGCAAGCCCCAAATACCTCCTCAAGCCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGTTTTCTTATTTATGAAGCAAGCCCCAAATACCTCCTCAAGCCAG  350

seq1  AAGCCTGATGGGAGAATTCATTAATGCCCTTGCCTGACCCTTGAGAATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTGATGGGAGAATTCATTAATGCCCTTGCCTGACCCTTGAGAATGA  400

seq1  AAAAGGGTCAGGGAAAGTTGGACTTGCTGAGTGTCTAGCACAATCCTTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGGTCAGGGAAAGTTGGACTTGCTGAGTGTCTAGCACAATCCTTGA  450

seq1  CATCTTGCACATCCTTTAGTGAGCCTTCACATTAGCCCGAGGAACCCACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTGCACATCCTTTAGTGAGCCTTCACATTAGCCCGAGGAACCCACA  500

seq1  GAAGACGCCTATGACTCAAGAATTATCGGCCAACATGTGGACTTCCTGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACGCCTATGACTCAAGAATTATCGGCCAACATGTGGACTTCCTGCT  550

seq1  GATGTCTGCACTTGCATTAGAGGAGGCTCTGGAATACCATTTGTGGTAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTCTGCACTTGCATTAGAGGAGGCTCTGGAATACCATTTGTGGTAAT  600

seq1  GGACCACTTCTGTATCTTGATTGTGGTGATGATTATATGGGATCAAATCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCACTTCTGTATCTTGATTGTGGTGATGATTATATGGGATCAAATCT  650

seq1  CACAGGAGCAAATGGCACAGGCTGCGTGCTGAGCGGAAGCCTCTGGACTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGAGCAAATGGCACAGGCTGCGTGCTGAGCGGAAGCCTCTGGACTC  700

seq1  TTAAAGAAGGCTTCTGAGTTAGTGAAATTGGACTACAGCCAACTTGCTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGAAGGCTTCTGAGTTAGTGAAATTGGACTACAGCCAACTTGCTGG  750

seq1  CTCAGAGTTTTGTGGTCACATTAGATGTTGCTACTGGGGGAAGCTGGGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAGTTTTGTGGTCACATTAGATGTTGCTACTGGGGGAAGCTGGGGA  800

seq1  ACGGTCCATGGAACCCTCTATCTCTGCTATTTAAGGCTTGTGAGTCTTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGTCCATGGAACCCTCTATCTCTGCTATTTAAGGCTTGTGAGTCTTAA  850

seq1  ACTAGAATAAAATGAAATATTTGAAAAAGTGCAATCATTAAGAAAGGGCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGAATAAAATGAAATATTTGAAAAAGTGCAATCATTAAGAAAGGGCT  900

seq1  GGGGGCGGAGTTGTCAGTGGTGGGAG-TGGGGGCGGGG  937
      |||||||||||||||||||||||||| |||||||||||
seq2  GGGGGCGGAGTTGTCAGTGGTGGGAGTTGGGGGCGGGG  938

seq1: chr1_59857326_59857734
seq2: B6Ng01-324H15.g_457_720 (reverse)

seq1  ACAGAGAAACCCTGTCTCAAAAAACCAAAAAAAAAAAAAAAATCAAGTAA  50
      |||||||||||||||||         || | |||||||||||  |||| |
seq2  ACAGAGAAACCCTGTCT--------TAAGAGAAAAAAAAAAA--AAGTGA  40

seq1  ATCTTTTTTTTTTATTTTAGCATATTCACAGTTAAACTACTATCACTT--  98
        ||    |     |  ||||| || | | ||   | | | |  ||||  
seq2  TACTAAGCTGGGCGTGGTAGCAAATAC-CTGT---AATGCCAGTACTTTG  86

seq1  --ACA------AGTAATTTTAAAATATTTTTATG--GGGGCTGGAGAGAT  138
        | |      || |   |||| |    || | |   |||||||||||||
seq2  GGAGATGGGGCAGGAGGGTTAAGA---GTTCAAGCTTGGGCTGGAGAGAT  133

seq1  GGCTCAGAGGTTAAGAGCACTGACTACTCTTCCAAAGGTCCTGAGTTCAA  188
      | ||||| | ||||||||||||||| ||||||                  
seq2  GACTCAGCGCTTAAGAGCACTGACTGCTCTTC------------------  165

seq1  ATCCCAGCAACCACATGGTGGCTCACAACTATCCATAATGAGATCTGACG  238
                                                        
seq2  --------------------------------------------------  165

seq1  CCTTCTTCTGGTGTGTTTGAAGACAGCTACAGTGAACTTACATATAATAA  288
                                                        
seq2  --------------------------------------------------  165

seq1  TAAATCTTTGGGCCGGAGCGAGCAGAGGTCCTGAGTTCAATTCCCAGCAA  338
                            |||||||||||||| |||||||||||||
seq2  ----------------------CAGAGGTCCTGAGTACAATTCCCAGCAA  193

seq1  CCACATGATGGCTCACAACTATCTGTACAGCTATAATGTACTCATATACA  388
      ||||| | ||||||||||| |||||| |||||| ||||||||||||||||
seq2  CCACACGGTGGCTCACAACCATCTGTCCAGCTACAATGTACTCATATACA  243

seq1  TAAAATAAATAAATAAATCTT  409
      |||||||||||||||||||||
seq2  TAAAATAAATAAATAAATCTT  264