BAC Information

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BAC

Clone NameB6Ng01-324K10
Chromosome1 (Build37)
Map Location 127,459,359 - 127,581,475
singlet/doubletdoublet
Overlap geneSlc35f5
Upstream geneLOC666998, Actr3
Downstream geneLypd1, E030049G20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-324K10.bB6Ng01-324K10.g
ACCGA112909GA112910
length1,1901,061
definitionB6Ng01-324K10.b B6Ng01-324K10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(127,580,297 - 127,581,475)(127,459,359 - 127,460,405)
sequence
gaattctgggacatccagaaccatgaaaaaaaaataataaaatggcaaat
gaatgagtaaataaataaataaataaataaaatagtggtcttgggagaca
accccacccttgatggtgtttacaaaccagactttcagctagcagaacct
taagaaaaaaagtgtgtgttttggaaggaaccatgggatggttcttacag
cagccaactgagaccaatccaaggggaggggggaactcagtgaagccaga
ctacagacaaccccatgtcaaggacagtagtctgcactgacgtcagcgtg
ataggatggagccaacttcctattttagaaggttggattagagctgaggt
accaaaggaagtgtcaatcgctatagtatgaaggagagccaaggtccaag
caaaagaagatgcagactcaggctggaggcatggtccagcaagggagcac
ttgcctaactgcacttgtaaaaatctcagggttcattcctcagtatcacc
aagtccaaacaaagaacaaagggtaggttcattccgactgatggtatttc
ctgagaatggtaggaagagcactagggtaccacaggtcatttggagatgc
ttacaaaagaaaggtaacaccggaggctaaacaacattcatttacatgac
agactgaagccatgatgaccaaacttctctctaaaactcagtgagcatgg
gtgggaggagttgaggttagagagtcacttagcagaggatatagcagaag
ggaaacacaggtgggatgcagctagttggtaagagcttgcctagcaggca
cgaagctctgggttccatccccagcactgcacaaactggatgtgatggtg
accaccttacaggccgcacatatatgcagcaggtaaaatactcacacaca
ttacttttttgtttttttttaagacaggatctcactatgtagccctggct
ggcctttaaactcacacagaatccacctgcctccgccttcctgagtatgt
gacttaaggcgcaatgccagtatattccagctatgaaattatttttaaat
aataaacattaattattgcaggagcaggaagagctgattagtgtccagat
caaggttcttttgtctcagaaagcagactggtaccatgacttccaagtta
aatatctcctcatgcactgtttcttcataaacgaaatttt

gaattctttgtttttctttggtactgaattagtgtcatttaaagtaaaaa
ttgacaggatgctctttgttgttttctgaaggtacaaaaactttgtgtgt
atgtgtgtctatatatgcacatgtgtgcacacgtgcctgtggaggccaga
agggggcatctgagtccttggaacttagataattgttagtcctgtaacgt
gggtactggggactaaactctgaaggaatactaagctctttgaatcatgg
agccatttctacagtcctacctacagctttctcacatttgtaggaaacat
atctcagaagatttttttttaattacataaaaggtggttttgtgttagtc
aaaattgaatttatttcttcataaatactgttttttagggaacaaacatt
gagggacagtagaaagtaagggtctgggtatatagcttagtagattcttg
atacataagaataaatttgaaaaagagggtatttttggaaaataaacata
agtcatcagatttttcatgtataagccactgttatccacatgcatacact
ggtgaatccacacttgtgtgtttactgagtcacacatttttatcaaaatt
gcagtgtttggcttcagttaagctgtttgttaatcgatgtctcattggga
gtagtgtggtactttgagtttataagctaattttactttgagtttgtata
cttcttttttgttaatgatccttgtaagaagaagataacaatttttgttg
tttatagtttttattacatttattttatttacttatttattttagatgta
tgtgtgtgtaaatgtgccaaggattttagaacacaaaagttgtagattaa
attataaatttaaacaatttatatctagaggtttagaaaagttattgagg
catttatgttgtatacagaatatgtattttagggtacttttgtttattct
gtttatttatttgttcacagggcaacttgtggaagtctgtttttctcctt
tctatttttatgggttccagggatcaatttcatgtttattaaggttggtt
agcaagagcca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_127580297_127581475
seq2: B6Ng01-324K10.b_45_1234 (reverse)

seq1  -AAAATTCGTTTATGAAGAAACAGTGCATGAGGAGAATATTAAATTGGAA  49
       ||| |||||||||||||||||||||||||||||||   |||| ||||||
seq2  AAAATTTCGTTTATGAAGAAACAGTGCATGAGGAGATATTTAACTTGGAA  50

seq1  GTTCAGGGGTCCAGTCTGGCCTCCTG-GAC-AAAGACCCTTGATCTGG-C  96
      | ||| ||  ||||||| || | ||| ||| ||||| ||||||||||| |
seq2  G-TCATGGTACCAGTCT-GCTTTCTGAGACAAAAGAACCTTGATCTGGAC  98

seq1  ACT-ATCAGCTCTTCCTGCCTCTTCCATTATTATTG-TTATTATTTTAAA  144
      ||| |||||||||||||||  || | || |||| || ||||||||| |||
seq2  ACTAATCAGCTCTTCCTGCTCCTGCAATAATTAATGTTTATTATTTAAAA  148

seq1  AT-ATTTCATAGCTGG-ATATACTGGCA-TGCGCCTTTAGTCACCATACT  191
      || ||||||||||||| ||||||||||| |||||||| ||||| ||||||
seq2  ATAATTTCATAGCTGGAATATACTGGCATTGCGCCTTAAGTCA-CATACT  197

seq1  CAGG-AGGCGGAGGCAGGTGGA-TCTGTGTGAGTTT-AAGGCCAGCCAGG  238
      |||| ||||||||||||||||| ||||||||||||| |||||||||||||
seq2  CAGGAAGGCGGAGGCAGGTGGATTCTGTGTGAGTTTAAAGGCCAGCCAGG  247

seq1  GCTACATAGTGAGATCCTGTCTTAAAAAAAA--CAAAAAGTAATGTGTGT  286
      |||||||||||||||||||||||||||||||   ||||||||||||||||
seq2  GCTACATAGTGAGATCCTGTCTTAAAAAAAAACAAAAAAGTAATGTGTGT  297

seq1  GAGTATTTTACCTGCTGCATATATGTGCGGCCTGTAAGGTGGTCACCATC  336
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTATTTTACCTGCTGCATATATGTGCGGCCTGTAAGGTGGTCACCATC  347

seq1  ACATCCAGTTTGTGCAGTGCTGGGGATGGAACCCAGAGCTTCGTGCCTGC  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCCAGTTTGTGCAGTGCTGGGGATGGAACCCAGAGCTTCGTGCCTGC  397

seq1  TAGGCAAGCTCTTACCAACTAGCTGCATCCCACCTGTGTTTCCCTTCTGC  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCAAGCTCTTACCAACTAGCTGCATCCCACCTGTGTTTCCCTTCTGC  447

seq1  TATATCCTCTGCTAAGTGACTCTCTAACCTCAACTCCTCCCACCCATGCT  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCCTCTGCTAAGTGACTCTCTAACCTCAACTCCTCCCACCCATGCT  497

seq1  CACTGAGTTTTAGAGAGAAGTTTGGTCATCATGGCTTCAGTCTGTCATGT  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAGTTTTAGAGAGAAGTTTGGTCATCATGGCTTCAGTCTGTCATGT  547

seq1  AAATGAATGTTGTTTAGCCTCCGGTGTTACCTTTCTTTTGTAAGCATCTC  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAATGTTGTTTAGCCTCCGGTGTTACCTTTCTTTTGTAAGCATCTC  597

seq1  CAAATGACCTGTGGTACCCTAGTGCTCTTCCTACCATTCTCAGGAAATAC  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGACCTGTGGTACCCTAGTGCTCTTCCTACCATTCTCAGGAAATAC  647

seq1  CATCAGTCGGAATGAACCTACCCTTTGTTCTTTGTTTGGACTTGGTGATA  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGTCGGAATGAACCTACCCTTTGTTCTTTGTTTGGACTTGGTGATA  697

seq1  CTGAGGAATGAACCCTGAGATTTTTACAAGTGCAGTTAGGCAAGTGCTCC  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGAATGAACCCTGAGATTTTTACAAGTGCAGTTAGGCAAGTGCTCC  747

seq1  CTTGCTGGACCATGCCTCCAGCCTGAGTCTGCATCTTCTTTTGCTTGGAC  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTGGACCATGCCTCCAGCCTGAGTCTGCATCTTCTTTTGCTTGGAC  797

seq1  CTTGGCTCTCCTTCATACTATAGCGATTGACACTTCCTTTGGTACCTCAG  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCTCTCCTTCATACTATAGCGATTGACACTTCCTTTGGTACCTCAG  847

seq1  CTCTAATCCAACCTTCTAAAATAGGAAGTTGGCTCCATCCTATCACGCTG  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAATCCAACCTTCTAAAATAGGAAGTTGGCTCCATCCTATCACGCTG  897

seq1  ACGTCAGTGCAGACTACTGTCCTTGACATGGGGTTGTCTGTAGTCTGGCT  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTCAGTGCAGACTACTGTCCTTGACATGGGGTTGTCTGTAGTCTGGCT  947

seq1  TCACTGAGTTCCCCCCTCCCCTTGGATTGGTCTCAGTTGGCTGCTGTAAG  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGAGTTCCCCCCTCCCCTTGGATTGGTCTCAGTTGGCTGCTGTAAG  997

seq1  AACCATCCCATGGTTCCTTCCAAAACACACACTTTTTTTCTTAAGGTTCT  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATCCCATGGTTCCTTCCAAAACACACACTTTTTTTCTTAAGGTTCT  1047

seq1  GCTAGCTGAAAGTCTGGTTTGTAAACACCATCAAGGGTGGGGTTGTCTCC  1086
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGCTGAAAGTCTGGTTTGTAAACACCATCAAGGGTGGGGTTGTCTCC  1097

seq1  CAAGACCACTATTTTATTTATTTATTTATTTATTTACTCATTCATTTGCC  1136
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGACCACTATTTTATTTATTTATTTATTTATTTACTCATTCATTTGCC  1147

seq1  ATTTTATTATTTTTTTTTCATGGTTCTGGATGTCCCAGAATTC  1179
      |||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATTATTTTTTTTTCATGGTTCTGGATGTCCCAGAATTC  1190


seq1: chr1_127459359_127460405
seq2: B6Ng01-324K10.g_68_1128

seq1  GAATTCTTTGTTTTTCTTTGGTACTGAATTAGTGTCATTTAAAGTAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTTTTCTTTGGTACTGAATTAGTGTCATTTAAAGTAAAAA  50

seq1  TTGACAGGATGCTCTTTGTTGTTTTCTGAAGGTACAAAAACTTTGTGTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACAGGATGCTCTTTGTTGTTTTCTGAAGGTACAAAAACTTTGTGTGT  100

seq1  ATGTGTGTCTATATATGCACATGTGTGCACACGTGCCTGTGGAGGCCAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTGTCTATATATGCACATGTGTGCACACGTGCCTGTGGAGGCCAGA  150

seq1  AGGGGGCATCTGAGTCCTTGGAACTTAGATAATTGTTAGTCCTGTAACGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGGCATCTGAGTCCTTGGAACTTAGATAATTGTTAGTCCTGTAACGT  200

seq1  GGGTACTGGGGACTAAACTCTGAAGGAATACTAAGCTCTTTGAATCATGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTACTGGGGACTAAACTCTGAAGGAATACTAAGCTCTTTGAATCATGG  250

seq1  AGCCATTTCTACAGTCCTACCTACAGCTTTCTCACATTTGTAGGAAACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATTTCTACAGTCCTACCTACAGCTTTCTCACATTTGTAGGAAACAT  300

seq1  ATCTCAGAAGATTTTTTTTTAATTACATAAAAGGTGGTTTTGTGTTAGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCAGAAGATTTTTTTTTAATTACATAAAAGGTGGTTTTGTGTTAGTC  350

seq1  AAAATTGAATTTATTTCTTCATAAATACTGTTTTTTAGGGAACAAACATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTGAATTTATTTCTTCATAAATACTGTTTTTTAGGGAACAAACATT  400

seq1  GAGGGACAGTAGAAAGTAAGGGTCTGGGTATATAGCTTAGTAGATTCTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGACAGTAGAAAGTAAGGGTCTGGGTATATAGCTTAGTAGATTCTTG  450

seq1  ATACATAAGAATAAATTTGAAAAAGAGGGTATTTTTGGAAAATAAACATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATAAGAATAAATTTGAAAAAGAGGGTATTTTTGGAAAATAAACATA  500

seq1  AGTCATCAGATTTTTCATGTATAAGCCACTGTTATCCACATGCATACACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATCAGATTTTTCATGTATAAGCCACTGTTATCCACATGCATACACT  550

seq1  GGTGAATCCACACTTGTGTGTTTACTGAGTCACACATTTTTATCAAAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAATCCACACTTGTGTGTTTACTGAGTCACACATTTTTATCAAAATT  600

seq1  GCAGTGTTTGGCTTCAGTTAAGCTGTTTGTTAATCGATGTCTCATTGGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGTTTGGCTTCAGTTAAGCTGTTTGTTAATCGATGTCTCATTGGGA  650

seq1  GTAGTGTGGTACTTTGAGTTTATAAGCTAATTTTACTTTGAGTTTGTATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTGTGGTACTTTGAGTTTATAAGCTAATTTTACTTTGAGTTTGTATA  700

seq1  CTTCTTTTTTGTTAATGATCCTTGTAAGAAGAAGATAACAA-TTTTGTTG  749
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CTTCTTTTTTGTTAATGATCCTTGTAAGAAGAAGATAACAATTTTTGTTG  750

seq1  TTTATAGTTTTTATTACATTTA-TTTATTTACTTATTTA-TTTAGATGTA  797
      |||||||||||||||||||||| |||||||||||||||| ||||||||||
seq2  TTTATAGTTTTTATTACATTTATTTTATTTACTTATTTATTTTAGATGTA  800

seq1  TGTGTGTGTAAATGTGCCAAGGA-TTTAGAACACAAAAGTTGTAGATTAA  846
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TGTGTGTGTAAATGTGCCAAGGATTTTAGAACACAAAAGTTGTAGATTAA  850

seq1  ATTATAA--TTTAACAATTTATATCTAGAGG-TTAGAAAAGTTATTGAGG  893
      |||||||  || ||||||||||||||||||| ||||||||||||||||||
seq2  ATTATAAATTTAAACAATTTATATCTAGAGGTTTAGAAAAGTTATTGAGG  900

seq1  CA-TTATGTTGTATACAGAATATGTATTTTAGGGTACTTTTGTTTATTCT  942
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTATGTTGTATACAGAATATGTATTTTAGGGTACTTTTGTTTATTCT  950

seq1  GTTTATTTATTTGTTCACAGGGCAACTTGTGGAAGTCTG-TTTTCTCC-T  990
      ||||||||||||||||||||||||||||||||||||||| |||||||| |
seq2  GTTTATTTATTTGTTCACAGGGCAACTTGTGGAAGTCTGTTTTTCTCCTT  1000

seq1  TCTA-TTTTATGGG-TCCAGGGATCAAATTCATG-TTATTAGGGTTGG-T  1036
      |||| ||||||||| |||||||||||| |||||| |||||| |||||| |
seq2  TCTATTTTTATGGGTTCCAGGGATCAATTTCATGTTTATTAAGGTTGGTT  1050

seq1  AGCAAGAGCCA  1047
      |||||||||||
seq2  AGCAAGAGCCA  1061


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