BAC Information

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BAC

Clone NameB6Ng01-326B01
Chromosome1 (Build37)
Map Location 47,963,850 - 48,071,161
singlet/doubletdoublet
Overlap genenone
Upstream geneEG227061, LOC666869
Downstream geneLOC546734, LOC674566, LOC100041936, LOC666903, LOC666909
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-326B01.bB6Ng01-326B01.g
ACCGA113965GA113966
length9501,103
definitionB6Ng01-326B01.b B6Ng01-326B01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,963,850 - 47,964,794)(48,069,802 - 48,071,161)
sequence
gaattctaaacatgtcatgtagtatgaaaaacagtggcaagcctgaaaga
attttttttttaaattgactaatgtaaatgaaaagaatggtaagaaagga
aacaaagaaatgcaaggcttttatttttaaaaaatgggatacatcagaga
acttatcagtgatataaatgtaaagtttcaaaaataccaaataatatcag
atacattccaggtatttgggagtttgaggcaggagtttatgaggtgtaga
tgaggttgagtccaatttcctacaggacactcaccttaagaaaaaaatcc
aactctcttcatataagaaactttagaatacatgaaatctaagttctagt
aatagacaatgatttaattagactagtaatttagttctgagttgattttg
taatgttgaattttgtttacttgtcaaaatgtgatatggtcaaattgttg
tagatttataatgagcttgaaaataaggcagggttatgcaccctaatttt
cttctgcggctctacaagtagctgagctgaataaacacacaaaaaaaatt
attttatttatttacaattcagctgtcctcctgctcccacagttcctcat
cccattccttctcccccttgcctctgagagagtgctcctccctccccacc
aagcctcccacttctttggggatggactcaagcctctctggatttaggca
catcttctccctctggggcagactaggcagtcctcgcacagagggtctgg
ggttaaggggtaacagggaagggggatcggagaagcctgtatatggtgct
tggttggttggctcagtttcttggaagctccctggggtccctgttagttg
agacttgatggtcttcatataggattgccctcccatttggcttcttcaat
cctttcccttaattcagccatcaaggtctcttgacttcagttcaagggtt


gaattccatcactctatgacagtacatctgaagacattgtcttactgatt
taccgtgaatctatttcacagttacactgttttgcatattctgatccttt
gtgtttatatgatggcaaaagacattgaggatcatattttttgctagaaa
ataatcatttgaaaaataaaatacatcatatactattgcaatggaaagat
gctaagctaagtaagttgcaggagaaaatccatctacatgacaaattttt
tatgctttatttgacatcaaacgttattcttgagatgttgctatgcaaat
gttttttctcttattttatcttctctctttcctaaaatcattctatattt
tatcatgctaattcacaattttgctgtcaaaggggcacatagccagaata
attatatttcctagatgacttaatataaaattgtatcatttccagagtaa
atgaatatattataaatcaatactgtatgacaaaatacataccaaatcca
catgatgagaaagtttaaatcagcaaagaacacagaaatgggaagagaaa
gtccaaatactgccttcacacgggaagtgtcagggctagtgtgaacctta
gttctataaagtgtgctttagcactttaccagtggtttgggaaatacaga
atataatttgcagaagaacattcagtgagttgtcagaaataacattattt
ggtatgatcaatgcatttgtttaaaaactatttgtcattgagttttcatg
aaagggcaaaataccaactgaactaatattcttaaataagcaaattcctt
taagcacaggtaatttcaatgttatttatacaatatgtgcaattaacttt
atctaaaggaaggaacactggcttctatgaatctggtaaggagaaagaat
atatgcagtgactagagattctacattatttctttgaactcttcaaagac
tgcagtcattgactatatttgtacctctgacatacctcttttatattcct
gatcaggagagcttataggaattacagcatcatatagagagacattcaac
actcggactttatctgagtcattgttttgtggtgatctagaaaagcagtc
cca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_47963850_47964794
seq2: B6Ng01-326B01.b_46_995

seq1  GAATTCTAAACATGTCATGTAGTATGAAAAACAGTGGCAAGCCTGAAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAACATGTCATGTAGTATGAAAAACAGTGGCAAGCCTGAAAGA  50

seq1  ATTTTTTTTTTAAATTGACTAATGTAAATGAAAAGAATGGTAAGAAAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTTTTTAAATTGACTAATGTAAATGAAAAGAATGGTAAGAAAGGA  100

seq1  AACAAAGAAATGCAAGGCTTTTATTTTTAAAAAATGGGATACATCAGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAGAAATGCAAGGCTTTTATTTTTAAAAAATGGGATACATCAGAGA  150

seq1  ACTTATCAGTGATATAAATGTAAAGTTTCAAAAATACCAAATAATATCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATCAGTGATATAAATGTAAAGTTTCAAAAATACCAAATAATATCAG  200

seq1  ATACATTCCAGGTATTTGGGAGTTTGAGGCAGGAGTTTATGAGGTGTAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATTCCAGGTATTTGGGAGTTTGAGGCAGGAGTTTATGAGGTGTAGA  250

seq1  TGAGGTTGAGTCCAATTTCCTACAGGACACTCACCTTAAGAAAAAAATCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTTGAGTCCAATTTCCTACAGGACACTCACCTTAAGAAAAAAATCC  300

seq1  AACTCTCTTCATATAAGAAACTTTAGAATACATGAAATCTAAGTTCTAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTCTTCATATAAGAAACTTTAGAATACATGAAATCTAAGTTCTAGT  350

seq1  AATAGACAATGATTTAATTAGACTAGTAATTTAGTTCTGAGTTGATTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGACAATGATTTAATTAGACTAGTAATTTAGTTCTGAGTTGATTTTG  400

seq1  TAATGTTGAATTTTGTTTACTTGTCAAAATGTGATATGGTCAAATTGTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTTGAATTTTGTTTACTTGTCAAAATGTGATATGGTCAAATTGTTG  450

seq1  TAGATTTATAATGAGCTTGAAAATAAGGCAGGGTTATGCACCCTAATTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTTATAATGAGCTTGAAAATAAGGCAGGGTTATGCACCCTAATTTT  500

seq1  CTTCTGCGGCTCTACAAGTAGCTGAGCTGAATAAACACACAAAAAAAATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGCGGCTCTACAAGTAGCTGAGCTGAATAAACACACAAAAAAAATT  550

seq1  ATTTTATTTATTTACAATTCAGCTGTCCTCCTGCTCCCACAGTTCCTCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATTTATTTACAATTCAGCTGTCCTCCTGCTCCCACAGTTCCTCAT  600

seq1  CCCATTCCTTCTCCCCCTTGCCTCTGAGAGAGTGCTCCTCCCTCCCCACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTCCTTCTCCCCCTTGCCTCTGAGAGAGTGCTCCTCCCTCCCCACC  650

seq1  AAGCCTCCCACTTCTTTGGGGATGGACTCAAGCCTCTCTGGATTTAGGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTCCCACTTCTTTGGGGATGGACTCAAGCCTCTCTGGATTTAGGCA  700

seq1  CATCTTCTCCCTCTGGGGCAGACTAGGCAGTCCTCGCACAGAGGGTCTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTCTCCCTCTGGGGCAGACTAGGCAGTCCTCGCACAGAGGGTCTGG  750

seq1  GGTTAAGGGGTAACAGGGAAGGGGGATCGGAGAAGCCTGTATATGGTGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAAGGGGTAACAGGGAAGGGGGATCGGAGAAGCCTGTATATGGTGCT  800

seq1  TGGTTGG-TGGCTCAGTTTC-TGGAAGCTCCCTGGGGTCCCTGTTAGTTG  848
      ||||||| |||||||||||| |||||||||||||||||||||||||||||
seq2  TGGTTGGTTGGCTCAGTTTCTTGGAAGCTCCCTGGGGTCCCTGTTAGTTG  850

seq1  AGAC-TGATGGTCTTCATATAGGATTGCCCTCCCATTTGGCTTCTTCAAT  897
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTGATGGTCTTCATATAGGATTGCCCTCCCATTTGGCTTCTTCAAT  900

seq1  CC-TTCCCCTAATTCAGCCATCAAGGTCTC-TGACTTCAGTTCAAGGGTT  945
      || ||||| ||||||||||||||||||||| |||||||||||||||||||
seq2  CCTTTCCCTTAATTCAGCCATCAAGGTCTCTTGACTTCAGTTCAAGGGTT  950


seq1: chr1_48069802_48071161
seq2: B6Ng01-326B01.g_62_1164 (reverse)

seq1  TGGGACTGCAGCAGCAAGCACACAGAAGAAATTGAATAAAGAGAAAATGA  50
                                                        
seq2  --------------------------------------------------  0

seq1  ATGACACAGGCATGATAATGAACTATCACACATACATGATTAATGAGGGT  100
                                                        
seq2  --------------------------------------------------  0

seq1  GGGTGTACCACTAGGTGGTATGGACTAGAATATATAAAATTCTTCCAAAT  150
                                                        
seq2  --------------------------------------------------  0

seq1  GATAATAAAAAAATGGAAGTAGTGAATTAGGGCAGAAATAAAGTTTGAAA  200
                                                        
seq2  --------------------------------------------------  0

seq1  AGTAATTTTTAAACAGATTAATATACATTTAACTTTCCTTTTTTTTGAGT  250
                                                        
seq2  --------------------------------------------------  0

seq1  ATAGATTGGGAACTGC-TTTCTAGATCACAAC-AAACAATGAACTTCAGA  298
            |||| ||||| |||||||||||| || |||||||||   |||||
seq2  ------TGGG-ACTGCTTTTCTAGATCACCACAAAACAATGA--CTCAGA  41

seq1  TAAAGTCCGAGTGTTTGAATGTCCTCTCTATATTGATGCTGTAATTCCTA  348
      ||||||||||||| |||||||| ||||||||| |||||||||||||||||
seq2  TAAAGTCCGAGTG-TTGAATGT-CTCTCTATA-TGATGCTGTAATTCCTA  88

seq1  TAAGCTCT-CTGATCAGGAATAT-AAAGAGGTATGTCAGAGGTACAAATA  396
      |||||||| |||||||||||||| ||||||||||||||||||||||||||
seq2  TAAGCTCTCCTGATCAGGAATATAAAAGAGGTATGTCAGAGGTACAAATA  138

seq1  TAGTCAATGACTGCAGTCTTTTGAAGAGTTCAAAGAAATAATGTAGAATC  446
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TAGTCAATGACTGCAGTC-TTTGAAGAGTTCAAAGAAATAATGTAGAATC  187

seq1  TCTAGTCACTGCATATATTCTTTCTCC-TACCAGATTCATAGAAGCCAGT  495
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TCTAGTCACTGCATATATTCTTTCTCCTTACCAGATTCATAGAAGCCAGT  237

seq1  GTTCCTTCC-TTAGATAAAGTTAATTGCACATATTGTATAAATAACATTG  544
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTTCCTTTAGATAAAGTTAATTGCACATATTGTATAAATAACATTG  287

seq1  AAATTACCTGTGCTTAAAGGAATTTGCTTATTTAAGAATATTAGTTCAGT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTACCTGTGCTTAAAGGAATTTGCTTATTTAAGAATATTAGTTCAGT  337

seq1  TGGTATTTTGCCCTTTCATGAAAACTCAATGACAAATAGTTTTTAAACAA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTATTTTGCCCTTTCATGAAAACTCAATGACAAATAGTTTTTAAACAA  387

seq1  ATGCATTGATCATACCAAATAATGTTATTTCTGACAACTCACTGAATGTT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATTGATCATACCAAATAATGTTATTTCTGACAACTCACTGAATGTT  437

seq1  CTTCTGCAAATTATATTCTGTATTTCCCAAACCACTGGTAAAGTGCTAAA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGCAAATTATATTCTGTATTTCCCAAACCACTGGTAAAGTGCTAAA  487

seq1  GCACACTTTATAGAACTAAGGTTCACACTAGCCCTGACACTTCCCGTGTG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACTTTATAGAACTAAGGTTCACACTAGCCCTGACACTTCCCGTGTG  537

seq1  AAGGCAGTATTTGGACTTTCTCTTCCCATTTCTGTGTTCTTTGCTGATTT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAGTATTTGGACTTTCTCTTCCCATTTCTGTGTTCTTTGCTGATTT  587

seq1  AAACTTTCTCATCATGTGGATTTGGTATGTATTTTGTCATACAGTATTGA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTTCTCATCATGTGGATTTGGTATGTATTTTGTCATACAGTATTGA  637

seq1  TTTATAATATATTCATTTACTCTGGAAATGATACAATTTTATATTAAGTC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAATATATTCATTTACTCTGGAAATGATACAATTTTATATTAAGTC  687

seq1  ATCTAGGAAATATAATTATTCTGGCTATGTGCCCCTTTGACAGCAAAATT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAGGAAATATAATTATTCTGGCTATGTGCCCCTTTGACAGCAAAATT  737

seq1  GTGAATTAGCATGATAAAATATAGAATGATTTTAGGAAAGAGAGAAGATA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATTAGCATGATAAAATATAGAATGATTTTAGGAAAGAGAGAAGATA  787

seq1  AAATAAGAGAAAAAACATTTGCATAGCAACATCTCAAGAATAACGTTTGA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAGAGAAAAAACATTTGCATAGCAACATCTCAAGAATAACGTTTGA  837

seq1  TGTCAAATAAAGCATAAAAAATTTGTCATGTAGATGGATTTTCTCCTGCA  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAAATAAAGCATAAAAAATTTGTCATGTAGATGGATTTTCTCCTGCA  887

seq1  ACTTACTTAGCTTAGCATCTTTCCATTGCAATAGTATATGATGTATTTTA  1194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTACTTAGCTTAGCATCTTTCCATTGCAATAGTATATGATGTATTTTA  937

seq1  TTTTTCAAATGATTATTTTCTAGCAAAAAATATGATCCTCAATGTCTTTT  1244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCAAATGATTATTTTCTAGCAAAAAATATGATCCTCAATGTCTTTT  987

seq1  GCCATCATATAAACACAAAGGATCAGAATATGCAAAACAGTGTAACTGTG  1294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATCATATAAACACAAAGGATCAGAATATGCAAAACAGTGTAACTGTG  1037

seq1  AAATAGATTCACGGTAAATCAGTAAGACAATGTCTTCAGATGTACTGTCA  1344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGATTCACGGTAAATCAGTAAGACAATGTCTTCAGATGTACTGTCA  1087

seq1  TAGAGTGATGGAATTC  1360
      ||||||||||||||||
seq2  TAGAGTGATGGAATTC  1103


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