BAC Information

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BAC

Clone NameB6Ng01-326H12
Chromosome1 (Build37)
Map Location 18,256,442 - 18,305,965
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC383495, Rbm6-ps1, Ppia-ps1_125.1, Pi15, Crispld1, LOC665564, LOC100040126, Crisp4, EG574082, EG654460, Defb17
Downstream geneLOC383499, EG435611, LOC100040189, Tcfap2d, LOC100040413, Tcfap2b, LOC100040198
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-326H12.bB6Ng01-326H12.g
ACCGA114271GA114272
length6251,140
definitionB6Ng01-326H12.b B6Ng01-326H12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,256,442 - 18,257,066)(18,304,841 - 18,305,965)
sequence
gaattcatcatgttgaacagaactagtccattgctatttgattatgtgct
ttatttttacttcataactcactgggctttatctttaatttataaatctc
tgtgctttaataaatgctggagacttaactctctcttagtgttctgtgct
tcaacagtgctgaaaacttaactctttatgcttaaataaacattggtctc
ttactctataaatctcttgttatttgtgcttatgtaagtgctaaagtttg
gcaaattaacaaatcgaagaatttattcctagagctcctttccctggcag
atcatctaggagtcccttgctggctagacaagaggttcagaactcactaa
tttcttttgaaccagaaagaaaaggggtcactcacacagaacatatacat
tgggtaaagtggtaaacagccacactgtctttctttattgttttcagcta
cttatagtttttagagaaaaagttcactatgtaagaaagaattacctcat
agataacaagttcagagcactatttcataccgtaagttcattatatattc
aaagcaacagcttttacactgctttgcattatcatagtgcacacctgtga
ttttatctttggacgtggatgtttt

gaattcagagccagccagagaatgaggaggcagaagattagaaaagttaa
agaccaagcagagcaaaaaattcagagagaaaagctacaatgaatcagtc
agcttggagaggaatttgagccagaagcactcagttaaaccagccaagag
agttcagaaaaaaactagaaaaggtgtgtttattcagcagtaagtctcag
aggctgaaaacaatctagccctagattaaattctaaagacgctttaagct
gccaggtctaggtctacgttaccagtcagagggaggcagtaagccttgaa
tatgacaattacatccgacaaataaaagttacttttacagttcccatatt
gcaaaaatcaaagtgaggtgtagataactagtagtctgtctctctgtctc
tctcagtctctctctttctcttgcttgctctgtgcgtgtgtttgtcatat
atatgttaatgtcatatatatatatatatatatatatatatatatatata
tatatatatagccaaacgacaccaattaacactgatggcataacatagtt
attgcatgtaacaccagtaatgttaagtgaataaattactcccaagatat
tacacactggagatatccttttatcaaagtaaattattgtagaaaatgaa
tgaagtaccccatgtgtcctttacagattagtcttttaatgtgacttaat
ttactctgtaaaattaaaagcagctggtcatttcaaattcatttaaagga
acaaggttgtattcaccttaattgtagaagtggaagataaaaatcatttg
agtgtcttttattgatataagcatttttttcctaatttgaagagtggaaa
tttgaagctgttgaaaaaaaggctggaaaaaatacaagaagaaagaacag
atgtgacaaatatgtgtgttgttccacatattttttcggattcagtattc
tgaaatgtgtagtatttatagcctggcttcatcctcttctttttggcact
tgtgagaacaaagtcaatggatgctcagagcaaatatggcctccttcgag
tcattctgatgagcgagtccagtgatcttcccttgaggaagaacatgttc
ataggagttcctcaatgaaatgttttctgaacagaaatct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_18256442_18257066
seq2: B6Ng01-326H12.b_46_670

seq1  GAATTCATCATGTTGAACAGAACTAGTCCATTGCTATTTGATTATGTGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCATGTTGAACAGAACTAGTCCATTGCTATTTGATTATGTGCT  50

seq1  TTATTTTTACTTCATAACTCACTGGGCTTTATCTTTAATTTATAAATCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTTACTTCATAACTCACTGGGCTTTATCTTTAATTTATAAATCTC  100

seq1  TGTGCTTTAATAAATGCTGGAGACTTAACTCTCTCTTAGTGTTCTGTGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTTTAATAAATGCTGGAGACTTAACTCTCTCTTAGTGTTCTGTGCT  150

seq1  TCAACAGTGCTGAAAACTTAACTCTTTATGCTTAAATAAACATTGGTCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACAGTGCTGAAAACTTAACTCTTTATGCTTAAATAAACATTGGTCTC  200

seq1  TTACTCTATAAATCTCTTGTTATTTGTGCTTATGTAAGTGCTAAAGTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTCTATAAATCTCTTGTTATTTGTGCTTATGTAAGTGCTAAAGTTTG  250

seq1  GCAAATTAACAAATCGAAGAATTTATTCCTAGAGCTCCTTTCCCTGGCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATTAACAAATCGAAGAATTTATTCCTAGAGCTCCTTTCCCTGGCAG  300

seq1  ATCATCTAGGAGTCCCTTGCTGGCTAGACAAGAGGTTCAGAACTCACTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCTAGGAGTCCCTTGCTGGCTAGACAAGAGGTTCAGAACTCACTAA  350

seq1  TTTCTTTTGAACCAGAAAGAAAAGGGGTCACTCACACAGAACATATACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTTGAACCAGAAAGAAAAGGGGTCACTCACACAGAACATATACAT  400

seq1  TGGGTAAAGTGGTAAACAGCCACACTGTCTTTCTTTATTGTTTTCAGCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTAAAGTGGTAAACAGCCACACTGTCTTTCTTTATTGTTTTCAGCTA  450

seq1  CTTATAGTTTTTAGAGAAAAAGTTCACTATGTAAGAAAGAATTACCTCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATAGTTTTTAGAGAAAAAGTTCACTATGTAAGAAAGAATTACCTCAT  500

seq1  AGATAACAAGTTCAGAGCACTATTTCATACCGTAAGTTCATTATATATTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAACAAGTTCAGAGCACTATTTCATACCGTAAGTTCATTATATATTC  550

seq1  AAAGCAACAGCTTTTACACTGCTTTGCATTATCATAGTGCACACCTGTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAACAGCTTTTACACTGCTTTGCATTATCATAGTGCACACCTGTGA  600

seq1  TTTTATCTTTGGACGTGGATGTTTT  625
      |||||||||||||||||||||||||
seq2  TTTTATCTTTGGACGTGGATGTTTT  625


seq1: chr1_18304841_18305965
seq2: B6Ng01-326H12.g_66_1205 (reverse)

seq1  AGATTTCTGTTCAGAACA-ATTTCATTGAG--ACT-CTATGAACATGTTC  46
      |||||||||||||||| | |||||||||||  ||| ||||||||||||||
seq2  AGATTTCTGTTCAGAAAACATTTCATTGAGGAACTCCTATGAACATGTTC  50

seq1  TCCTTCAA-GGAAGATCACCTGGACTCGCTTCATCAGAATGACTCGA--G  93
      | | |||| ||||||||| |||||||||| |||||||||||||||||  |
seq2  TTCCTCAAGGGAAGATCA-CTGGACTCGC-TCATCAGAATGACTCGAAGG  98

seq1  AGCCATTATTTGCTCTGAGCATCCATTGACTTTGTTCTCACAAGTGCC-A  142
      || |  |||||||||||||||||||||||||||||||||||||||||| |
seq2  AGGCCATATTTGCTCTGAGCATCCATTGACTTTGTTCTCACAAGTGCCAA  148

seq1  AAAGAAGAGGATGAAGCCAGGCTATAAATACTACACATTTCAGAATACTG  192
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAGAGGATGAAGCCAGGCTATAAATACTACACATTTCAGAATACTG  198

seq1  AATCCG-AAAAATATGT-GAACAACACACATATTTGTCACATCTGTTCTT  240
      |||||| |||||||||| ||||||||||||||||||||||||||||||||
seq2  AATCCGAAAAAATATGTGGAACAACACACATATTTGTCACATCTGTTCTT  248

seq1  TCTTTCTTGTATTTTTTCCAGCCTTTTTTTCAACAGCTTCAAA-TTCCAC  289
      || |||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TC-TTCTTGTATTTTTTCCAGCCTTTTTTTCAACAGCTTCAAATTTCCAC  297

seq1  TCTTCAAATTAGG-AAAAAATGCTTATATCAATAAAAGACACTCAAATGA  338
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TCTTCAAATTAGGAAAAAAATGCTTATATCAATAAAAGACACTCAAATGA  347

seq1  TTTTTATCTTCCACTTCTACAATTAAGGTGAATACAACCTTGTTCCTTTA  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATCTTCCACTTCTACAATTAAGGTGAATACAACCTTGTTCCTTTA  397

seq1  AATGAATTTGAAATGACCAGCTGCTTTTAATTTTACAGAGTAAATTAAGT  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAATTTGAAATGACCAGCTGCTTTTAATTTTACAGAGTAAATTAAGT  447

seq1  CACATTAAAAGACTAATCTGTAAAGGACACATGGGGTACTTCATTCATTT  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTAAAAGACTAATCTGTAAAGGACACATGGGGTACTTCATTCATTT  497

seq1  TCTACAATAATTTACTTTGATAAAAGGATATCTCCAGTGTGTAATATCTT  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACAATAATTTACTTTGATAAAAGGATATCTCCAGTGTGTAATATCTT  547

seq1  GGGAGTAATTTATTCACTTAACATTACTGGTGTTACATGCAATAACTATG  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGTAATTTATTCACTTAACATTACTGGTGTTACATGCAATAACTATG  597

seq1  TTATGCCATCAGTGTTAATTGGTGTCGTTTGGC------TATATATATAT  632
      |||||||||||||||||||||||||||||||||      |||||||||||
seq2  TTATGCCATCAGTGTTAATTGGTGTCGTTTGGCTATATATATATATATAT  647

seq1  ATATATATATATATATATATATATATATATGACATTAACATATATATGAC  682
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATATATATATATATATATATATGACATTAACATATATATGAC  697

seq1  AAACACACGCACAGAGCAAGCAAGAGAAAGAGAGAGACTGAGAGAGACAG  732
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACACGCACAGAGCAAGCAAGAGAAAGAGAGAGACTGAGAGAGACAG  747

seq1  AGAGACAGACTACTAGTTATCTACACCTCACTTTGATTTTTGCAATATGG  782
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACAGACTACTAGTTATCTACACCTCACTTTGATTTTTGCAATATGG  797

seq1  GAACTGTAAAAGTAACTTTTATTTGTCGGATGTAATTGTCATATTCAAGG  832
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGTAAAAGTAACTTTTATTTGTCGGATGTAATTGTCATATTCAAGG  847

seq1  CTTACTGCCTCCCTCTGACTGGTAACGTAGACCTAGACCTGGCAGCTTAA  882
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTGCCTCCCTCTGACTGGTAACGTAGACCTAGACCTGGCAGCTTAA  897

seq1  AGCGTCTTTAGAATTTAATCTAGGGCTAGATTGTTTTCAGCCTCTGAGAC  932
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGTCTTTAGAATTTAATCTAGGGCTAGATTGTTTTCAGCCTCTGAGAC  947

seq1  TTACTGCTGAATAAACACACCTTTTCTAGTTTTTTTCTGAACTCTCTTGG  982
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGCTGAATAAACACACCTTTTCTAGTTTTTTTCTGAACTCTCTTGG  997

seq1  CTGGTTTAACTGAGTGCTTCTGGCTCAAATTCCTCTCCAAGCTGACTGAT  1032
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTTAACTGAGTGCTTCTGGCTCAAATTCCTCTCCAAGCTGACTGAT  1047

seq1  TCATTGTAGCTTTTCTCTCTGAATTTTTTGCTCTGCTTGGTCTTTAACTT  1082
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGTAGCTTTTCTCTCTGAATTTTTTGCTCTGCTTGGTCTTTAACTT  1097

seq1  TTCTAATCTTCTGCCTCCTCATTCTCTGGCTGGCTCTGAATTC  1125
      |||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAATCTTCTGCCTCCTCATTCTCTGGCTGGCTCTGAATTC  1140


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