BAC Information

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BAC

Clone NameB6Ng01-326N20
Chromosome1 (Build37)
Map Location 170,797,316 - 170,907,906
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039879, Pbx1
Downstream geneEG383613, Nuf2, Rgs5, Rgs4, LOC100039960, 1700084C01Rik, Hsd17b7, Ddr2
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-326N20.bB6Ng01-326N20.g
ACCGA114564GA114565
length1,159928
definitionB6Ng01-326N20.b B6Ng01-326N20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(170,906,735 - 170,907,906)(170,797,316 - 170,798,235)
sequence
gaattcaagccacatgggaatcttaaatgattctggtagctccttaaaat
gcttaaaaagtgaagtccattttaacagtctgttgtatgtgagctattgc
ggtatttccatagtgcccttgaactctcaagtgtgttttatacttctatt
ggcaggtcatttgaatttagggccgtcatatttcaagtgtctggtacctg
acttctgcattgggcagtccagaaagaggataactgagaagtttctagaa
taaggccgtacgtaatgtaacacttatatttcaagggaaaagaaaaaaaa
acagagcagaaaggccagtgaacacaagaggattacaaccaaattaggaa
gcttaaggaagtagggtgccgaggctgaagagatggctcagcagttaaga
gcactgactgcatttccagaggtcctgagttcaattcccagcaatcacat
ggtggctctcaaccatctgtaatgggatctgatgccctcttctggtatat
ctgacaggtacactgtattcatataaataaaataaatgaatctttaaaaa
aaaggaagtagggtgtctagatcatggggataagggggacatgataaggc
aaggaggtacccaggggcttaagaattagggatctgattattaagggatc
ttcaattcaattctatacaacttaggaacctactagaaggtattaaatgg
aggagaagtacaatcacattattcttcaaataaaactactctagttggta
cattaccttatagaatgcaatagatcaaggacacaggccagttatgaggt
tctgtcaatgctggagaatctaggaaaacagacttgcatatgtatgtaac
atttctggggaactgccagtacataaaatcatatataaagcatctgacac
ggtacctgggcagatgctaagcattcaaaaattcctgtgcgtgattatta
gatattaaaatctaaaagcttttcctgtctgagaaaagcataattttgga
agcagacaaaataacagctaggtaactttgggtttctttatttagaaaga
acgcagactcccttgacttcttcacatgagattactgccaatgtcagtga
ctgtctacctaggaagacaaagtataagtacctaggacttttaccatcca
gaattttct

gaattcatcagggaaattggttttcctaggtttgggattacagacacaca
gcatgggagcaggccagtttactgatgccccaattaaaactgatcaggtg
agatggtttctgtgaagaggtgtttttgaaaaggatgcaggcttttcttt
gtcatttggttctttctttaagcacacaagtttgagaaagagcaaggggg
acaaaactggggggggggattctattaaactctgcaggctaaggaaatgc
ttgtttgaacattatttgtgaaggagtaataccaggtcactaagatatca
ggtaaggttatatagtgaccgtgagtttaaaggcagtgcattatgaaaag
gccataggaccccaaaacaattttacagtaacatttcaaagatggaagga
agaaaacagaaaagatggctgtataacaaaatcattgccaagccaaatta
atgtgtcaggtgtgcttgattcattttgaagctcacagcatatcattcag
aatcatggggccacgttggcatgctttcataaggcttcctggtttgaagg
aagtagaacagatggatactaaggtcactcttagctctcacctttctgtg
tttagggcttgtaaattctctaagaggcagacagggaggctccatgactc
ccatcctccagctgctgctggacatctacttgaagcccagtgtctggatc
cattttcctattggtgctgagtgagaggagtgaagcgactctatataagg
ttctacattgctgacctactgtgtgcctgaatggctttcacccctgctgc
atgcaattcattcctcacatcctctaagacagattaatatttatctgaaa
aatggagaacagggtcagtcgttaaatgattgcctacatggcaggaagaa
tgtgtgtctgagtctcaaaacccacata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_170906735_170907906
seq2: B6Ng01-326N20.b_48_1206 (reverse)

seq1  AGAAA--TCTGGATGGTAAAAGTTCCCTGGGTTCCCTAATACTTTTGTCT  48
      |||||  ||||||||||||||||  ||| |||   || |||| |||||| 
seq2  AGAAAATTCTGGATGGTAAAAGT--CCTAGGT--ACTTATAC-TTTGTC-  44

seq1  TTCCTA-GTAGGAACAAGTCACCTGACATT-GCAGTAAATCCTTCAATGT  96
      |||||| ||||  || ||||| |||||||| ||||| ||||  || ||||
seq2  TTCCTAGGTAG--AC-AGTCA-CTGACATTGGCAGT-AATC--TC-ATGT  86

seq1  GAAGAAGTC-AGGGAGTCTGCGTTCTTTCCTTAAATAAAGAAACCCAAAG  145
      ||||||||| |||||||||||||||||||  |||||||||||||||||||
seq2  GAAGAAGTCAAGGGAGTCTGCGTTCTTTC--TAAATAAAGAAACCCAAAG  134

seq1  TTACCTAGCTGTATTTTTGTCTGCTTTCCAAAATTATGCTTTTCCTCAGA  195
      ||||||||||||  |||||||||| |||||||||||||||||| ||||||
seq2  TTACCTAGCTGTTATTTTGTCTGC-TTCCAAAATTATGCTTTT-CTCAGA  182

seq1  CAGGAAAAGCTTTTAGATTTTAATATCTTAATAATCACGCACAGGAATTT  245
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CAGGAAAAGCTTTTAGATTTTAATATC-TAATAATCACGCACAGGAATTT  231

seq1  TTGAATGCTTAGCATCTG-CCAGGTACCGTGTCAGATGCTTTATATATGA  294
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TTGAATGCTTAGCATCTGCCCAGGTACCGTGTCAGATGCTTTATATATGA  281

seq1  TTTTATGTACTGGCAGTTCCCCAGAAATGTTACATACATATGCAAGTCTG  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATGTACTGGCAGTTCCCCAGAAATGTTACATACATATGCAAGTCTG  331

seq1  TTTTCCTAGATTCTCCAGCATTGACAGAACCTCATAACTGGCCTGTGTCC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTAGATTCTCCAGCATTGACAGAACCTCATAACTGGCCTGTGTCC  381

seq1  TTGATCTATTGCATTCTATAAGGTAATGTACCAACTAGAGTAGTTTTATT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATCTATTGCATTCTATAAGGTAATGTACCAACTAGAGTAGTTTTATT  431

seq1  TGAAGAATAATGTGATTGTACTTCTCCTCCATTTAATACCTTCTAGTAGG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAATAATGTGATTGTACTTCTCCTCCATTTAATACCTTCTAGTAGG  481

seq1  TTCCTAAGTTGTATAGAATTGAATTGAAGATCCCTTAATAATCAGATCCC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTAAGTTGTATAGAATTGAATTGAAGATCCCTTAATAATCAGATCCC  531

seq1  TAATTCTTAAGCCCCTGGGTACCTCCTTGCCTTATCATGTCCCCCTTATC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCTTAAGCCCCTGGGTACCTCCTTGCCTTATCATGTCCCCCTTATC  581

seq1  CCCATGATCTAGACACCCTACTTCCTTTTTTTTAAAGATTCATTTATTTT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGATCTAGACACCCTACTTCCTTTTTTTTAAAGATTCATTTATTTT  631

seq1  ATTTATATGAATACAGTGTACCTGTCAGATATACCAGAAGAGGGCATCAG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATATGAATACAGTGTACCTGTCAGATATACCAGAAGAGGGCATCAG  681

seq1  ATCCCATTACAGATGGTTGAGAGCCACCATGTGATTGCTGGGAATTGAAC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCATTACAGATGGTTGAGAGCCACCATGTGATTGCTGGGAATTGAAC  731

seq1  TCAGGACCTCTGGAAATGCAGTCAGTGCTCTTAACTGCTGAGCCATCTCT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGACCTCTGGAAATGCAGTCAGTGCTCTTAACTGCTGAGCCATCTCT  781

seq1  TCAGCCTCGGCACCCTACTTCCTTAAGCTTCCTAATTTGGTTGTAATCCT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCTCGGCACCCTACTTCCTTAAGCTTCCTAATTTGGTTGTAATCCT  831

seq1  CTTGTGTTCACTGGCCTTTCTGCTCTGTTTTTTTTTCTTTTCCCTTGAAA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGTTCACTGGCCTTTCTGCTCTGTTTTTTTTTCTTTTCCCTTGAAA  881

seq1  TATAAGTGTTACATTACGTACGGCCTTATTCTAGAAACTTCTCAGTTATC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGTGTTACATTACGTACGGCCTTATTCTAGAAACTTCTCAGTTATC  931

seq1  CTCTTTCTGGACTGCCCAATGCAGAAGTCAGGTACCAGACACTTGAAATA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTCTGGACTGCCCAATGCAGAAGTCAGGTACCAGACACTTGAAATA  981

seq1  TGACGGCCCTAAATTCAAATGACCTGCCAATAGAAGTATAAAACACACTT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACGGCCCTAAATTCAAATGACCTGCCAATAGAAGTATAAAACACACTT  1031

seq1  GAGAGTTCAAGGGCACTATGGAAATACCGCAATAGCTCACATACAACAGA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTTCAAGGGCACTATGGAAATACCGCAATAGCTCACATACAACAGA  1081

seq1  CTGTTAAAATGGACTTCACTTTTTAAGCATTTTAAGGAGCTACCAGAATC  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTAAAATGGACTTCACTTTTTAAGCATTTTAAGGAGCTACCAGAATC  1131

seq1  ATTTAAGATTCCCATGTGGCTTGAATTC  1172
      ||||||||||||||||||||||||||||
seq2  ATTTAAGATTCCCATGTGGCTTGAATTC  1159


seq1: chr1_170797316_170798235
seq2: B6Ng01-326N20.g_68_995

seq1  GAATTCATCAGGGAAATTGGTTTTCCTAGGTTTGGGATTACAGACACACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCAGGGAAATTGGTTTTCCTAGGTTTGGGATTACAGACACACA  50

seq1  GCATGGGAGCAGGCCAGTTTACTGATGCCCCAATTAAAACTGATCAGGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGGAGCAGGCCAGTTTACTGATGCCCCAATTAAAACTGATCAGGTG  100

seq1  AGATGGTTTCTGTGAAGAGGTGTTTTTGAAAAGGATGCAGGCTTTTCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGTTTCTGTGAAGAGGTGTTTTTGAAAAGGATGCAGGCTTTTCTTT  150

seq1  GTCATTTGGTTCTTTCTTTAAGCACACAAGTTTGAGAAAGAGCAAGGGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTTGGTTCTTTCTTTAAGCACACAAGTTTGAGAAAGAGCAAGGGGG  200

seq1  ACAAAACTGGGGGGGGGGATTCTATTAAACTCTGCAGGCTAAGGAAATGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAACTGGGGGGGGGGATTCTATTAAACTCTGCAGGCTAAGGAAATGC  250

seq1  TTGTTTGAACATTATTTGTGAAGGAGTAATACCAGGTCACTAAGATATCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGAACATTATTTGTGAAGGAGTAATACCAGGTCACTAAGATATCA  300

seq1  GGTAAGGTTATATAGTGACCGTGAGTTTAAAGGCAGTGCATTATGAAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAGGTTATATAGTGACCGTGAGTTTAAAGGCAGTGCATTATGAAAAG  350

seq1  GCCATAGGACCCCAAAACAATTTTACAGTAACATTTCAAAGATGGAAGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATAGGACCCCAAAACAATTTTACAGTAACATTTCAAAGATGGAAGGA  400

seq1  AGAAAACAGAAAAGATGGCTGTATAACAAAATCATTGCCAAGCCAAATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAACAGAAAAGATGGCTGTATAACAAAATCATTGCCAAGCCAAATTA  450

seq1  ATGTGTCAGGTGTGCTTGATTCATTTTGAAGCTCACAGCATATCATTCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTCAGGTGTGCTTGATTCATTTTGAAGCTCACAGCATATCATTCAG  500

seq1  AATCATGGGGCCACGTTGGCATGCTTTCATAAGGCTTCCTGGTTTGAAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATGGGGCCACGTTGGCATGCTTTCATAAGGCTTCCTGGTTTGAAGG  550

seq1  AAGTAGAACAGATGGATACTAAGGTCACTCTTAGCTCTCACCTTTCTGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGAACAGATGGATACTAAGGTCACTCTTAGCTCTCACCTTTCTGTG  600

seq1  TTTAGGGCTTGTAAATTCTCTAAGAGGCAGACA-GGAGGCTCCATGACTC  649
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TTTAGGGCTTGTAAATTCTCTAAGAGGCAGACAGGGAGGCTCCATGACTC  650

seq1  CCATCCTCCAGCTGCTGCTGGACATCTACTTGAAGCCCAGTGTCTGGATC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCTCCAGCTGCTGCTGGACATCTACTTGAAGCCCAGTGTCTGGATC  700

seq1  CA-TTTCCTATTGGTGCTGAGTGAGAGGAGTGAAGCGACTCTATATAAGG  748
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTCCTATTGGTGCTGAGTGAGAGGAGTGAAGCGACTCTATATAAGG  750

seq1  TTCTACA-TGCTGACCTACTGTGTGCCTGAATGGCTTTCA-CCCTGCTGC  796
      ||||||| |||||||||||||||||||||||||||||||| |||||||||
seq2  TTCTACATTGCTGACCTACTGTGTGCCTGAATGGCTTTCACCCCTGCTGC  800

seq1  ATGCAA-TCA-TCCTCACATCC-CTAAGACAGATTAATATTTATCTG-AA  842
      |||||| ||| ||||||||||| |||||||||||||||||||||||| ||
seq2  ATGCAATTCATTCCTCACATCCTCTAAGACAGATTAATATTTATCTGAAA  850

seq1  AATGGAGAACAGGGTCAGTCGTTAAAATGATTGCCTTACAT-GCAGG-AG  890
      ||||||||||||||||||||||| ||||||||||| ||||| ||||| ||
seq2  AATGGAGAACAGGGTCAGTCGTT-AAATGATTGCC-TACATGGCAGGAAG  898

seq1  GATGTGTGTCTGAGTCTCAGAACCCACATA  920
       |||||||||||||||||| ||||||||||
seq2  AATGTGTGTCTGAGTCTCAAAACCCACATA  928


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