BAC Information

Click to search

BAC

Clone NameB6Ng01-327G21
Chromosome1 (Build37)
Map Location 116,518,463 - 116,645,816
singlet/doubletdoublet
Overlap genenone
Upstream genenone
Downstream geneLOC227506, Cntnap5a
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-327G21.bB6Ng01-327G21.g
ACCGA114981GA114982
length1,0001,164
definitionB6Ng01-327G21.b B6Ng01-327G21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(116,644,820 - 116,645,816)(116,518,463 - 116,519,619)
sequence
gaattccatatgtccaatgtcatcctctttaactagaggattcaagctaa
taagttgaatactaccaaaagattctattgcataatatttgtgggggtta
tatatcatgaaaagcaaacccattttcatgttccttaaataagccatgca
catctcttactctgtgtctctgtgtctgtgtctgtctctctgtctctctg
tctcgctgtctctctgtctctctgtctctctgtctctctctctgtctctc
tctctgtctctctctctctctttctctctctctctctctctccctctctc
tctctctctctctctctctctcacacacacacacacacacacacacacac
acacacacacactacattaataaaagaacaggatggttaagataaaattt
atttttaacatagttcctccctatgtcagaagtatccatttgtactatgg
atgctactttttattgcaactcaatcttgaattgcatcaaaagtgaaatt
aatacaatttttttctatcatgactctcagtacttagttggtaacatgaa
gccaataatttctcttttccattatctgtttgaaacagtatgtgatcaat
agggcttttctaaaccaatgactcactgaggagaggaagaatatcccttg
cttttgtttttattttattttattttttttgctttttgttttgttttctc
ctagaagcacataaaaagaaagattgatccaatattactaatttactcat
accttctctttctcatatgtcttccattctttcccaaatttatacttgta
gggtttcacactcactttgctttttatgtaaaaaaaaaattcagagagaa
aagtctaggaaaatattaagattttattttgtgtaactattctttgtata
tatgtttctatatattaactgaaggatgaacccatgcattctgtattgac
atcaccaggaaattgtcgcatggataatttttatggatgaaacttagcaa

gaattctcctataaaggggcatagaaccatcacaagacctagggcctctc
ttcctattgatgaccgactaggtcatccttgtctccatatatagctagag
tcacatgtcttaccatatattttcttcgattggtggtttacttccaagga
gcactgggggtactgattagttcatatttttgttcctcctatggggttta
attaattagattcaaccagtagaacacattttgtttgaaacaatacccca
atattgtctaatgcatattatggtaattttaaagttaaacaataataaaa
aacaattaaataaaactaaaaactttcttataaaattgagactgcaactg
gtctcaaatttattttttaaatgtaatttaaaaagaaaaaaatccataca
tgatcccctaaatgatccttatgctggactgtatcattcttggttataga
ttcctggacactgatatcaacagccctaaggaacgatcttaagaaaattt
atctaacgcattaaaaacaagaattcaggagtctaaaaatcattaaattc
taaggactagagaaatatctcacctgttaagaactctgtatatttgttca
gaggcagcacattcaaattaccagaatgtatatggcatctcacaaccatc
tttacatccagttcaggggatctggtgccttcttcttggcctgtgtgagc
acatacatacatacatacatacatacatacatgcatgcaaaacattcata
aacttacaattataaaataagacttcaaaatgatttaagttttaatggaa
ttaattatatttgttaaagatatttcatctaatttgaaatattttcccaa
taattgtttttttaaatagaatgatcaatatctgcatgagcaaaatacat
tttagatattgctttcaatcaaacattatgcagtcatcgtaggttattcc
tttaaaaataatgtaaacaagtgggaatactttatttatttgctaattat
gtgggttttaagtaagaattttccctaagagtagactctggagaagattt
gtatatataaaaagtggtcatgaagctggtggagaataactcagtaagat
tagctaccaaccttaaatggctatgtaagaatcaagcttgataatacagt
ttactataaaatct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_116644820_116645816
seq2: B6Ng01-327G21.b_48_1047 (reverse)

seq1  TTGCT-AGTTTCAT-CATAAAA--TTTCCATGCGAC-ATTTCCT-GTGAT  44
      ||||| |||||||| |||||||  | |||||||||| ||||||| |||||
seq2  TTGCTAAGTTTCATCCATAAAAATTATCCATGCGACAATTTCCTGGTGAT  50

seq1  GTTCATTCAGATTGCATGGGGTTCATCCTTCAGTTAATATATAAGAAACA  94
      ||  || |||| ||||| |||||||||||||||||||||||| |||||||
seq2  GTCAATACAGAATGCAT-GGGTTCATCCTTCAGTTAATATAT-AGAAACA  98

seq1  TATATACAAAGAATAGTTACACAAAATAAAATCTTAATATTTTCCTAGAC  144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATACAAAGAATAGTTACACAAAATAAAATCTTAATATTTTCCTAGAC  148

seq1  TTTTTCTCTCTGAATTTTTTTTTTACATAAAAAGC-AAGTGAGTGTGAAA  193
       |||||||||||||||||||||||||||||||||| ||||||||||| ||
seq2  -TTTTCTCTCTGAATTTTTTTTTTACATAAAAAGCAAAGTGAGTGTG-AA  196

seq1  ACCCTACAAGTATAAATTTGGGAAAGAATGGAAGACATATGAGAAAGAGA  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTACAAGTATAAATTTGGGAAAGAATGGAAGACATATGAGAAAGAGA  246

seq1  AGGTATGAGTAAATTAGTAATATTGGATCAATCTTTCTTTTTATGTGCTT  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTATGAGTAAATTAGTAATATTGGATCAATCTTTCTTTTTATGTGCTT  296

seq1  CTAGGAGAAAACAAAACAAAAAGCAAAAAAAATAAAATAAAATAAAAACA  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGAGAAAACAAAACAAAAAGCAAAAAAAATAAAATAAAATAAAAACA  346

seq1  AAAGCAAGGGATATTCTTCCTCTCCTCAGTGAGTCATTGGTTTAGAAAAG  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAAGGGATATTCTTCCTCTCCTCAGTGAGTCATTGGTTTAGAAAAG  396

seq1  CCCTATTGATCACATACTGTTTCAAACAGATAATGGAAAAGAGAAATTAT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTATTGATCACATACTGTTTCAAACAGATAATGGAAAAGAGAAATTAT  446

seq1  TGGCTTCATGTTACCAACTAAGTACTGAGAGTCATGATAGAAAAAAATTG  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTCATGTTACCAACTAAGTACTGAGAGTCATGATAGAAAAAAATTG  496

seq1  TATTAATTTCACTTTTGATGCAATTCAAGATTGAGTTGCAATAAAAAGTA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAATTTCACTTTTGATGCAATTCAAGATTGAGTTGCAATAAAAAGTA  546

seq1  GCATCCATAGTACAAATGGATACTTCTGACATAGGGAGGAACTATGTTAA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCCATAGTACAAATGGATACTTCTGACATAGGGAGGAACTATGTTAA  596

seq1  AAATAAATTTTATCTTAACCATCCTGTTCTTTTATTAATGTAGTGTGTGT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAATTTTATCTTAACCATCCTGTTCTTTTATTAATGTAGTGTGTGT  646

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGA  696

seq1  GAGAGAGAGAGGGAGAGAGAGAGAGAGAGAGAAAGAGAGAGAGAGAGACA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGGGAGAGAGAGAGAGAGAGAGAAAGAGAGAGAGAGAGACA  746

seq1  GAGAGAGAGACAGAGAGAGAGACAGAGAGACAGAGAGACAGAGAGACAGC  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGACAGAGAGAGAGACAGAGAGACAGAGAGACAGAGAGACAGC  796

seq1  GAGACAGAGAGACAGAGAGACAGACACAGACACAGAGACACAGAGTAAGA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAGAGAGACAGAGAGACAGACACAGACACAGAGACACAGAGTAAGA  846

seq1  GATGTGCATGGCTTATTTAAGGAACATGAAAATGGGTTTGCTTTTCATGA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGCATGGCTTATTTAAGGAACATGAAAATGGGTTTGCTTTTCATGA  896

seq1  TATATAACCCCCACAAATATTATGCAATAGAATCTTTTGGTAGTATTCAA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAACCCCCACAAATATTATGCAATAGAATCTTTTGGTAGTATTCAA  946

seq1  CTTATTAGCTTGAATCCTCTAGTTAAAGAGGATGACATTGGACATATGGA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTAGCTTGAATCCTCTAGTTAAAGAGGATGACATTGGACATATGGA  996

seq1  ATTC  997
      ||||
seq2  ATTC  1000

seq1: chr1_116518463_116519619
seq2: B6Ng01-327G21.g_68_1231

seq1  GAATTCTCCTATAAAGGGGCATAGAACCATCACAAGACCTAGGGCCTCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTATAAAGGGGCATAGAACCATCACAAGACCTAGGGCCTCTC  50

seq1  TTCCTATTGATGACCGACTAGGTCATCCTTGTCTCCATATATAGCTAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTATTGATGACCGACTAGGTCATCCTTGTCTCCATATATAGCTAGAG  100

seq1  TCACATGTCTTACCATATATTTTCTTCGATTGGTGGTTTACTTCCAAGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATGTCTTACCATATATTTTCTTCGATTGGTGGTTTACTTCCAAGGA  150

seq1  GCACTGGGGGTACTGATTAGTTCATATTTTTGTTCCTCCTATGGGGTTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTGGGGGTACTGATTAGTTCATATTTTTGTTCCTCCTATGGGGTTTA  200

seq1  ATTAATTAGATTCAACCAGTAGAACACATTTTGTTTGAAACAATACCCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATTAGATTCAACCAGTAGAACACATTTTGTTTGAAACAATACCCCA  250

seq1  ATATTGTCTAATGCATATTATGGTAATTTTAAAGTTAAACAATAATAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGTCTAATGCATATTATGGTAATTTTAAAGTTAAACAATAATAAAA  300

seq1  AACAATTAAATAAAACTAAAAACTTTCTTATAAAATTGAGACTGCAACTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATTAAATAAAACTAAAAACTTTCTTATAAAATTGAGACTGCAACTG  350

seq1  GTCTCAAATTTATTTTTTAAATGTAATTTAAAAAGAAAAAAATCCATACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCAAATTTATTTTTTAAATGTAATTTAAAAAGAAAAAAATCCATACA  400

seq1  TGATCCCCTAAATGATCCTTATGCTGGACTGTATCATTCTTGGTTATAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCCCCTAAATGATCCTTATGCTGGACTGTATCATTCTTGGTTATAGA  450

seq1  TTCCTGGACACTGATATCAACAGCCCTAAGGAACGATCTTAAGAAAATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGGACACTGATATCAACAGCCCTAAGGAACGATCTTAAGAAAATTT  500

seq1  ATCTAACGCATTAAAAACAAGAATTCAGGAGTCTAAAAATCATTAAATTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAACGCATTAAAAACAAGAATTCAGGAGTCTAAAAATCATTAAATTC  550

seq1  TAAGGACTAGAGAAATATCTCACCTGTTAAGAACTCTGTATATTTGTTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGACTAGAGAAATATCTCACCTGTTAAGAACTCTGTATATTTGTTCA  600

seq1  GAGGCAGCACATTCAAATTACCAGAATGTATATGGCATCTCACAACCATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGCACATTCAAATTACCAGAATGTATATGGCATCTCACAACCATC  650

seq1  TTTACATCCAGTTCAGGGGATCTGGTGCCTTCTTCTTGGCCTGTGTGAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACATCCAGTTCAGGGGATCTGGTGCCTTCTTCTTGGCCTGTGTGAGC  700

seq1  ACATACATACATACATACATACATACATACATGCATGCAAAACATTCATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACATACATACATACATACATACATACATGCATGCAAAACATTCATA  750

seq1  AACTTACAATTATAAAATAAGACTTCAAAATGATTTAAGTTTTAATGGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTACAATTATAAAATAAGACTTCAAAATGATTTAAGTTTTAATGGAA  800

seq1  TTAATTATATTTGTTAAAGATATTTCATCTAATTTGAAATATTTTCCCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTATATTTGTTAAAGATATTTCATCTAATTTGAAATATTTTCCCAA  850

seq1  TAATTGTTTTTTTAAATAGAATGATCAATATCTGCATGAGCAAAATACA-  899
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TAATTGTTTTTTTAAATAGAATGATCAATATCTGCATGAGCAAAATACAT  900

seq1  TTTAGATATTGCTTTCAATCAAACATTATGCAGTCATCGTAGGTTA-TCC  948
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TTTAGATATTGCTTTCAATCAAACATTATGCAGTCATCGTAGGTTATTCC  950

seq1  TTT-AAAATAATGTAACAAAGTGGGAATAACTTATTTATTTGCTAATTAT  997
      ||| ||||||||||||  |||||||||||  |||||||||||||||||||
seq2  TTTAAAAATAATGTAAACAAGTGGGAATACTTTATTTATTTGCTAATTAT  1000

seq1  GTGGGTTTT-AGTAAGAA-TTTCCCTAGAAGTAGACTCTGAAGAAGGATT  1045
      ||||||||| |||||||| ||||||||  ||||||||||| |||| ||||
seq2  GTGGGTTTTAAGTAAGAATTTTCCCTAAGAGTAGACTCTGGAGAA-GATT  1049

seq1  TGT-TATATAAAAAGTGGTCATGAAGCTGGT-GAG-ATACCTCAGT-AGA  1091
      ||| ||||||||||||||||||||||||||| ||| ||| |||||| |||
seq2  TGTATATATAAAAAGTGGTCATGAAGCTGGTGGAGAATAACTCAGTAAGA  1099

seq1  TAAGGGTACAAAC--TATATGGGTATG-AAGAATCAAGCTTGAATAATAC  1138
      | | | ||| |||  || |||| |||| |||||||||||||| |||||||
seq2  TTA-GCTACCAACCTTAAATGGCTATGTAAGAATCAAGCTTG-ATAATAC  1147

seq1  AGTTTAACCTATAAAATCT  1157
      ||||||  |||||||||||
seq2  AGTTTA--CTATAAAATCT  1164