BAC Information

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BAC

Clone NameB6Ng01-327H04
Chromosome1 (Build37)
Map Location 155,540,680 - 155,703,584
singlet/doubletdoublet
Overlap geneRgs8, Rgs16, Rnasel, LOC100043347, Rgsl1, 5830403L16Rik
Upstream geneEG639787, Apobec4, Arpc5, Ncf2, Smg7, EG668097, Nmnat2, Lamc2, Lamc1, EG667795, EG626058, 1700012A16Rik, Dhx9, Npl, LOC626096
Downstream geneEG433365, Teddm1, LOC100043357, Glul, LOC100043359, Cacna1e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-327H04.bB6Ng01-327H04.g
ACCGA114991GA114992
length1,1771,107
definitionB6Ng01-327H04.b B6Ng01-327H04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(155,702,397 - 155,703,584)(155,540,680 - 155,541,795)
sequence
gaattcagagggaatgcacacactttgaaaaggagaaaaatggaagacct
tcccaaaattgcccagatgataccagaactctatctagtctacccgggtc
ggaaggggcacacgaccttgagcccaggcaagcgctccctttcatatctt
ttaattacttttcttctttccctagagccagcttcccttatgatctgcac
gggaggaaatctccttcccataggctgtttgggctgcctggaatccacgt
ggatcctggacccacatcttaccacatcttcagagttgctgccagggacc
agatggcctggcatgagatctgagactcggtaccctttgctgattgcaaa
catttagccccttctccctgaggggtcactgagggtgaggagctgggaga
tttctcctcatccacgcactaatcagtgactcgtgaggaagtcaggtgac
aaggacccagagggaatcatcatacaggccgatgccaaggacatacagga
cttacctattgggccatctatgccagagaggaatttgagaactcttgaaa
attttttgtcctattctgccaatgtgatctcttgcccctgcaccctccct
caacaaccctttccaccagaaatctcctacacttccttgcttccctacca
gatgcccatactctaatttcaaagcaaatgtcaactgctttgtaaggttt
atcctgactcctcccttcagaattaaccacatttgtgtgttctgactaca
ccaccactataaaatttaaatcaagacttttcaaatttattttggacttg
agtcaaccagagaacttggtcaaatgcaagtttggatgcagtaggtcggc
gattctacctacccttcttggggtagggtccctgcccccagttcattttg
attggtaaataaagttgcccggcagccaatggttgggcgggagacagagg
cgggacttttaggattgccagacaagaatggaggagacagaccgctatga
ccagaacgagtaaggatcagcctgagatcttattcatgtagagccgggaa
gagcagctcagtgctccttcgatgggtctaggcagcaaagaatggaaaaa
taaattttaagtagttatactcaagcatatcagcaagtgctaggcaattg
gagctaagaaatgattgccagccattg
gaattcattgaacttccttacatttgaaattctagaaagggtcttgggag
atttctcccaggacttctgagcagagctgtccttttgaaagataagagtt
tgtgaatcttcttcaattctattaagaactttcctagaagccgagtgacc
agggaatgtagcatcagtagttttgtgcaatgaggctccgtatgacctgt
ctgttgcctaatgtattccatgtcctcactttcctgtggcatcacatagc
actgatctcttaggatgaaagatggcttggcaaagggaggtacattccca
tagcatgacagcttccctagtgcctgttgctttccctgtctctccacctc
cttcttccatgaagggcatgtaactatgatgggaagactgagaacctagc
ctgagactctcattgcagcttgcttcctggacataccttcttagaatggg
tccacttttggctgttgagaaatagctcccttcttggtctctagcctttg
ggactgacctgggaagatcactgtgaataccaggctgcggaaactctcct
gcaatgtttatgcggtaccctggtggggtgctggctcctggaaacacacc
aggatactctttcttggaggaggcacgaacatcctggagtctctgaagtt
acccaggagaaagctgaccctgccatctcctacagggacagaaagatgaa
tcttcagcacagagagcagaagatggaagatgaacctagaagctgcgacc
tctgggtgacctgagaatgtggtgaaggcactgctgtgataattcacaac
cagtcaactcgggcccattgaagagccataaactttcagcttgggtgaat
gaaatagtctgtgaccaagctgccctagaaagcaggaggtgaaaggctgg
gctgatactcccctttgtggagtgctagcccttctaagacatcctagggt
ttgtattctgctctggagaattagttccttccttggttgtagccagacag
gcaagaagccccatgagtccgttattagtgcactgccttcagtgcacact
gtcatcctgtgagtgggtgttagtgtctggtgtgactcaaaagagagaga
aacatct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_155702397_155703584
seq2: B6Ng01-327H04.b_45_1221 (reverse)

seq1  CAATGGCTG--CATCATTTCTTAAGCTCCACTTGGCTAACACCTCCCCTT  48
      |||||||||   |||||||||| ||||||| ||| ||| ||| | |    
seq2  CAATGGCTGGCAATCATTTCTT-AGCTCCAATTGCCTAGCACTTGC----  45

seq1  CAATATTCCTGAGTTATTACTTACTAAAATTTA-TTTTCCA-TCTTTGCT  96
        |||| | |||| ||| |||   ||||||||| ||||||| ||||||||
seq2  TGATATGCTTGAG-TATAACTACTTAAAATTTATTTTTCCATTCTTTGCT  94

seq1  GCCCTAGACCCAATCG-AGGAGCACCTGAGGCTGCTCTTCCCCGGCTCTT  145
      | ||||||||| |||| ||||||| |||| ||||||||| |||||||| |
seq2  G-CCTAGACCC-ATCGAAGGAGCA-CTGA-GCTGCTCTT-CCCGGCTC-T  138

seq1  ACATGATTAAGATCCTCAGGCCTGATCCTTACTCGTTTCTGGTCATAGCG  195
      |||||| |||||| |||||| |||||||||||||| ||||||||||||||
seq2  ACATGAATAAGAT-CTCAGG-CTGATCCTTACTCG-TTCTGGTCATAGCG  185

seq1  GTTCTGTCTCCTCCATTCCTTGTCTGGCAATCCTAAAAGTCCCGCCTCTG  245
      | ||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  G-TCTGTCTCCTCCATT-CTTGTCTGGCAATCCTAAAAGTCCCGCCTCTG  233

seq1  TCTCCCGCCCAACCATTGGCTGCC-GGCAACTTTATTTACCAATCAAAAT  294
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TCTCCCGCCCAACCATTGGCTGCCGGGCAACTTTATTTACCAATCAAAAT  283

seq1  GAACTGGGGGCAGGGACCCTACCCCAAGAAGGGTAGGTAGAATCGCCGAC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGGGGGCAGGGACCCTACCCCAAGAAGGGTAGGTAGAATCGCCGAC  333

seq1  CTACTGCATCCAAACTTGCATTTGACCAAGTTCTCTGGTTGACTCAAGTC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGCATCCAAACTTGCATTTGACCAAGTTCTCTGGTTGACTCAAGTC  383

seq1  CAAAATAAATTTGAAAAGTCTTGATTTAAATTTTATAGTGGTGGTGTAGT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATAAATTTGAAAAGTCTTGATTTAAATTTTATAGTGGTGGTGTAGT  433

seq1  CAGAACACACAAATGTGGTTAATTCTGAAGGGAGGAGTCAGGATAAACCT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACACACAAATGTGGTTAATTCTGAAGGGAGGAGTCAGGATAAACCT  483

seq1  TACAAAGCAGTTGACATTTGCTTTGAAATTAGAGTATGGGCATCTGGTAG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAGCAGTTGACATTTGCTTTGAAATTAGAGTATGGGCATCTGGTAG  533

seq1  GGAAGCAAGGAAGTGTAGGAGATTTCTGGTGGAAAGGGTTGTTGAGGGAG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCAAGGAAGTGTAGGAGATTTCTGGTGGAAAGGGTTGTTGAGGGAG  583

seq1  GGTGCAGGGGCAAGAGATCACATTGGCAGAATAGGACAAAAAATTTTCAA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCAGGGGCAAGAGATCACATTGGCAGAATAGGACAAAAAATTTTCAA  633

seq1  GAGTTCTCAAATTCCTCTCTGGCATAGATGGCCCAATAGGTAAGTCCTGT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCTCAAATTCCTCTCTGGCATAGATGGCCCAATAGGTAAGTCCTGT  683

seq1  ATGTCCTTGGCATCGGCCTGTATGATGATTCCCTCTGGGTCCTTGTCACC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCCTTGGCATCGGCCTGTATGATGATTCCCTCTGGGTCCTTGTCACC  733

seq1  TGACTTCCTCACGAGTCACTGATTAGTGCGTGGATGAGGAGAAATCTCCC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTCCTCACGAGTCACTGATTAGTGCGTGGATGAGGAGAAATCTCCC  783

seq1  AGCTCCTCACCCTCAGTGACCCCTCAGGGAGAAGGGGCTAAATGTTTGCA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCTCACCCTCAGTGACCCCTCAGGGAGAAGGGGCTAAATGTTTGCA  833

seq1  ATCAGCAAAGGGTACCGAGTCTCAGATCTCATGCCAGGCCATCTGGTCCC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGCAAAGGGTACCGAGTCTCAGATCTCATGCCAGGCCATCTGGTCCC  883

seq1  TGGCAGCAACTCTGAAGATGTGGTAAGATGTGGGTCCAGGATCCACGTGG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGCAACTCTGAAGATGTGGTAAGATGTGGGTCCAGGATCCACGTGG  933

seq1  ATTCCAGGCAGCCCAAACAGCCTATGGGAAGGAGATTTCCTCCCGTGCAG  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCAGGCAGCCCAAACAGCCTATGGGAAGGAGATTTCCTCCCGTGCAG  983

seq1  ATCATAAGGGAAGCTGGCTCTAGGGAAAGAAGAAAAGTAATTAAAAGATA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATAAGGGAAGCTGGCTCTAGGGAAAGAAGAAAAGTAATTAAAAGATA  1033

seq1  TGAAAGGGAGCGCTTGCCTGGGCTCAAGGTCGTGTGCCCCTTCCGACCCG  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGGGAGCGCTTGCCTGGGCTCAAGGTCGTGTGCCCCTTCCGACCCG  1083

seq1  GGTAGACTAGATAGAGTTCTGGTATCATCTGGGCAATTTTGGGAAGGTCT  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGACTAGATAGAGTTCTGGTATCATCTGGGCAATTTTGGGAAGGTCT  1133

seq1  TCCATTTTTCTCCTTTTCAAAGTGTGTGCATTCCCTCTGAATTC  1188
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTTTTCTCCTTTTCAAAGTGTGTGCATTCCCTCTGAATTC  1177

seq1: chr1_155540680_155541795
seq2: B6Ng01-327H04.g_66_1172

seq1  GAATTCATTGAACTTCCTTACATTTGAAATTCTAGAAAGGGTCTTGGGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGAACTTCCTTACATTTGAAATTCTAGAAAGGGTCTTGGGAG  50

seq1  ATTTCTCCCAGGACTTCTGAGCAGAGCTGTCCTTTTGAAAGATAAGAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTCCCAGGACTTCTGAGCAGAGCTGTCCTTTTGAAAGATAAGAGTT  100

seq1  TGTGAATCTTCTTCAATTCTATTAAGAACTTTCCTAGAAGCCGAGTGACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAATCTTCTTCAATTCTATTAAGAACTTTCCTAGAAGCCGAGTGACC  150

seq1  AGGGAATGTAGCATCAGTAGTTTTGTGCAATGAGGCTCCGTATGACCTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAATGTAGCATCAGTAGTTTTGTGCAATGAGGCTCCGTATGACCTGT  200

seq1  CTGTTGCCTAATGTATTCCATGTCCTCACTTTCCTGTGGCATCACATAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGCCTAATGTATTCCATGTCCTCACTTTCCTGTGGCATCACATAGC  250

seq1  ACTGATCTCTTAGGATGAAAGATGGCTTGGCAAAGGGAGGTACATTCCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATCTCTTAGGATGAAAGATGGCTTGGCAAAGGGAGGTACATTCCCA  300

seq1  TAGCATGACAGCTTCCCTAGTGCCTGTTGCTTTCCCTGTCTCTCCACCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATGACAGCTTCCCTAGTGCCTGTTGCTTTCCCTGTCTCTCCACCTC  350

seq1  CTTCTTCCATGAAGGGCATGTAACTATGATGGGAAGACTGAGAACCTAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTCCATGAAGGGCATGTAACTATGATGGGAAGACTGAGAACCTAGC  400

seq1  CTGAGACTCTCATTGCAGCTTGCTTCCTGGACATACCTTCTTAGAATGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGACTCTCATTGCAGCTTGCTTCCTGGACATACCTTCTTAGAATGGG  450

seq1  TCCACTTTTGGCTGTTGAGAAATAGCTCCCTTCTTGGTCTCTAGCCTTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTTTTGGCTGTTGAGAAATAGCTCCCTTCTTGGTCTCTAGCCTTTG  500

seq1  GGACTGACCTGGGAAGATCACTGTGAATACCAGGCTGCGGAAACTCTCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTGACCTGGGAAGATCACTGTGAATACCAGGCTGCGGAAACTCTCCT  550

seq1  GCAATGTTTATGCGGTACCCTGGTGGGGTGCTGGCTCCTGGAAACACACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATGTTTATGCGGTACCCTGGTGGGGTGCTGGCTCCTGGAAACACACC  600

seq1  AGGATACTCTTTCTTGGAGGAGGCACGAACATCCTGGAGTCTCTGAAGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATACTCTTTCTTGGAGGAGGCACGAACATCCTGGAGTCTCTGAAGTT  650

seq1  ACCCAGGAGAAAGCTGACCCTGCCATCTCCTACAGGGACAGAAAGATGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGGAGAAAGCTGACCCTGCCATCTCCTACAGGGACAGAAAGATGAA  700

seq1  TCTTCAGCACAGAGAGCAGAAGATGGAAGATGAACCTAGAAGCTGCGACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAGCACAGAGAGCAGAAGATGGAAGATGAACCTAGAAGCTGCGACC  750

seq1  TCTGGGTGACCTGAGAATGTGGTGAAGGCACTGCTGTGATAATTCACAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGTGACCTGAGAATGTGGTGAAGGCACTGCTGTGATAATTCACAAC  800

seq1  CAGTCAACTCGGGCCCATTGAAGAGCCATAAACTTTCAGCTTGGGTGAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCAACTCGGGCCCATTGAAGAGCCATAAACTTTCAGCTTGGGTGAAT  850

seq1  GAAATAGTCTGTGACCAAGCTGCCCTAGAAAGCAGGAGGTGAAAGGCTGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAGTCTGTGACCAAGCTGCCCTAGAAAGCAGGAGGTGAAAGGCTGG  900

seq1  GCTGATACTCCCCTTTGTGGAGTGCTAGCCCTTCTAAGACATCCTAGGGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGATACTCCCCTTTGTGGAGTGCTAGCCCTTCTAAGACATCCTAGGGT  950

seq1  TTGTATTCTGCTCTTGGAGAATTAGTTCCTTCCTTGGTTGTAGCCAGACA  1000
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TTGTATTCTGCTC-TGGAGAATTAGTTCCTTCCTTGGTTGTAGCCAGACA  999

seq1  AGGCCAAGAAGGCCCCATGAGTCCG-TATTAGTGCCAACTGCCCTTCCAA  1049
        | |||||| |||||||||||||| |||||||||  |||| |||||  |
seq2  --GGCAAGAA-GCCCCATGAGTCCGTTATTAGTGC--ACTG-CCTTC--A  1041

seq1  GTGGCACACTGTCAT-CTGTGAGTGGGTGTTAGTGTCTGGGTGTGAACCT  1098
      || |||||||||||| |||||||||||||||||||||| |||||||  ||
seq2  GT-GCACACTGTCATCCTGTGAGTGGGTGTTAGTGTCT-GGTGTGA--CT  1087

seq1  C-AAAGAGAGAG-AACATCT  1116
      | |||||||||| |||||||
seq2  CAAAAGAGAGAGAAACATCT  1107