BAC Information

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BAC

Clone NameB6Ng01-327H11
Chromosome1 (Build37)
Map Location 173,997,637 - 174,176,341
singlet/doubletdoublet
Overlap geneNcstn, Copa, Pex19, LOC100041219, Wdr42a, Pea15a, Casq1, Timm23p
Upstream gene1700009P17Rik, Sdhc, Mpz, Pcp4l1, Nr1i3, Tomm40l, Apoa2, Fcer1g, Ndufs2, Adamts4, B4galt3, Ppox, Usp21, Ufc1, EG622236, Dedd, Nit1, Pfdn2, 1190002J23Rik, Pvrl4, Arhgap30, Usf1, EG226654, F11r, Refbp2, Itlna, Cd244, Ly9, Slamf7, Cd48, LOC100041098, Slamf1, Cd84, Slamf6, Vangl2, LOC100040199, Nhlh1
Downstream geneAtp1a2, Igsf8, Kcnj9, Kcnj10, Pigm, LOC665819, Slamf9, LOC100040274, Igsf9, Tagln2, Ccdc19, EG240916, Slamf8, Fcrl6, Dusp23, LOC100040320, Crp, LOC665875, Apcs, Olfr16, GA_x5J8B7W5Q1F-395172-396104, Olfr1408, GA_x5J8B7W5Q1F-344462-343889, Olfr1406, Olfr218, Olfr1405-ps1, Olfr1404, Fcer1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-327H11.bB6Ng01-327H11.g
ACCGA115005GA115006
length1,1731,108
definitionB6Ng01-327H11.b B6Ng01-327H11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(174,175,242 - 174,176,341)(173,997,637 - 173,998,746)
sequence
gaattccaccataatggacttcgaggccacttaaaatcaacctttgagcc
aacactggatgccctctataaaaacccatggaagataactgtggtttgtt
tctgagggtgactgacatagctcctttgtctcagccccgtcttgttctta
gctcactttagttaaactgagcagaaatatgattccctgttccatcctgg
ttttcccaaccagaataagctggttctttgtgtcctaatggcctaagccc
tccacccccatgacaaccatcatgactcctcagattctccaagtaatccc
ttaaccattcttcctatgacacggtcttggctctctgtcttactaataac
ttgtttgggaaacttgttgctctagttttgttttgttttttttttaagat
ttatttattttatgtatgtgagtacattgtagttctcctcagacacacca
gacagaagagggcaccagatcccatgatagatggttgtgagccaccatgt
ggttgctgggaattgaactcaggacctctagaagagcagtcagtgctctt
aaccactgagccatcgctccaggcagcatattctggtttttctatagtca
tcttaaaatagaaataaggataacatttagggtgtgttaggactagtttt
aaaatgctaggaactaaggatatagtgtaaataaattgtaattccataat
tgggattctatacttacctattcacagcacaatagtttgttaatttttaa
aaaccaccttagcttccatttatgattttaaaacaaatgttctggtttaa
atgatttccccgggggcttttcagtactgtgacatcctttcccaatgtca
ttaccattcccttctgcccaaacttttcagacactattggcaagatgccc
tatccatacatagcactgtataccacagtaaaacgtgacccagcgatgtg
gtccttgtagagagcggatctgaaagacagggagtggtctgggatggaaa
agaggctcctgaatgaaagatctaatgcgtccggggaaggagcctgtgct
ctgtgacagacacagagtgaggcgccacactgaaaactctcgccatagac
cattttcttcagcaatccttacgagagaatcacaggtggatttctaaaga
ccgggttagagtaaatgaaataa
gaattccaagggccttgtacccacgagtattcatataactgcacaggaag
acaggtcatggcacaagggctgagctggcactcttcttcttgctccccac
gcccctctggcaccatattccaaccacctccaccaactggctgcaactct
tcatcccacaacactccagttcctaggcctacccctctgcctttccgtgt
caatcccgcatctgcccaagagagtcccaacttctccgagggaaagaggt
cccaggacacctccgacacccaccgccactcacatccttgctctcatttg
ggactttacttggatcctggcactgctctcgggtgaggttggtcgccttg
ccagtcaggtttgccaaggcgtactgcacaacgtaagtcgtgttggtagg
gctggagacggcgatgtagtgttgaagaggcctgtcatctgattgtaggc
cgaaggggaaggaggagttggaaggtgaggacaagtggggtgggaacaga
aagagcccagtgttggccagaagggagcacgttagaaaaagagggtccaa
acaacatcaagaaaaaggaaggaggacaggcagaaagaaagtagaggaaa
gaaaaatgaaagcaaaatgatgcttttttctctgcatagtttatcaggtg
gggatcacccttctcacagcagatgcttacccaaataggaccttaggtca
tgtttcaagatcgactgaaaccatgagttgttagctctaaccaggaaccc
atagagcagacgtgtaacctaggatcgggacatagaaaaaagaaaatgct
ccaacttgtcacaagaccaagcaaacaatgagcagagcccagttacaaga
caggaactctacttcctggggctgggagatggtggccgggtcgaaaggga
tgtagataaagcccacttcaagaactctcagaggttatcatcctcgcagc
atgagggggcatgctaaatcccaaagttttgggaagtggcaccggaccat
agagatggggcagtctgggtaacagagacgaaaggaacggggccatcttt
tcttactgtctggggaatcgcctggatgagctgcttgagttgatcttcct
gcaagctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_174175242_174176341
seq2: B6Ng01-327H11.b_120_1217 (reverse)

seq1  TTATTTCCCTTTTACTCTAACCCGGTCTTTAGAAATCCCACCTGTGA-TC  49
      ||||||  | |||||||||||||||||||||||||| |||||||||| ||
seq2  TTATTT--CATTTACTCTAACCCGGTCTTTAGAAAT-CCACCTGTGATTC  47

seq1  TCT-GTAAGGGATGCTG-AGGAAATGGTCTATGGCGAGAGTTTTCAGTGT  97
      ||| ||||||  ||||| || |||||||||||||||||||||||||||||
seq2  TCTCGTAAGGATTGCTGAAGAAAATGGTCTATGGCGAGAGTTTTCAGTGT  97

seq1  -GCGCCTCACTCCTGTGTCTGTCACAGAGCACAGGCTCCTTCCCCGGGAC  146
       |||||||||| ||||||||||||||||||||||||||||||||| ||||
seq2  GGCGCCTCACT-CTGTGTCTGTCACAGAGCACAGGCTCCTTCCCC-GGAC  145

seq1  GCATTTAGATCTTTCATTCAGGAGCCTCTTTTCCATCCCAGACCACTCCC  196
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCA-TTAGATCTTTCATTCAGGAGCCTCTTTTCCATCCCAGACCACTCCC  194

seq1  TGTCTTTCAGATCCGCTCTCTACAAGGACCACATCGCTGGGTCACGTTTT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTTCAGATCCGCTCTCTACAAGGACCACATCGCTGGGTCACGTTTT  244

seq1  ACTGTGGTATACAGTGCTATGTATGGATAGGGCATCTTGCCAATAGTGTC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGGTATACAGTGCTATGTATGGATAGGGCATCTTGCCAATAGTGTC  294

seq1  TGAAAAGTTTGGGCAGAAGGGAATGGTAATGACATTGGGAAAGGATGTCA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAGTTTGGGCAGAAGGGAATGGTAATGACATTGGGAAAGGATGTCA  344

seq1  CAGTACTGAAAAGCCCCCGGGGAAATCATTTAAACCAGAACATTTGTTTT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTACTGAAAAGCCCCCGGGGAAATCATTTAAACCAGAACATTTGTTTT  394

seq1  AAAATCATAAATGGAAGCTAAGGTGGTTTTTAAAAATTAACAAACTATTG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCATAAATGGAAGCTAAGGTGGTTTTTAAAAATTAACAAACTATTG  444

seq1  TGCTGTGAATAGGTAAGTATAGAATCCCAATTATGGAATTACAATTTATT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTGAATAGGTAAGTATAGAATCCCAATTATGGAATTACAATTTATT  494

seq1  TACACTATATCCTTAGTTCCTAGCATTTTAAAACTAGTCCTAACACACCC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACTATATCCTTAGTTCCTAGCATTTTAAAACTAGTCCTAACACACCC  544

seq1  TAAATGTTATCCTTATTTCTATTTTAAGATGACTATAGAAAAACCAGAAT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGTTATCCTTATTTCTATTTTAAGATGACTATAGAAAAACCAGAAT  594

seq1  ATGCTGCCTGGAGCGATGGCTCAGTGGTTAAGAGCACTGACTGCTCTTCT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGCCTGGAGCGATGGCTCAGTGGTTAAGAGCACTGACTGCTCTTCT  644

seq1  AGAGGTCCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTCCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATC  694

seq1  TATCATGGGATCTGGTGCCCTCTTCTGTCTGGTGTGTCTGAGGAGAACTA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATGGGATCTGGTGCCCTCTTCTGTCTGGTGTGTCTGAGGAGAACTA  744

seq1  CAATGTACTCACATACATAAAATAAATAAATCTTAAAAAAAAAACAAAAC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTACTCACATACATAAAATAAATAAATCTTAAAAAAAAAACAAAAC  794

seq1  AAAACTAGAGCAACAAGTTTCCCAAACAAGTTATTAGTAAGACAGAGAGC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTAGAGCAACAAGTTTCCCAAACAAGTTATTAGTAAGACAGAGAGC  844

seq1  CAAGACCGTGTCATAGGAAGAATGGTTAAGGGATTACTTGGAGAATCTGA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGACCGTGTCATAGGAAGAATGGTTAAGGGATTACTTGGAGAATCTGA  894

seq1  GGAGTCATGATGGTTGTCATGGGGGTGGAGGGCTTAGGCCATTAGGACAC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTCATGATGGTTGTCATGGGGGTGGAGGGCTTAGGCCATTAGGACAC  944

seq1  AAAGAACCAGCTTATTCTGGTTGGGAAAACCAGGATGGAACAGGGAATCA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAACCAGCTTATTCTGGTTGGGAAAACCAGGATGGAACAGGGAATCA  994

seq1  TATTTCTGCTCAGTTTAACTAAAGTGAGCTAAGAACAAGACGGGGCTGAG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTGCTCAGTTTAACTAAAGTGAGCTAAGAACAAGACGGGGCTGAG  1044

seq1  ACAAAGGAGCTATGTCAGTCACCCTCAGAAACAAACCACAGTTATCTTCC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGGAGCTATGTCAGTCACCCTCAGAAACAAACCACAGTTATCTTCC  1094

seq1  ATGG  1100
      ||||
seq2  ATGG  1098

seq1: chr1_173997637_173998746
seq2: B6Ng01-327H11.g_62_1169

seq1  GAATTCCAAGGGCCTTGTACCCACGAGTATTCATATAACTGCACAGGAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGGGCCTTGTACCCACGAGTATTCATATAACTGCACAGGAAG  50

seq1  ACAGGTCATGGCACAAGGGCTGAGCTGGCACTCTTCTTCTTGCTCCCCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTCATGGCACAAGGGCTGAGCTGGCACTCTTCTTCTTGCTCCCCAC  100

seq1  GCCCCTCTGGCACCATATTCCAACCACCTCCACCAACTGGCTGCAACTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCTCTGGCACCATATTCCAACCACCTCCACCAACTGGCTGCAACTCT  150

seq1  TCATCCCACAACACTCCAGTTCCTAGGCCTACCCCTCTGCCTTTCCGTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCCACAACACTCCAGTTCCTAGGCCTACCCCTCTGCCTTTCCGTGT  200

seq1  CAATCCCGCATCTGCCCAAGAGAGTCCCAACTTCTCCGAGGGAAAGAGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCCCGCATCTGCCCAAGAGAGTCCCAACTTCTCCGAGGGAAAGAGGT  250

seq1  CCCAGGACACCTCCGACACCCACCGCCACTCACATCCTTGCTCTCATTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGACACCTCCGACACCCACCGCCACTCACATCCTTGCTCTCATTTG  300

seq1  GGACTTTACTTGGATCCTGGCACTGCTCTCGGGTGAGGTTGGTCGCCTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTTACTTGGATCCTGGCACTGCTCTCGGGTGAGGTTGGTCGCCTTG  350

seq1  CCAGTCAGGTTTGCCAAGGCGTACTGCACAACGTAAGTCGTGTTGGTAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTCAGGTTTGCCAAGGCGTACTGCACAACGTAAGTCGTGTTGGTAGG  400

seq1  GCTGGAGACGGCGATGTAGTGTTGAAGAGGCCTGTCATCTGATTGTAGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGAGACGGCGATGTAGTGTTGAAGAGGCCTGTCATCTGATTGTAGGC  450

seq1  CGAAGGGGAAGGAGGAGTTGGAAGGTGAGGACAAGTGGGGTGGGAACAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAGGGGAAGGAGGAGTTGGAAGGTGAGGACAAGTGGGGTGGGAACAGA  500

seq1  AAGAGCCCAGTGTTGGCCAGAAGGGAGCACGTTAGAAAAAGAGGGTCCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCCCAGTGTTGGCCAGAAGGGAGCACGTTAGAAAAAGAGGGTCCAA  550

seq1  ACAACATCAAGAAAAAGGAAGGAGGACAGGCAGAAAGAAAGTAGAGGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACATCAAGAAAAAGGAAGGAGGACAGGCAGAAAGAAAGTAGAGGAAA  600

seq1  GAAAAATGAAAGCAAAATGATGCTTTTTTCTCTGCATAGTTTATCAGGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATGAAAGCAAAATGATGCTTTTTTCTCTGCATAGTTTATCAGGTG  650

seq1  GGGATCACCCTTCTCACAGCAGATGCTTACCCAAATAGGACCTTAGGTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATCACCCTTCTCACAGCAGATGCTTACCCAAATAGGACCTTAGGTCA  700

seq1  TGTTTCAAGATCGACTGAAACCATGAGTTGTTAGCTCTAACCAGGAACCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCAAGATCGACTGAAACCATGAGTTGTTAGCTCTAACCAGGAACCC  750

seq1  ATAGAGCAGACGTGTAACCTAGGATCGGGACATAGAAAAAAGAAAATGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGCAGACGTGTAACCTAGGATCGGGACATAGAAAAAAGAAAATGCT  800

seq1  CCAACTTGTCACAAGACCAAGCAAACAATGAGCAGAGCCCAGTTACAAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACTTGTCACAAGACCAAGCAAACAATGAGCAGAGCCCAGTTACAAGA  850

seq1  CAGGAACTCTAC-TCCTGGGGCTGGGAGATGGTGGCC-GGTCGAAA-GGA  897
      |||||||||||| |||||||||||||||||||||||| |||||||| |||
seq2  CAGGAACTCTACTTCCTGGGGCTGGGAGATGGTGGCCGGGTCGAAAGGGA  900

seq1  TGTAGATAAAGCCCAC-TCAAGAACTCTCAGAGG-TATCATCCTCGCAGG  945
      |||||||||||||||| ||||||||||||||||| ||||||||||||| |
seq2  TGTAGATAAAGCCCACTTCAAGAACTCTCAGAGGTTATCATCCTCGCA-G  949

seq1  CATGAGGGGGCATGCTAAATCCCAAAG-TTTGGGAAGTTGGCA-CGGACC  993
      ||||||||||||||||||||||||||| ||||||||| ||||| ||||||
seq2  CATGAGGGGGCATGCTAAATCCCAAAGTTTTGGGAAG-TGGCACCGGACC  998

seq1  ATAGAGGATGGGGGCAGCCTGGGTTAACAGAGACAGAAAGGAACGGGGCC  1043
      ||||| ||| ||||||| ||||| |||||||||| ||||||||||||| |
seq2  ATAGA-GAT-GGGGCAGTCTGGG-TAACAGAGAC-GAAAGGAACGGGG-C  1043

seq1  CATCTTTTCTTACTGTCTGGGGATCAGCCTGGATGGAGCTGCTGAAGTTG  1093
      |||||||||||||||||||||||   |||||||| ||||||||  |||| 
seq2  CATCTTTTCTTACTGTCTGGGGAATCGCCTGGAT-GAGCTGCTTGAGTT-  1091

seq1  GTTCCTCCTGCAAGCTC  1110
      | || ||||||||||||
seq2  GATCTTCCTGCAAGCTC  1108