BAC Information

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BAC

Clone NameB6Ng01-327H24
Chromosome1 (Build37)
Map Location 174,163,383 - 174,265,146
singlet/doubletdoublet
Overlap geneAtp1a2, Igsf8, Kcnj9
Upstream geneFcer1g, Ndufs2, Adamts4, B4galt3, Ppox, Usp21, Ufc1, EG622236, Dedd, Nit1, Pfdn2, 1190002J23Rik, Pvrl4, Arhgap30, Usf1, EG226654, F11r, Refbp2, Itlna, Cd244, Ly9, Slamf7, Cd48, LOC100041098, Slamf1, Cd84, Slamf6, Vangl2, LOC100040199, Nhlh1, Ncstn, Copa, Pex19, LOC100041219, Wdr42a, Pea15a, Casq1, Timm23p
Downstream geneKcnj10, Pigm, LOC665819, Slamf9, LOC100040274, Igsf9, Tagln2, Ccdc19, EG240916, Slamf8, Fcrl6, Dusp23, LOC100040320, Crp, LOC665875, Apcs, Olfr16, GA_x5J8B7W5Q1F-395172-396104, Olfr1408, GA_x5J8B7W5Q1F-344462-343889, Olfr1406, Olfr218, Olfr1405-ps1, Olfr1404, Fcer1a, Olfr1403, Darc, Cadm3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-327H24.bB6Ng01-327H24.g
ACCGA115031GA115032
length1,108386
definitionB6Ng01-327H24.b B6Ng01-327H24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(174,163,383 - 174,164,484)(174,264,755 - 174,265,146)
sequence
gaattctctggactgagggtgattgagttcatgcagttactttgcagata
atttccgattggtcttagcaggtccgaatcattcagacaaacaagtttct
ctggggccctgctgaagactgaagcattcagttttcgaggcaatggctac
ctcactctgaaaactgtattgaagtaagtacatgggaatcctagcaagcc
cataaagaagatatgatgtatgccagggtctcagtctccctggcaaatct
gaacaacgctccaacttcgtctttaaaaagaacacttaagtattagctga
atctttttctttcttttctctctctctctctctctctctctctctctctc
tctttctttctttctttaatataaggtctcccattttacacaggcaggcc
tcagaattgctgtgtagccaaggatgactgaccttcctgcctccatcatc
tgagcgctggggtaataagtattctatgtggtgttgggacctaagcctag
ggctttacacctgctggatgagtagtcgacaaaccatcttcctccagccc
aagctgatggaatgttcaaggctttgtcctctaatttcttgcggtccgta
caggattgggaggttggacggtaaccataggtaatgaaggtaacgtactt
taagccccactcaaaggaccaaatccagccatcaggtaccctcctcctca
ccctcctccacgcctgtcacaatggaggcaaaattgtcgtcaagaaggat
catgtcagccgcctgtttagagacatcagagcctgtgatgcccatggcaa
tgccgatgtcagccttcttcagtgcgggggagtcgttcaccccgtcacca
gtcactgccacaatggctccctggtgaaatccagacaagagtgaaaaaaa
aatgtgtgttagatttcaggatcagtcccaaaggtcaactcgatttcagt
atctttgcagtcgtgtttaactgttgctcagccctgtcttctgtttcctg
tgagcctattttagccttcagagagctttcaaactggaaggcgatcaaca
aggttcaagatgggaattccctcagtaactttctaccaattccatggtgt
tccctgct
atatcaattgttatttggactaacttgaccttcctactcccctcagctca
catcctcaaccgtccctgccttcccctccagacttcctcccccatttcca
cgcttttgctcaagaagtctcatgatctcgttcaaggaagctctcccagg
ttggctgaccccatagctggcaacaaaggcaactactgctaggggtgaac
acaaggctacagtgcactcatcctgcacccaaactcagaactgttggggg
gtggagaaagggaatgtctctcccctcccctcaaaccagcaccaacaaga
tgcaaacctataagaactgagatgtttgaaaagagctgggttttttctct
agtttgcaccaaagtgtgtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_174163383_174164484
seq2: B6Ng01-327H24.b_49_1156

seq1  GAATTCTCTGGACTGAGGGTGATTGAGTTCATGCAGTTACTTTGCAGATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGGACTGAGGGTGATTGAGTTCATGCAGTTACTTTGCAGATA  50

seq1  ATTTCCGATTGGTCTTAGCAGGTCCGAATCATTCAGACAAACAAGTTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCGATTGGTCTTAGCAGGTCCGAATCATTCAGACAAACAAGTTTCT  100

seq1  CTGGGGCCCTGCTGAAGACTGAAGCATTCAGTTTTCGAGGCAATGGCTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGCCCTGCTGAAGACTGAAGCATTCAGTTTTCGAGGCAATGGCTAC  150

seq1  CTCACTCTGAAAACTGTATTGAAGTAAGTACATGGGAATCCTAGCAAGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTCTGAAAACTGTATTGAAGTAAGTACATGGGAATCCTAGCAAGCC  200

seq1  CATAAAGAAGATATGATGTATGCCAGGGTCTCAGTCTCCCTGGCAAATCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAGAAGATATGATGTATGCCAGGGTCTCAGTCTCCCTGGCAAATCT  250

seq1  GAACAACGCTCCAACTTCGTCTTTAAAAAGAACACTTAAGTATTAGCTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAACGCTCCAACTTCGTCTTTAAAAAGAACACTTAAGTATTAGCTGA  300

seq1  ATCTTTTTCTTTCTTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTTTCTTTCTTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  350

seq1  TCTTTCTTTCTTTCTTTAATATAAGGTCTCCCATTTTACACAGGCAGGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTTTCTTTCTTTAATATAAGGTCTCCCATTTTACACAGGCAGGCC  400

seq1  TCAGAATTGCTGTGTAGCCAAGGATGACTGACCTTCCTGCCTCCATCATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAATTGCTGTGTAGCCAAGGATGACTGACCTTCCTGCCTCCATCATC  450

seq1  TGAGCGCTGGGGTAATAAGTATTCTATGTGGTGTTGGGACCTAAGCCTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCGCTGGGGTAATAAGTATTCTATGTGGTGTTGGGACCTAAGCCTAG  500

seq1  GGCTTTACACCTGCTGGATGAGTAGTCGACAAACCATCTTCCTCCAGCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTACACCTGCTGGATGAGTAGTCGACAAACCATCTTCCTCCAGCCC  550

seq1  AAGCTGATGGAATGTTCAAGGCTTTGTCCTCTAATTTCTTGCGGTCCGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGATGGAATGTTCAAGGCTTTGTCCTCTAATTTCTTGCGGTCCGTA  600

seq1  CAGGATTGGGAGGTTGGACGGTAACCATAGGTAATGAAGGTAACGTACTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATTGGGAGGTTGGACGGTAACCATAGGTAATGAAGGTAACGTACTT  650

seq1  TAAGCCCCACTCAAAGGACCAAATCCAGCCATCAGGTACCCTCCTCCTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCCCCACTCAAAGGACCAAATCCAGCCATCAGGTACCCTCCTCCTCA  700

seq1  CCCTCCTCCACGCCTGTCACAATGGAGGCAAAATTGTCGTCAAGAAGGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCTCCACGCCTGTCACAATGGAGGCAAAATTGTCGTCAAGAAGGAT  750

seq1  CATGTCAGCCGCCTGTTTAGAGACATCAGAGCCTGTGATGCCCATGGCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCAGCCGCCTGTTTAGAGACATCAGAGCCTGTGATGCCCATGGCAA  800

seq1  TGCCGATGTCAGCCTTCTTCAGTGCGGGGGAGTCGTTCACCCCGTCACCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCGATGTCAGCCTTCTTCAGTGCGGGGGAGTCGTTCACCCCGTCACCA  850

seq1  GTCACTGCCACAATGGCTCCCTGGTGAAATCCAGACAAGAGTGAAAAAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTGCCACAATGGCTCCCTGGTGAAATCCAGACAAGAGTGAAAAAAA  900

seq1  AATGTGTGTTAGA-TTCAGGATCAGTCCCAAAGGTCAACTCGATTTCAGT  949
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AATGTGTGTTAGATTTCAGGATCAGTCCCAAAGGTCAACTCGATTTCAGT  950

seq1  ATC-TTGCAGTCGTGTTTAACTG-TGCTCAGCCCTGTCTTCTG-TTCCTG  996
      ||| ||||||||||||||||||| ||||||||||||||||||| ||||||
seq2  ATCTTTGCAGTCGTGTTTAACTGTTGCTCAGCCCTGTCTTCTGTTTCCTG  1000

seq1  TGAG-CTATTTAAGCCTTCAGAGAGCTTTCAAACT-GAAGGCGATCAACC  1044
      |||| |||||| ||||||||||||||||||||||| ||||||||||||| 
seq2  TGAGCCTATTTTAGCCTTCAGAGAGCTTTCAAACTGGAAGGCGATCAACA  1050

seq1  AGGTTCAAGATGGG-ATTCCCTCCAGTACCTTCCTACCCATTCCAT-GTG  1092
      |||||||||||||| ||||||| ||||| ||| ||||| ||||||| |||
seq2  AGGTTCAAGATGGGAATTCCCT-CAGTAACTTTCTACCAATTCCATGGTG  1099

seq1  TTCCCCTGCT  1102
      || |||||||
seq2  TT-CCCTGCT  1108

seq1: chr1_174264755_174265146
seq2: B6Ng01-327H24.g_65_456 (reverse)

seq1  CACACACACACACACACACACACTTTGGTGCAAACTAGAGAAAAAACCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACTTTGGTGCAAACTAGAGAAAAAACCCA  50

seq1  GCTCTTTTCAAACATCTCAGTTCTTATAGGTTTGCATCTTGTTGGTGCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTTTCAAACATCTCAGTTCTTATAGGTTTGCATCTTGTTGGTGCTG  100

seq1  GTTTGAGGGGAGGGGAGAGACATTCCCTTTCTCCACCCCCCAACAGTTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGAGGGGAGGGGAGAGACATTCCCTTTCTCCACCCCCCAACAGTTCT  150

seq1  GAGTTTGGGTGCAGGATGAGTGCACTGTAGCCTTGTGTTCACCCCTAGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTGGGTGCAGGATGAGTGCACTGTAGCCTTGTGTTCACCCCTAGCA  200

seq1  GTAGTTGCCTTTGTTGCCAGCTATGGGGTCAGCCAACCTGGGAGAGCTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTTGCCTTTGTTGCCAGCTATGGGGTCAGCCAACCTGGGAGAGCTTC  250

seq1  CTTGAACGAGATCATGAGACTTCTTGAGCAAAAGCGTGGAAATGGGGGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAACGAGATCATGAGACTTCTTGAGCAAAAGCGTGGAAATGGGGGAG  300

seq1  GAAGTCTGGAGGGGAAGGCAGGGACGGTTGAGGATGTGAGCTGAGGGGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCTGGAGGGGAAGGCAGGGACGGTTGAGGATGTGAGCTGAGGGGAG  350

seq1  TAGGAAGGTCAAGTTAGTCCAAATAACAATTGATATGAATTC  392
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAGGTCAAGTTAGTCCAAATAACAATTGATATGAATTC  392