BAC Information

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BAC

Clone NameB6Ng01-328I22
Chromosome1 (Build37)
Map Location 45,653,614 - 45,759,013
singlet/doubletdoublet
Overlap geneLOC666814
Upstream geneGulp1, LOC100041738, LOC100041752, LOC383640, Col3a1, Col5a2, EG666799, LOC631429
Downstream geneEG666819, Wdr75, EG433297, LOC383644, Slc40a1, LOC670603, EG227054, LOC100042453, EG212225, Dnahc7b, LOC666855
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-328I22.bB6Ng01-328I22.g
ACCGA115789GA115790
length1,088999
definitionB6Ng01-328I22.b B6Ng01-328I22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,653,614 - 45,654,711)(45,758,486 - 45,759,013)
sequence
gaattcaggttacgtaagaggaaaatcatgagacctgggtcacttacaaa
cattgatattcttcgatgaatccttcaacaatacagcagacatctttgtg
tctgagataactacaatacaggattgaagaaacaagaattcataaattaa
cacttcaccccagcttttctcttaaaaggtactgagaataaaacacattt
ttaatataaatttcatggaattcattcagcatattcagattgcttaattt
ctattgtgtgtaagaatcatgggtgaaaacattaagagtttaccatcgag
ttacatatgtttaattgaaattatatttcctgcaatagtctttaatccta
tacaaatgcattgcaataacgtcttaggtaaagaacattcctgaaaacca
taaagaaaataagagaaaagtgaccacaaaaaaaaaaaagatgtctggaa
agactgtttaaaaagtaatgagctttacagattgattgaaaacatcaaga
aatcctccaaaggatatttgcatttggtcagtcagtcagtcagtcagtca
gaatagacttggcaatttgtcaagagaaatatgaataaaagttcctctcc
tccatcacacagtacactctaatcagacgacagctagctaggtcttggtt
tcatttctaaaagtcagtaacataaatatttggctttatgaactggctta
gatttccttttctttcagcttagaaaacatgcagctcccactcacacagg
atttggggaagactctaatgatcctcccattcatagacattcgtctttac
tttggctagtggctggggcaaagctgtcatgtctatcactcattacagag
gtctgaggttccagccaagttttaggaaactcactctgctatagcaacag
actaaacagacaaaaaggcagagtgagaagaggtaagtgcttccagagtc
aaggaatatggaagtaagacatttccaaagcacaatcacagaaatagacc
agaccattcctatcctcgccatggctaagtagaagtataatacttattat
ctactagtgttttacagtctagaatttgtttaatgctt

gaattcacatatttacaagtctataggagagggaacttttatttgcctat
gctagcttcaaattcacaaacatcctgtctcagccttccaaatgctaggg
ttataggatatgctactgttcctggcagtacagtggtttataatttggtc
tgtaccaatgttctactataacaattgaagttcacagctgataaaagttt
taacaatagaaagattgaaatagactagatatttaaaagacatttagaaa
taacttggaatatttaaaaagaattcttgaagttagatggtttcaggcct
ctgcgttactctttagtgttgcactagacattctgaaatttttgtttttt
tcacatagatttgagaacattgttgccaacatttagaaaatagattgcag
ggattttgcttgatagtgtgttgagtctgctgactgagttagagttggca
tgttgacaagttttatagcttgtaaaaaaatagacttaatatttattctt
gtgtgatgtctgttttccctagagccattagcacattagtcatagctatt
ttacattttctgataattataaaaccaatgttatatctgagcctcctagt
atttacatttctccaaaggccttgatgcctgcagtacccttgtttcttct
gttaactttgggtatcaataagaaaatcttctaaagcgcagccatcactc
tgcagttcttctagtattgtctattctcttactgaagtcttgttgacact
gtattaagcagcagcaaaagacaaataattaatgttcttgtgattaaatg
ttagtcttttattggtggcatattcctggctgttagcattcaaagtgttt
ctaatctcttagtattttccttctgcttgccacacatgtgagaaaacgta
ggtgaaattggggttagaaaattgcctctccatctggaagtctggtaaaa
tcattttcatagaggctaggtcttgtttgcagcaaaagcatatctagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_45653614_45654711
seq2: B6Ng01-328I22.b_44_1131

seq1  GAATTCAGGTTACGTAAGAGGAAAATCATGAGACCTGGGTCACTTACAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGTTACGTAAGAGGAAAATCATGAGACCTGGGTCACTTACAAA  50

seq1  CATTGATATTCTTCGATGAATCCTTCAACAATACAGCAGACATCTTTGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGATATTCTTCGATGAATCCTTCAACAATACAGCAGACATCTTTGTG  100

seq1  TCTGAGATAACTACAATACAGGATTGAAGAAACAAGAATTCATAAATTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGATAACTACAATACAGGATTGAAGAAACAAGAATTCATAAATTAA  150

seq1  CACTTCACCCCAGCTTTTCTCTTAAAAGGTACTGAGAATAAAACACATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCACCCCAGCTTTTCTCTTAAAAGGTACTGAGAATAAAACACATTT  200

seq1  TTAATATAAATTTCATGGAATTCATTCAGCATATTCAGATTGCTTAATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATATAAATTTCATGGAATTCATTCAGCATATTCAGATTGCTTAATTT  250

seq1  CTATTGTGTGTAAGAATCATGGGTGAAAACATTAAGAGTTTACCATCGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTGTGTGTAAGAATCATGGGTGAAAACATTAAGAGTTTACCATCGAG  300

seq1  TTACATATGTTTAATTGAAATTATATTTCCTGCAATAGTCTTTAATCCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATATGTTTAATTGAAATTATATTTCCTGCAATAGTCTTTAATCCTA  350

seq1  TACAAATGCATTGCAATAACGTCTTAGGTAAAGAACATTCCTGAAAACCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAATGCATTGCAATAACGTCTTAGGTAAAGAACATTCCTGAAAACCA  400

seq1  TAAAGAAAATAAGAGAAAAGTGACCACAAAAAAAAAAAAGATGTCTGGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAAAATAAGAGAAAAGTGACCACAAAAAAAAAAAAGATGTCTGGAA  450

seq1  AGACTGTTTAAAAAGTAATGAGCTTTACAGATTGATTGAAAACATCAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGTTTAAAAAGTAATGAGCTTTACAGATTGATTGAAAACATCAAGA  500

seq1  AATCCTCCAAAGGATATTTGCATTTGGTCAGTCAGTCAGTCAGTCAGTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTCCAAAGGATATTTGCATTTGGTCAGTCAGTCAGTCAGTCAGTCA  550

seq1  GAATAGACTTGGCAATTTGTCAAGAGAAATATGAATAAAAGTTCCTCTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAGACTTGGCAATTTGTCAAGAGAAATATGAATAAAAGTTCCTCTCC  600

seq1  TCCATCACACAGTACACTCTAATCAGACGACAGCTAGCTAGGTCTTGGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCACACAGTACACTCTAATCAGACGACAGCTAGCTAGGTCTTGGTT  650

seq1  TCATTTCTAAAAGTCAGTAACATAAATATTTGGCTTTATGAACTGGCTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTCTAAAAGTCAGTAACATAAATATTTGGCTTTATGAACTGGCTTA  700

seq1  GATTTCCTTTTCTTTCAGCTTAGAAAACATGCAGCTCCCACTCACACAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCCTTTTCTTTCAGCTTAGAAAACATGCAGCTCCCACTCACACAGG  750

seq1  ATTTGGGGAAGACTCTAATGATCCTCCCATTCATAGACATTCGTCTTTAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGGGAAGACTCTAATGATCCTCCCATTCATAGACATTCGTCTTTAC  800

seq1  TTTGGCTAGTGGCTGGGGCAAAGCTGTCATGTCTATCACTCATTACAGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCTAGTGGCTGGGGCAAAGCTGTCATGTCTATCACTCATTACAGAG  850

seq1  GTCTGAGGTTCCAGCCAAGTTTTAGGAAACTCACTCTGCTATAGCAACAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGAGGTTCCAGCCAAGTTTTAGGAAACTCACTCTGCTATAGCAACAG  900

seq1  ACTAAACAGACAAAAAGGCAGAGTGAGAAGAGGTAAGTGCTTCCAGAGTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAACAGACAAAAAGGCAGAGTGAGAAGAGGTAAGTGCTTCCAGAGTC  950

seq1  AAGGAATATGGAAGTAAGACATTTCCAAAGCACAATCACAGAAAATAAGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||   |||
seq2  AAGGAATATGGAAGTAAGACATTTCCAAAGCACAATCACAGAAA--TAGA  998

seq1  ACCAAGACCATTCCTATCCTCGCCAATGGCTAAGTAGAAGTATAAATACT  1050
        | |||||||||||||||||||| |||||||||||||||||| ||||||
seq2  --CCAGACCATTCCTATCCTCGCC-ATGGCTAAGTAGAAGTAT-AATACT  1044

seq1  TAATTATCTACTAGTGTTTTACCAGTTCTAGGAATTTGTTTAATGCTT  1098
      | ||||||||||||||||||| ||| |||| |||||||||||||||||
seq2  T-ATTATCTACTAGTGTTTTA-CAG-TCTA-GAATTTGTTTAATGCTT  1088


seq1: chr1_45758486_45759013
seq2: B6Ng01-328I22.g_67_594 (reverse)

seq1  ATGGCTCTAGGGAAAACAGACATCACACAAGAATAAATATTAAGTCTATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTCTAGGGAAAACAGACATCACACAAGAATAAATATTAAGTCTATT  50

seq1  TTTTTACAAGCTATAAAACTTGTCAACATGCCAACTCTAACTCAGTCAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTACAAGCTATAAAACTTGTCAACATGCCAACTCTAACTCAGTCAGC  100

seq1  AGACTCAACACACTATCAAGCAAAATCCCTGCAATCTATTTTCTAAATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCAACACACTATCAAGCAAAATCCCTGCAATCTATTTTCTAAATGT  150

seq1  TGGCAACAATGTTCTCAAATCTATGTGAAAAAAACAAAAATTTCAGAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAACAATGTTCTCAAATCTATGTGAAAAAAACAAAAATTTCAGAATG  200

seq1  TCTAGTGCAACACTAAAGAGTAACGCAGAGGCCTGAAACCATCTAACTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGTGCAACACTAAAGAGTAACGCAGAGGCCTGAAACCATCTAACTTC  250

seq1  AAGAATTCTTTTTAAATATTCCAAGTTATTTCTAAATGTCTTTTAAATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATTCTTTTTAAATATTCCAAGTTATTTCTAAATGTCTTTTAAATAT  300

seq1  CTAGTCTATTTCAATCTTTCTATTGTTAAAACTTTTATCAGCTGTGAACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTCTATTTCAATCTTTCTATTGTTAAAACTTTTATCAGCTGTGAACT  350

seq1  TCAATTGTTATAGTAGAACATTGGTACAGACCAAATTATAAACCACTGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTGTTATAGTAGAACATTGGTACAGACCAAATTATAAACCACTGTA  400

seq1  CTGCCAGGAACAGTAGCATATCCTATAACCCTAGCATTTGGAAGGCTGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCAGGAACAGTAGCATATCCTATAACCCTAGCATTTGGAAGGCTGAG  450

seq1  ACAGGATGTTTGTGAATTTGAAGCTAGCATAGGCAAATAAAAGTTCCCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGATGTTTGTGAATTTGAAGCTAGCATAGGCAAATAAAAGTTCCCTC  500

seq1  TCCTATAGACTTGTAAATATGTGAATTC  528
      ||||||||||||||||||||||||||||
seq2  TCCTATAGACTTGTAAATATGTGAATTC  528


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