BAC Information

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BAC

Clone NameB6Ng01-329B03
Chromosome1 (Build37)
Map Location 147,617,206 - 147,749,933
singlet/doubletdoublet
Overlap genenone
Upstream geneRgs18, LOC667877, LOC625057, LOC383570
Downstream geneLOC383571, B830045N13Rik, LOC100043240
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-329B03.bB6Ng01-329B03.g
ACCGA116150GA116151
length1,1641,132
definitionB6Ng01-329B03.b B6Ng01-329B03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(147,748,779 - 147,749,933)(147,617,206 - 147,618,103)
sequence
gaattcttgattatacaaaggagtgggtatctgtttcttgtgcattcttt
tgagctcttttccttctattgtttattttatccatttccagtctgttaga
tttattttattttattttattttattttattttattatagataactatgt
ttttcactcatgaatgtaaggaaccttcacctactaaaattttcctgtgt
actacccagaacctttccaatacaagtgttgaaaacagcaaatagaactg
cctggatttgatcatacatgaggagattatttacacccttcctaaggtaa
acatctctttcataattgaaaatgggaatgggggtgctatagtgagaaat
gacattgtctaatcttataaaagagaagactgagattggtaactttgtaa
gtaataagtgaagagtaagaaagacacaatcaaacatttcccctctacaa
tgatcactctgctacacacatcactattatgaacctatcttgcttaccac
agtggaaatctgtcctgttcctagttgagattctgctactttcctagttc
tttgtgcctgtgcttatactgcatacagaaatccatccaaagacagaaga
tactatccccaacttgaaatgtcagcagtcttatcctatcccactgatat
tttgttttttgtgttatgtattcttattctttcatggtatctcctttaaa
aaaattaaaacacaaagttattgacaaaataactcatgaagatggaacat
atataacaaatacaaaaccccttcaaaatatattatttcttttcaaagat
tctacagttatatagggggtgaggtattttattctcaaacatccctgatg
gcccagaatgttattagacaaatcctttgatccctgagtcctgggataca
gatgtaaaccagcacataaaaaagtatggagagaagcctaagtcaacact
gggtgataagtgtggacagaaaactttgggcttgtccatgtcatgtgtgg
gtatatgctgctcttattctactgaaaaaaaaaaatcataagggcactaa
acataattaggtccaacagaagtaaatattctcctgttatatcgatgtta
cctgggtgagggcaacagaaaaaccattttaataggtcctggctcattgg
agcgccaatattat

gaattcagtaagaatgttgcctattcagtgacattcagaattgcctctag
tattgtaagagagatagcgaaagaaatcaggcattaccatctactacata
gagttagaaatctcagggcaagcttagcaaagtaagtttagaattcttat
tagacttatgtatggcagaatacattacctagtagtagaaagtcccccca
cactgtcacttagaataaaagccaagtcgctcccatatacaggaacttac
aatggtttaggaagtagatctggctgtggttttagagtattgcattattc
atgagaaggttagctaaagcagaactgcctaattagaacatgacttgggt
gtgaaaacccctgccccgggagtgtaaagacctcacacctggcttctaag
aatatagctgcccttagatagagctgactttgtctcagttgttttattgc
ccagttccttcctgccagtctttgggtttacattcctctgttttgtataa
gtcattaaccatccagtaaggtcatttgtaccttgctgatgtgtcaccta
acttccctagtttcttttgtataaaaagtttgatgcttgatttgacaaag
tacattcagatccagcacactccctcatgtggagtctctttgtcactcca
ttatcacagactctatgcccatctgtctgagactctgattcgcatggatt
gaggagggcccactgagcctggtccatggcaataccagaagtattcagta
aaatttttgaacatatgaaaggattataccaatgctgacttcatcaatgg
tggaaacttttaggtttagttgcaaaattatatctgtttagttatagtaa
actagcatgtgctatataaattctccataattaacaaaaatcacttaatt
atttttctgtttatgcagtaaaataacagcaattattgaataaaataatg
ctgatatagatagttgtatccactgggactaggctttctacatctattga
tacgaaaactgtattcagttgtggtttctttgtgtgatctatttccaaag
aagagaggcttctttttgggggggattgtattacattatgtgtgtgcata
taaaggcattattaggaaatatggtgaaggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_147748779_147749933
seq2: B6Ng01-329B03.b_46_1209 (reverse)

seq1  ATAATAT--GCGCT-CAATGAGGCAGGA-CTA-TAAAAT-GTTTTTCTGT  44
      |||||||  ||||| ||||||| ||||| ||| |||||| ||||||||||
seq2  ATAATATTGGCGCTCCAATGAGCCAGGACCTATTAAAATGGTTTTTCTGT  50

seq1  TGCCCTCA--CAGTACATTTGAATAT-ACAGGGAAGAATATTTAACTTCT  91
      ||||||||  |||   |  |  |||| |||||  ||||||||| ||||||
seq2  TGCCCTCACCCAGGTAACATCGATATAACAGG--AGAATATTT-ACTTCT  97

seq1  G-TGGA-CTAATTATGTTTAGTTGCCTTATGATTTTTTTTTTCAAGTAGA  139
      | |||| |||||||||||||||  ||||||||||||||||||  ||||||
seq2  GTTGGACCTAATTATGTTTAGTGCCCTTATGATTTTTTTTTTTCAGTAGA  147

seq1  ATAAGAGCAGCAATATAACCACACATGACATGGACAAG-CCAAAGTTTTC  188
      ||||||||||| ||||| |||||||||||||||||||| |||||||||||
seq2  ATAAGAGCAGC-ATATACCCACACATGACATGGACAAGCCCAAAGTTTTC  196

seq1  TGTCCACACTTATCACCCAGTGTTGACTTAGGCTTCTCTCCATACTTTTT  238
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCACACTTATCACCCAGTGTTGACTTAGGCTTCTCTCCATACTTTTT  246

seq1  TATGTGCTGGTTTACATCTGTATCCCAGGACTCAGGGATCAAAGGATTTG  288
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGCTGGTTTACATCTGTATCCCAGGACTCAGGGATCAAAGGATTTG  296

seq1  TCTAATAACATTCTGGGCCATCAGGGATGTTTGAGAATAAAATACCTCA-  337
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TCTAATAACATTCTGGGCCATCAGGGATGTTTGAGAATAAAATACCTCAC  346

seq1  CCCCTATATAACTGTAGAATCTTTGAAAAGAAATAATATATTTTGAAGGG  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTATATAACTGTAGAATCTTTGAAAAGAAATAATATATTTTGAAGGG  396

seq1  GTTTTGTATTTGTTATATATGTTCCATCTTCATGAGTTATTTTGTCAATA  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTATTTGTTATATATGTTCCATCTTCATGAGTTATTTTGTCAATA  446

seq1  ACTTTGTGTTTTAATTTTTTTAAAGGAGATACCATGAAAGAATAAGAATA  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGTGTTTTAATTTTTTTAAAGGAGATACCATGAAAGAATAAGAATA  496

seq1  CATAACACAAAAAACAAAATATCAGTGGGATAGGATAAGACTGCTGACAT  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAACACAAAAAACAAAATATCAGTGGGATAGGATAAGACTGCTGACAT  546

seq1  TTCAAGTTGGGGATAGTATCTTCTGTCTTTGGATGGATTTCTGTATGCAG  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGTTGGGGATAGTATCTTCTGTCTTTGGATGGATTTCTGTATGCAG  596

seq1  TATAAGCACAGGCACAAAGAACTAGGAAAGTAGCAGAATCTCAACTAGGA  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGCACAGGCACAAAGAACTAGGAAAGTAGCAGAATCTCAACTAGGA  646

seq1  ACAGGACAGATTTCCACTGTGGTAAGCAAGATAGGTTCATAATAGTGATG  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGACAGATTTCCACTGTGGTAAGCAAGATAGGTTCATAATAGTGATG  696

seq1  TGTGTAGCAGAGTGATCATTGTAGAGGGGAAATGTTTGATTGTGTCTTTC  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAGCAGAGTGATCATTGTAGAGGGGAAATGTTTGATTGTGTCTTTC  746

seq1  TTACTCTTCACTTATTACTTACAAAGTTACCAATCTCAGTCTTCTCTTTT  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTCTTCACTTATTACTTACAAAGTTACCAATCTCAGTCTTCTCTTTT  796

seq1  ATAAGATTAGACAATGTCATTTCTCACTATAGCACCCCCATTCCCATTTT  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGATTAGACAATGTCATTTCTCACTATAGCACCCCCATTCCCATTTT  846

seq1  CAATTATGAAAGAGATGTTTACCTTAGGAAGGGTGTAAATAATCTCCTCA  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTATGAAAGAGATGTTTACCTTAGGAAGGGTGTAAATAATCTCCTCA  896

seq1  TGTATGATCAAATCCAGGCAGTTCTATTTGCTGTTTTCAACACTTGTATT  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGATCAAATCCAGGCAGTTCTATTTGCTGTTTTCAACACTTGTATT  946

seq1  GGAAAGGTTCTGGGTAGTACACAGGAAAATTTTAGTAGGTGAAGGTTCCT  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGGTTCTGGGTAGTACACAGGAAAATTTTAGTAGGTGAAGGTTCCT  996

seq1  TACATTCATGAGTGAAAAACATAGTTATCTATAATAAAATAAAATAAAAT  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTCATGAGTGAAAAACATAGTTATCTATAATAAAATAAAATAAAAT  1046

seq1  AAAATAAAATAAAATAAATCTAACAGACTGGAAATGGATAAAATAAACAA  1087
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAAATAAAATAAATCTAACAGACTGGAAATGGATAAAATAAACAA  1096

seq1  TAGAAGGAAAAGAGCTCAAAAGAATGCACAAGAAACAGATACCCACTCCT  1137
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGGAAAAGAGCTCAAAAGAATGCACAAGAAACAGATACCCACTCCT  1146

seq1  TTGTATAATCAAGAATTC  1155
      ||||||||||||||||||
seq2  TTGTATAATCAAGAATTC  1164


seq1: chr1_147617206_147618103
seq2: B6Ng01-329B03.g_299_1195

seq1  TATACAGGAACTTACAATGGTTTAGGAAGTAGATCTGGCTGTGGTTTTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACAGGAACTTACAATGGTTTAGGAAGTAGATCTGGCTGTGGTTTTAG  50

seq1  AGTATTGCATTATTCATGAGAAGGTTAGCTAAAGCAGAACTGCCTAATTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTGCATTATTCATGAGAAGGTTAGCTAAAGCAGAACTGCCTAATTA  100

seq1  GAACATGACTTGGGTGTGAAAACCCCTGCCCCGGGAGTGTAAAGACCTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATGACTTGGGTGTGAAAACCCCTGCCCCGGGAGTGTAAAGACCTCA  150

seq1  CACCTGGCTTCTAAGAATATAGCTGCCCTTAGATAGAGCTGACTTTGTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGGCTTCTAAGAATATAGCTGCCCTTAGATAGAGCTGACTTTGTCT  200

seq1  CAGTTGTTTTATTGCCCAGTTCCTTCCTGCCAGTCTTTGGGTTTACATTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGTTTTATTGCCCAGTTCCTTCCTGCCAGTCTTTGGGTTTACATTC  250

seq1  CTCTGTTTTGTATAAGTCATTAACCATCCAGTAAGGTCATTTGTACCTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTTTTGTATAAGTCATTAACCATCCAGTAAGGTCATTTGTACCTTG  300

seq1  CTGATGTGTCACCTAACTTCCCTAGTTTCTTTTGTATAAAAAGTTTGATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGTGTCACCTAACTTCCCTAGTTTCTTTTGTATAAAAAGTTTGATG  350

seq1  CTTGATTTGACAAAGTACATTCAGATCCAGCACACTCCCTCATGTGGAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATTTGACAAAGTACATTCAGATCCAGCACACTCCCTCATGTGGAGT  400

seq1  CTCTTTGTCACTCCATTATCACAGACTCTATGCCCATCTGTCTGAGACTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTGTCACTCCATTATCACAGACTCTATGCCCATCTGTCTGAGACTC  450

seq1  TGATTCGCATGGATTGAGGAGGGCCCACTGAGCCTGGTCCATGGCAATAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCGCATGGATTGAGGAGGGCCCACTGAGCCTGGTCCATGGCAATAC  500

seq1  CAGAAGTATTCAGTAAAATTTTTGAACATATGAAAGGATTATACCAATGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGTATTCAGTAAAATTTTTGAACATATGAAAGGATTATACCAATGC  550

seq1  TGACTTCATCAATGGTGGAAACTTTTAGGTTTAGTTGCAAAATTATATCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTCATCAATGGTGGAAACTTTTAGGTTTAGTTGCAAAATTATATCT  600

seq1  GTTTAGTTATAGTAAACTAGCATGTGCTATATAAATTCTCCATAATTAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAGTTATAGTAAACTAGCATGTGCTATATAAATTCTCCATAATTAAC  650

seq1  AAAAATCACTTAATTATTTTTCTGTTTATGCAGTAAAATAACAGCAATTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATCACTTAATTATTTTTCTGTTTATGCAGTAAAATAACAGCAATTA  700

seq1  TTGAATAAAATAATGCTGATATAGATAGTTGTATCCACTGGGACTAGGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATAAAATAATGCTGATATAGATAGTTGTATCCACTGGGACTAGGCT  750

seq1  TTCTACAATCTATTGATACGAAAACTGTATTCAGTTGTGGTTTCTTGTGT  800
      |||||| ||||||||||||||||||||||||||||||||||||||| |||
seq2  TTCTAC-ATCTATTGATACGAAAACTGTATTCAGTTGTGGTTTCTT-TGT  798

seq1  -TGATTCCTATTTCCAAAGAAGAGAAGCTTCTTTTTTGGGGGGATTGTAA  849
       ||||  |||||||||||||||||| |||||||||| ||||||||||| |
seq2  GTGAT--CTATTTCCAAAGAAGAGAGGCTTCTTTTTGGGGGGGATTGT-A  845

seq1  TTACATT-TATGTGTGGATATAAGGGCATTATTTAGG--ATATGGT-AAG  895
      ||||||| | |||||| |||||| ||||||| |||||  ||||||| |||
seq2  TTACATTATGTGTGTGCATATAAAGGCATTA-TTAGGAAATATGGTGAAG  894

seq1  GAA  898
      |||
seq2  GAA  897


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