BAC Information

Click to search

BAC

Clone NameB6Ng01-329C21
Chromosome1 (Build37)
Map Location 114,981,338 - 114,982,431
singlet/doubletsinglet
Overlap genenone
Upstream geneEG626897, LOC666615, LOC666635
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-329C21.bB6Ng01-329C21.g
ACCGA116225GA116226
length1,2161,089
definitionB6Ng01-329C21.b B6Ng01-329C21.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttacagctttttgttattataaataaggtggctatgaacatag
tggagcatgtatctatgttatataatgaaacatttttgggtatatgccca
ggagcagtatatctgggccctaaggtagaactatttccaatttctacagg
aacaaccagactgatttccaaagtcgttttactagcttgcaatcccacca
gcaatggaggagtgtgcctcgttctccacatcttcaccaacaactgctgt
cacctgcatatttgatcttagacattctgactggtgtaaggtggaatctc
agggtcatttgttttgcattttcctgatgactaaggatgttgaacacttt
tttttaagtgcttttcagccattcaagattcctcagttgagaattcacta
tttagttctgttctcaactttttaatagagttatttggttttctggagtc
taccttcttgagttctttatatattttggatattagccctctattggctg
tagggttgataaatatctattccaaatttgtggtttaccattttgtccta
ttgatagtgttatttgctttacaaagcttttaaatttttgaggccccatt
tgtcaattgttgatcttagagcataagtcattaatgttctattcagcata
ttttcccctgtacctgcatgtgaggcttttctccactttctcttctaata
gattgagtgtatctggttttaagtggatgtcctagatccacttgggattg
aggtttattcagggaaatgagaatgaataaattttcattcttctatatgt
tgactgccagttgaaccagcaccatttgttgaaaatgctatattttttcc
actggatgattttagctcctttgctaaagagcaagtgaccagaggtgtgt
gagttcatttctgggtcttcaattccactccattgacctgtttctttacc
aatatcatgaagcttatatcaccatggctctatagtacagcttgagtcag
tgatggtaattccccagaagttgttttaatgtgagactagttttctgcta
agtaggttttggtatagctatgaattgagaaatgatctcttctactctat
ggaggaatgaaatttgtaattttgatagagaattcatggatatttagata
tggcctgcaaagatgaaactcaactataataatcctggccatccagtaga
tatatgggaggggcat

gaattcaataatactaaagatttcaggatcaggagatatctcactgacag
ctcaaataagaactatggactggcaagctgctgatttctaaatgaaatat
ccctttatttatctatgaacatccaggtggtctagtactgtgagaaaaca
ttactgtttcaaatcggttacccagagtggaatattcctacatgagagaa
agcctgggttgagcagtagacacattagtaataggaattaaaaaatcgta
tggggatttcctctgaaattaaacatcctttcgtgggaattagggaagag
acattcagattcagaatgtaaataaaatttgcaaagctcgggaaactttt
aaaaatatagtgcccctttctacagcccagcatagttgctgcaatagcac
cttatctcaacatgtgcacatgcacacacatgcttatattctaagtatcc
ataagactatctccatacaagaacacttacaaactgatacaatataagat
aagtgaacactaagatatgattgggagtaagtatgagtctaaagaacaag
gctggagaggtagaagcacatgcatgatggtgctctgatatggaagcttg
tgatccttttctaccaagtcctaaggctcagtaaatgagtcagtggattt
tggttttgcatcactaacaataggattttcaagaaggttgggttccagcc
tctgtagcatcagcgctattgagagatggcctgttctaatttcttaatat
atgttctcatgtagtcttgttctcatgttcaggctaggctacaccagaaa
tatagatgaaatgcaatcaggagcctgggattgcatatacttacctttag
agttcctagttctctatatccagccaacagcttccactcatattctttct
gcttctgtttcctagtcagttaaattaggaagtaaagttgttttcattgg
ttttagtgaatttgagtacagtttcaaaggaaactagagtattcaaatac
catggagctaaattaaaatggtgtgagtcatagaaaacatgacacacaat
caagaaatgcaaaatacaaaaaagaatcctaccttcaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_114981338_114982431
seq2: B6Ng01-329C21.g_63_1151 (reverse)

seq1  TTTG-AGGTAGGAT--CTTTTTGTATTTTGCATTTTCTTTGATTGTTGTG  47
      |||| |||||||||   ||||||||||||||||||   ||||||| ||||
seq2  TTTGAAGGTAGGATTCTTTTTTGTATTTTGCATTT--CTTGATTG-TGTG  47

seq1  TTCATGTTTTCTATGGACTCACAACCATTTTTAATTTTAGCTCCATGGTA  97
       ||||||||||||| ||||||| ||||||||  | |||||||||||||||
seq2  -TCATGTTTTCTAT-GACTCAC-ACCATTTT--AATTTAGCTCCATGGTA  92

seq1  TTTGAATACTCTAGTTTCCTTTGAAACTTGTACTCAAATTCACT-AAACC  146
      ||||||||||||||||||||||||||| |||||||||||||||| |||||
seq2  TTTGAATACTCTAGTTTCCTTTGAAAC-TGTACTCAAATTCACTAAAACC  141

seq1  AATGAAAACAACTTTACTTCCTAATTTAACTGACTAGGAAACAGAAGCAG  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAAACAACTTTACTTCCTAATTTAACTGACTAGGAAACAGAAGCAG  191

seq1  AAAGAATATGAGTGGAAGCTGTTGGCTGGATATAGAGAACTAGGAACTCT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAATATGAGTGGAAGCTGTTGGCTGGATATAGAGAACTAGGAACTCT  241

seq1  AAAGGTAAGTATATGCAATCCCAGGCTCCTGATTGCATTTCATCTATATT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTAAGTATATGCAATCCCAGGCTCCTGATTGCATTTCATCTATATT  291

seq1  TCTGGTGTAGCCTAGCCTGAACATGAGAACAAGACTACATGAGAACATAT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTGTAGCCTAGCCTGAACATGAGAACAAGACTACATGAGAACATAT  341

seq1  ATTAAGAAATTAGAACAGGCCATCTCTCAATAGCGCTGATGCTACAGAGG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGAAATTAGAACAGGCCATCTCTCAATAGCGCTGATGCTACAGAGG  391

seq1  CTGGAACCCAACCTTCTTGAAAATCCTATTGTTAGTGATGCAAAACCAAA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAACCCAACCTTCTTGAAAATCCTATTGTTAGTGATGCAAAACCAAA  441

seq1  ATCCACTGACTCATTTACTGAGCCTTAGGACTTGGTAGAAAAGGATCACA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCACTGACTCATTTACTGAGCCTTAGGACTTGGTAGAAAAGGATCACA  491

seq1  AGCTTCCATATCAGAGCACCATCATGCATGTGCTTCTACCTCTCCAGCCT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCCATATCAGAGCACCATCATGCATGTGCTTCTACCTCTCCAGCCT  541

seq1  TGTTCTTTAGACTCATACTTACTCCCAATCATATCTTAGTGTTCACTTAT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTTTAGACTCATACTTACTCCCAATCATATCTTAGTGTTCACTTAT  591

seq1  CTTATATTGTATCAGTTTGTAAGTGTTCTTGTATGGAGATAGTCTTATGG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATATTGTATCAGTTTGTAAGTGTTCTTGTATGGAGATAGTCTTATGG  641

seq1  ATACTTAGAATATAAGCATGTGTGTGCATGTGCACATGTTGAGATAAGGT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTAGAATATAAGCATGTGTGTGCATGTGCACATGTTGAGATAAGGT  691

seq1  GCTATTGCAGCAACTATGCTGGGCTGTAGAAAGGGGCACTATATTTTTAA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATTGCAGCAACTATGCTGGGCTGTAGAAAGGGGCACTATATTTTTAA  741

seq1  AAGTTTCCCGAGCTTTGCAAATTTTATTTACATTCTGAATCTGAATGTCT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTCCCGAGCTTTGCAAATTTTATTTACATTCTGAATCTGAATGTCT  791

seq1  CTTCCCTAATTCCCACGAAAGGATGTTTAATTTCAGAGGAAATCCCCATA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCTAATTCCCACGAAAGGATGTTTAATTTCAGAGGAAATCCCCATA  841

seq1  CGATTTTTTAATTCCTATTACTAATGTGTCTACTGCTCAACCCAGGCTTT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATTTTTTAATTCCTATTACTAATGTGTCTACTGCTCAACCCAGGCTTT  891

seq1  CTCTCATGTAGGAATATTCCACTCTGGGTAACCGATTTGAAACAGTAATG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCATGTAGGAATATTCCACTCTGGGTAACCGATTTGAAACAGTAATG  941

seq1  TTTTCTCACAGTACTAGACCACCTGGATGTTCATAGATAAATAAAGGGAT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCACAGTACTAGACCACCTGGATGTTCATAGATAAATAAAGGGAT  991

seq1  ATTTCATTTAGAAATCAGCAGCTTGCCAGTCCATAGTTCTTATTTGAGCT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCATTTAGAAATCAGCAGCTTGCCAGTCCATAGTTCTTATTTGAGCT  1041

seq1  GTCAGTGAGATATCTCCTGATCCTGAAATCTTTAGTATTATTGAATTC  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTGAGATATCTCCTGATCCTGAAATCTTTAGTATTATTGAATTC  1089


| Home | SequenceCutter | Blast | Download |