BAC Information

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BAC

Clone NameB6Ng01-329I18
Chromosome1 (Build37)
Map Location 52,219,723 - 52,220,788
singlet/doubletsinglet
Overlap genenone
Upstream geneTmeff2, Sdpr, LOC383504, Obfc2a, Myo1b, EG667010, LOC667014, Stat4, LOC100042634, Stat1
Downstream geneGls, LOC546735, Nab1, LOC546736, Gm553, LOC100042094, EG433305, 5330401P04Rik, 2210010L05Rik, Inpp1, Hibch, 1700019D03Rik, Gdf8, 1700019A02Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-329I18.bB6Ng01-329I18.g
ACCGA116481GA116482
length1,2131,072
definitionB6Ng01-329I18.b B6Ng01-329I18.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctcccctggcccctaatacccatgtccattttgtacttcaaatg
tatttaacccatccccaatgttcatttttcaaaattccaagttcaaaagt
ttccctgggactcaaggtaaactcccagctaaaggtattgtttaaaatga
aaataaaataaagtaaatagtagaggggactgggggctggagagaccact
tagcagttaagagcgcttgctccagaggacccatgttcacttcccatcac
tcatttggcagcacaaaatgacctgtaactccagctactgggactatgat
gcgctcttcctgtctccaagggacgtacattcatgtggtgcatatacatg
catgtatacagacaaaacttacacacaaaataaaaataaataaatctgag
gctgtagagagtgcccaatatgcagttcagagtagcagctgctcttccag
aggattcaggttttatttctagcacccacacggtcacagtcatctgtgac
tccagttccagggcacctgatgccctcttctggcctcctctgccatcaga
cactcatgccaacaatatattcatacacataaaataaaacaaaaaattaa
aaataagtctttaataatgtatatagatacagcgtaaacagtcccattcc
aaaagaagaggctgtagaacgacaagaaaaatggaccaaaacaagaacaa
aaccaagcagtgtaaactttaaatcctacaactccatgtctgccatctga
gtgttgttggcattctttgagccccaaaagttttgggtagcctggttctc
ttggctctgcctatttctgcttataagacctctctctaggctagttgtgt
ttcctgctttcaggtgcttcaatagacactccacattcctggcataccta
attctgtgaagtctccattgcatctgtgtctccactttcacagcttcaca
cagcatcctcccagttcagattgtaagggcttccttctctgctatacaga
ttgcctgtccgtgggattttcctttgaatctgggtggaagccgtgtgacc
ccataactcttgtattcttcatgccacagattctgatgcagtgggtaaag
tagacgaactcttgggtgtctggcacatcggagtgattccaagccttgcc
agatggtccctcaagatctttcttctaaggcctatctgcctcggatatac
ctaagaagagatc
gaattccacatgccatttcaaattctaaatatcagtaatagagatggcct
gacagagctcctaaaaccaagcagctttgtggaatataacttctataaga
tgaagatggggttggtatggcgtgcacataactgctgtggagttaaaagc
taactttacacccaagaggaaatgtttcgccaagaacagggcttttgggt
attgattgaaagcatgtgaagaattcggggggagctccagccagtgcaac
tcagatcccagtgtgatcggattggaccagctctcgaggtagatttcagt
gctctgtggaaacatgtcttcattcaaggatactttccatggcatggtgt
aagagcatggtctgagcttctagaggactgagctagcctgtccacttcta
accttcacagctaggtcttcagttctcatcttggtcttgtggtccaaact
tcccacccaattctatgtgcctgcctcacagcaggctggatgtaaaccag
ctacagacttccaacccaacagcccagagaaaaccttagttattaaaaaa
gaaaacactttttctcatagtttgttttcaatacacatatttattatgct
gtaaaaagcaacactacctgatctcatttaaaataagtatttcccaattc
cagaatacttgcaatttatagttttcattttgggaaatgttggaagtaaa
tacattcatagttgtggactccccagcagggatctacatcaaacatcacg
ttatcaagtctctgacagacagctggatcaacagtatacccagctctaca
gctaacgcacgtgtaggcagcactggggtatagcatatcactagacaggg
gtgtcataacccaagacagcacaaacagtggtcataaaaagatctttcaa
agcaacatgatcatgataatggttccaagatacagaaaattatctcagat
tgtaaagtcaaagcaaacagatcctctggagttacagatggtagcagttt
atccgcctcattcgcacactcacagggtctatgatattatcagccagtac
cgaacagcctcgagcaggacct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_52219723_52220788
seq2: B6Ng01-329I18.g_64_1135

seq1  GAATTCCACATGCCATTTCAAATTCTAAATATCAGTAATAGAGATGGCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACATGCCATTTCAAATTCTAAATATCAGTAATAGAGATGGCCT  50

seq1  GACAGAGCTCCTAAAACCAAGCAGCTTTGTGGAATATAACTTCTATAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAGCTCCTAAAACCAAGCAGCTTTGTGGAATATAACTTCTATAAGA  100

seq1  TGAAGATGGGGTTGGTATGGCGTGCACATAACTGCTGTGGAGTTAAAAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGATGGGGTTGGTATGGCGTGCACATAACTGCTGTGGAGTTAAAAGC  150

seq1  TAACTTTACACCCAAGAGGAAATGTTTCGCCAAGAACAGGGCTTTTGGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTTACACCCAAGAGGAAATGTTTCGCCAAGAACAGGGCTTTTGGGT  200

seq1  ATTGATTGAAAGCATGTGAAGAATTCGGGGGGAGCTCCAGCCAGTGCAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATTGAAAGCATGTGAAGAATTCGGGGGGAGCTCCAGCCAGTGCAAC  250

seq1  TCAGATCCCAGTGTGATCGGATTGGACCAGCTCTCGAGGTAGATTTCAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATCCCAGTGTGATCGGATTGGACCAGCTCTCGAGGTAGATTTCAGT  300

seq1  GCTCTGTGGAAACATGTCTTCATTCAAGGATACTTTCCATGGCATGGTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGTGGAAACATGTCTTCATTCAAGGATACTTTCCATGGCATGGTGT  350

seq1  AAGAGCATGGTCTGAGCTTCTAGAGGACTGAGCTAGCCTGTCCACTTCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCATGGTCTGAGCTTCTAGAGGACTGAGCTAGCCTGTCCACTTCTA  400

seq1  ACCTTCACAGCTAGGTCTTCAGTTCTCATCTTGGTCTTGTGGTCCAAACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCACAGCTAGGTCTTCAGTTCTCATCTTGGTCTTGTGGTCCAAACT  450

seq1  TCCCACCCAATTCTATGTGCCTGCCTCACAGCAGGCTGGATGTAAACCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACCCAATTCTATGTGCCTGCCTCACAGCAGGCTGGATGTAAACCAG  500

seq1  CTACAGACTTCCAACCCAACAGCCCAGAGAAAACCTTAGTTATTAAAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGACTTCCAACCCAACAGCCCAGAGAAAACCTTAGTTATTAAAAAA  550

seq1  GAAAACACTTTTTCTCATAGTTTGTTTTCAATACACATATTTATTATGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACACTTTTTCTCATAGTTTGTTTTCAATACACATATTTATTATGCT  600

seq1  GTAAAAAGCAACACTACCTGATCTCATTTAAAATAAGTATTTCCCAATTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAAAGCAACACTACCTGATCTCATTTAAAATAAGTATTTCCCAATTC  650

seq1  CAGAATACTTGCAATTTATAGTTTTCATTTTGGGAAATGTTGGAAGTAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATACTTGCAATTTATAGTTTTCATTTTGGGAAATGTTGGAAGTAAA  700

seq1  TACATTCATAGTTGTGGACTCCCCAGCAGGGATCTACATCAAACATCAGG  750
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TACATTCATAGTTGTGGACTCCCCAGCAGGGATCTACATCAAACATCACG  750

seq1  TTATCAAGTCCCTGACGGACAGCTGGATCAACAGTATACCCAGCTCTACA  800
      |||||||||| ||||| |||||||||||||||||||||||||||||||||
seq2  TTATCAAGTCTCTGACAGACAGCTGGATCAACAGTATACCCAGCTCTACA  800

seq1  GCTAAAGCACGTGTAGGCAGCACTGGGGTATAGCATATCACCAGACAGGG  850
      ||||| ||||||||||||||||||||||||||||||||||| ||||||||
seq2  GCTAACGCACGTGTAGGCAGCACTGGGGTATAGCATATCACTAGACAGGG  850

seq1  GTGTCAGAA-CCAAGACAGCAGAAACAGTGG-CATAAAAAGATC-TTCAA  897
      |||||| || ||||||||||| ||||||||| |||||||||||| |||||
seq2  GTGTCATAACCCAAGACAGCACAAACAGTGGTCATAAAAAGATCTTTCAA  900

seq1  AGCAACATGATCATG-TAATGGTTCCAGGATACAGAAAAATTAGCTAAGA  946
      ||||||||||||||| ||||||||||| ||||||| ||||||| || |||
seq2  AGCAACATGATCATGATAATGGTTCCAAGATACAG-AAAATTATCTCAGA  949

seq1  TTGTAAAGCCAAAACAAACAGAT-CTTTGGAGTTTACAGATGGTAGCAGT  995
      |||||||| |||| ||||||||| || ||||| |||||||||||||||||
seq2  TTGTAAAGTCAAAGCAAACAGATCCTCTGGAG-TTACAGATGGTAGCAGT  998

seq1  T--AGCGGCTCATTCACACACACACAGGGTCCTTGTTATTATCAGCCAGT  1043
      |    || ||||||| ||||| |||||||||  || ||||||||||||||
seq2  TTATCCGCCTCATTCGCACACTCACAGGGTCTATGATATTATCAGCCAGT  1048

seq1  AGCGAACAGCC-AGAGCAAGACCT  1066
      | |||||||||  ||||| |||||
seq2  ACCGAACAGCCTCGAGCAGGACCT  1072