BAC Information

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BAC

Clone NameB6Ng01-329L11
Chromosome1 (Build37)
Map Location 155,976,618 - 156,143,783
singlet/doubletdoublet
Overlap genenone
Upstream geneLamc2, Lamc1, EG667795, EG626058, 1700012A16Rik, Dhx9, Npl, LOC626096, Rgs8, Rgs16, Rnasel, LOC100043347, Rgsl1, 5830403L16Rik, EG433365, Teddm1, LOC100043357, Glul, LOC100043359
Downstream geneCacna1e, LOC671336, Ier5, Mr1, Stx6, EG667867, BC034090, Xpr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-329L11.bB6Ng01-329L11.g
ACCGA116597GA116598
length1,0601,096
definitionB6Ng01-329L11.b B6Ng01-329L11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(156,142,723 - 156,143,783)(155,976,618 - 155,977,714)
sequence
gaattcccttgggctctaagggtatcagcgtctgatattaggccatgggt
taatggggcagggtctaggtaggagaactccatatgggaggtagttggag
caatactgaattttggattagttagctagtatatgcaaagcaagcttgta
ggcatgccctttcctatctctaggtgttggctagttcaggaaacaacggt
ccctgtggaatcagcaaggttcaggatgttaaaacacaagatagaaatca
agaaaaaaaaacgtggttggcacagaggagagttgcttgaatgccacaca
tcaggaagcatgcctctctccaaggtcctgccttaggcatcttttaacag
actaaagtactctgactcatcctagaaacactccatttttctctgatttg
catctaaaaattaaaatatccaaattcagcagtgcgtttggaattcacac
atctttgcatgtgaggctaacttccctggatcaagcaaaacttccgcttt
ctaagaagaatctttatgtctcgccaaatttctggaaacggggttagaga
tcccgaactcacgtatgactagccaattggatccaccagttacatggctt
gtactaggaaatcaatcaagcctatccgaagccccatcttacctgacatc
taataataaggccaagtattctctatgccattagctctcaacagcaggtg
cagattaaaatcttctggtgagtttttaaagtcctctgacatccagaccc
tgtggtggttcaattaaatcaattgtcgaagatgtggtttaggttgcagc
atttctcaaatttttttttcatgtgattctaatgttcattcaaggttgag
acccattataccaactgaattattaaagaacttgacagtaggccattgga
gttgttggcttacaaaaaaatggttgatgtaaattaaaatgctgtaaaat
ttgaaatcatcttggttttaggacacagcgttctgtcctaaaggagcttg
attgaagtgtttagtgtctgtggcttcagtggcttcttttcccttttgct
tgtgtggata
gaattcaccaggagttcctgcttagattagaattaagatgtttttttcct
cttctctgaaggtgagacaggaacttatggtcatacaagcacacctggtg
aacgttttaactgttggggttctattgtggttgctattggatatttgctg
tgtatggccaccccctgctctctgctacagggaagggtttgtctaaatga
acttgcccaagggtacagtaaacagctaaccaaggagtaaataattcact
tagttgtcaactccaagatgatactgtgtatgtttattgggattgtcaca
ctgcacgcctttgtggtcgtcacactgtgtggctttatgactgtcacact
gtgtgcctttgaggttctggaatgggtcctatcatgtttgagaaaggatt
ctaaggtgttgcagtctgagaaggaaaattttagcatttattagtgacat
ctgtatgggagcaggagggaggcaaactgctatcaactgggctcttggca
ccttatgcctgatgctatactttctgccccagcaatggcaggcaccttct
tccttaccccctccaactcaacagttcttagcttgcagatttcattgatg
cttggctcgatttgtttttttatccccatttgagatctatgtccatcagt
agctcttgtgaaatctccttcccttcagactcccaattttaaacttcatc
ccggccacctttaaaatgttattattttaaaattgttattattatttaaa
actttgcgtttttgtgtttttctgtgtgaaggtgtgtgtgtgtacacttt
gaggccagaggccaaccctatcgctctttgtgagtaccagtcaccttatt
tttaagagaggttcattcatcagctgggctgccctactgcgctaggctag
ctggttaagaagatcaggaatctaccctctcctttcccccagcagtcaca
accacatcctgtttttcattcatttgttttttgctttgtctgtttatttt
ttattgaatttaaaaattaaaatatattagaacaattccgccattcccta
tattttttttcagtctctccttggcccctctcctcctcaaacttga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_156142723_156143783
seq2: B6Ng01-329L11.b_45_1104 (reverse)

seq1  TATCCACAC-AGCAAAAGGGAAAGGAAGCCACTGGAAGCCACAGACACTA  49
      ||||||||| ||||||||||||| ||||||||| ||||||||||||||||
seq2  TATCCACACAAGCAAAAGGGAAAAGAAGCCACT-GAAGCCACAGACACTA  49

seq1  AACACTTCAATCCAAGCTCCTTTAGGACAAGAACGCTGTGTCCTAAAACC  99
      ||||||||||| |||||||||||||||| |||||||||||||||||||||
seq2  AACACTTCAAT-CAAGCTCCTTTAGGAC-AGAACGCTGTGTCCTAAAACC  97

seq1  AAGATGATTTCAAATTTTACAGCATTTTAATTTACATCAACCATTTTTTT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGATTTCAAATTTTACAGCATTTTAATTTACATCAACCATTTTTTT  147

seq1  GTAAGCCAACAACTCCAATGGCCTACTGTCAAGTTCTTTAATAATTCAGT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGCCAACAACTCCAATGGCCTACTGTCAAGTTCTTTAATAATTCAGT  197

seq1  TGGTATAATGGGTCTCAACCTTGAATGAACATTAGAATCACATG-AAAAA  248
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TGGTATAATGGGTCTCAACCTTGAATGAACATTAGAATCACATGAAAAAA  247

seq1  AAATTTGAGAAATGCTGCAACCTAAACCACATCTTCGACAATTGATTTAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTGAGAAATGCTGCAACCTAAACCACATCTTCGACAATTGATTTAA  297

seq1  TTGAACCACCACAGGGTCTGGATGTCAGAGGACTTTAAAAACTCACCAGA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACCACCACAGGGTCTGGATGTCAGAGGACTTTAAAAACTCACCAGA  347

seq1  AGATTTTAATCTGCACCTGCTGTTGAGAGCTAATGGCATAGAGAATACTT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTTAATCTGCACCTGCTGTTGAGAGCTAATGGCATAGAGAATACTT  397

seq1  GGCCTTATTATTAGATGTCAGGTAAGATGGGGCTTCGGATAGGCTTGATT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTATTATTAGATGTCAGGTAAGATGGGGCTTCGGATAGGCTTGATT  447

seq1  GATTTCCTAGTACAAGCCATGTAACTGGTGGATCCAATTGGCTAGTCATA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCCTAGTACAAGCCATGTAACTGGTGGATCCAATTGGCTAGTCATA  497

seq1  CGTGAGTTCGGGATCTCTAACCCCGTTTCCAGAAATTTGGCGAGACATAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGAGTTCGGGATCTCTAACCCCGTTTCCAGAAATTTGGCGAGACATAA  547

seq1  AGATTCTTCTTAGAAAGCGGAAGTTTTGCTTGATCCAGGGAAGTTAGCCT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCTTCTTAGAAAGCGGAAGTTTTGCTTGATCCAGGGAAGTTAGCCT  597

seq1  CACATGCAAAGATGTGTGAATTCCAAACGCACTGCTGAATTTGGATATTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGCAAAGATGTGTGAATTCCAAACGCACTGCTGAATTTGGATATTT  647

seq1  TAATTTTTAGATGCAAATCAGAGAAAAATGGAGTGTTTCTAGGATGAGTC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTTAGATGCAAATCAGAGAAAAATGGAGTGTTTCTAGGATGAGTC  697

seq1  AGAGTACTTTAGTCTGTTAAAAGATGCCTAAGGCAGGACCTTGGAGAGAG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTACTTTAGTCTGTTAAAAGATGCCTAAGGCAGGACCTTGGAGAGAG  747

seq1  GCATGCTTCCTGATGTGTGGCATTCAAGCAACTCTCCTCTGTGCCAACCA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCTTCCTGATGTGTGGCATTCAAGCAACTCTCCTCTGTGCCAACCA  797

seq1  CGTTTTTTTTTCTTGATTTCTATCTTGTGTTTTAACATCCTGAACCTTGC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTTTTTTTTCTTGATTTCTATCTTGTGTTTTAACATCCTGAACCTTGC  847

seq1  TGATTCCACAGGGACCGTTGTTTCCTGAACTAGCCAACACCTAGAGATAG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCCACAGGGACCGTTGTTTCCTGAACTAGCCAACACCTAGAGATAG  897

seq1  GAAAGGGCATGCCTACAAGCTTGCTTTGCATATACTAGCTAACTAATCCA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGGCATGCCTACAAGCTTGCTTTGCATATACTAGCTAACTAATCCA  947

seq1  AAATTCAGTATTGCTCCAACTACCTCCCATATGGAGTTCTCCTACCTAGA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCAGTATTGCTCCAACTACCTCCCATATGGAGTTCTCCTACCTAGA  997

seq1  CCCTGCCCCATTAACCCATGGCCTAATATCAGACGCTGATACCCTTAGAG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCCCCATTAACCCATGGCCTAATATCAGACGCTGATACCCTTAGAG  1047

seq1  CCCAAGGGAATTC  1061
      |||||||||||||
seq2  CCCAAGGGAATTC  1060

seq1: chr1_155976618_155977714
seq2: B6Ng01-329L11.g_66_1161

seq1  GAATTCACCAGGAGTTCCTGCTTAGATTAGAATTAAGATGTTTTTTTCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCAGGAGTTCCTGCTTAGATTAGAATTAAGATGTTTTTTTCCT  50

seq1  CTTCTCTGAAGGTGAGACAGGAACTTATGGTCATACAAGCACACCTGGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCTGAAGGTGAGACAGGAACTTATGGTCATACAAGCACACCTGGTG  100

seq1  AACGTTTTAACTGTTGGGGTTCTATTGTGGTTGCTATTGGATATTTGCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGTTTTAACTGTTGGGGTTCTATTGTGGTTGCTATTGGATATTTGCTG  150

seq1  TGTATGGCCACCCCCTGCTCTCTGCTACAGGGAAGGGTTTGTCTAAATGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGGCCACCCCCTGCTCTCTGCTACAGGGAAGGGTTTGTCTAAATGA  200

seq1  ACTTGCCCAAGGGTACAGTAAACAGCTAACCAAGGAGTAAATAATTCACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCCCAAGGGTACAGTAAACAGCTAACCAAGGAGTAAATAATTCACT  250

seq1  TAGTTGTCAACTCCAAGATGATACTGTGTATGTTTATTGGGATTGTCACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTGTCAACTCCAAGATGATACTGTGTATGTTTATTGGGATTGTCACA  300

seq1  CTGCACGCCTTTGTGGTCGTCACACTGTGTGGCTTTATGACTGTCACACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACGCCTTTGTGGTCGTCACACTGTGTGGCTTTATGACTGTCACACT  350

seq1  GTGTGCCTTTGAGGTTCTGGAATGGGTCCTATCATGTTTGAGAAAGGATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCCTTTGAGGTTCTGGAATGGGTCCTATCATGTTTGAGAAAGGATT  400

seq1  CTAAGGTGTTGCAGTCTGAGAAGGAAAATTTTAGCATTTATTAGTGACAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGGTGTTGCAGTCTGAGAAGGAAAATTTTAGCATTTATTAGTGACAT  450

seq1  CTGTATGGGAGCAGGAGGGAGGCAAACTGCTATCAACTGGGCTCTTGGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATGGGAGCAGGAGGGAGGCAAACTGCTATCAACTGGGCTCTTGGCA  500

seq1  CCTTATGCCTGATGCTATACTTTCTGCCCCAGCAATGGCAGGCACCTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTATGCCTGATGCTATACTTTCTGCCCCAGCAATGGCAGGCACCTTCT  550

seq1  TCCTTACCCCCTCCAACTCAACAGTTCTTAGCTTGCAGATTTCATTGATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTACCCCCTCCAACTCAACAGTTCTTAGCTTGCAGATTTCATTGATG  600

seq1  CTTGGCTCGATTTGTTTTTTTATCCCCATTTGAGATCTATGTCCATCAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCTCGATTTGTTTTTTTATCCCCATTTGAGATCTATGTCCATCAGT  650

seq1  AGCTCTTGTGAAATCTCCTTCCCTTCAGACTCCCAATTTTAAACTTCATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTTGTGAAATCTCCTTCCCTTCAGACTCCCAATTTTAAACTTCATC  700

seq1  CCGGCCACCTTTAAAATGTTATTATTTTAAAATTGTTATTATTATTTAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGCCACCTTTAAAATGTTATTATTTTAAAATTGTTATTATTATTTAAA  750

seq1  ACTTTGCG-TTTTGTGTTTTTCTGTGTGAAGGTGTGTGTGTGTACACTTT  799
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGCGTTTTTGTGTTTTTCTGTGTGAAGGTGTGTGTGTGTACACTTT  800

seq1  GAGGCCAGAGGCCAACCCTATCGCTCTTTGTGAGTACCAGTCACCTTATT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCAGAGGCCAACCCTATCGCTCTTTGTGAGTACCAGTCACCTTATT  850

seq1  TTTAAGAGAGGTTCATTCATCAGGCTGGGCTGCCCTACTGCGCTAGGCTA  899
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TTTAAGAGAGGTTCATTCATCA-GCTGGGCTGCCCTACTGCGCTAGGCTA  899

seq1  GCTGGTTAAGAAGATCAGGAATCTACCCCCTCCTTTCCCCCAGCAGTCAC  949
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GCTGGTTAAGAAGATCAGGAATCTACCCTCTCCTTTCCCCCAGCAGTCAC  949

seq1  AACCACATCCTGTTTTTTCATTCATTTGTTTTTTGCTTTGTCTTGTTTTA  999
      |||||||||||| ||||||||||||||||||||||||||||||   ||||
seq2  AACCACATCCTG-TTTTTCATTCATTTGTTTTTTGCTTTGTCT--GTTTA  996

seq1  TTTTTTATTGAATTTTAAAAATTAAAATATAATTAGAAC-ATTCCGCCAT  1048
      |||||||||||| ||||||||||||||||| |||||||| ||||||||||
seq2  TTTTTTATTGAA-TTTAAAAATTAAAATAT-ATTAGAACAATTCCGCCAT  1044

seq1  TCCCTATA--TTTTTTCAGTCTCTCCCTTGCCCCTCTCCCTCTC-AACTT  1095
      ||||||||  |||||||||||||||| | ||||||||||  ||| |||||
seq2  TCCCTATATTTTTTTTCAGTCTCTCCTTGGCCCCTCTCCTCCTCAAACTT  1094

seq1  GA  1097
      ||
seq2  GA  1096