BAC Information

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BAC

Clone NameB6Ng01-329O17
Chromosome1 (Build37)
Map Location 112,114,542 - 112,158,906
singlet/doubletdoublet
Overlap genenone
Upstream geneEG666508, Cdh7
Downstream geneLOC100041429, EG626652, Cdh19
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-329O17.bB6Ng01-329O17.g
ACCGA116746GA116747
length814855
definitionB6Ng01-329O17.b B6Ng01-329O17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(112,158,093 - 112,158,906)(112,114,542 - 112,115,396)
sequence
gaattctcactggagatgttgaaaattctggacattattcacttatggag
caggtgacgttctatttcttcaatatttttgtgatactaaagcctacttt
tagaaagtaaaatgtatttacatcttacaaatttatgaaaagtgaagcgc
gagatatggtaaggtaggtaaaaggaatgggtaatcttttagaggaccca
gatataattcctgcatgcatccagaaggtaataaccatggataccttcag
cctcagaggatccaatgacctgcttgacctccatgagcaccaggcattca
attgttgcatagacctacatgaagccaaaatgccacacatataaaataaa
aatatatgtcttaaattattttttaacttataaaaagttatattgactca
tatatatatataatgattagaaaacaagattattgatcaggtacaaattg
tttgaagggaattaaaaactacaaaattaattctatttgcattacaatgt
ttctttcaaatgatattatattcattatcataaaagcatatatatttgtg
tgtgtgtatatacatatatatatgctttttaaaatgatctttcatatata
tatatatgattttaaaagatcatttggaaaataaggagttgtaattattt
attttttaaacttaaattcgtaattgaaaatatgaaattttctacctcct
gctcactctctggctcattctgtctttaaaagcatctatctatctagaga
tagagatagagatagagatagagatagagatagagatagagatagagata
gagatagagataga

gaattctagtgaacagagtattttcaatttcattaaccataaaatgaagt
tcagcaaagcactgtaatattggaagaatttgtaatttttgcataggaac
agatcatataatttcatagttgctgcagatttctcaatacaacatttatg
gttgtctataacttaatgctcattgattagagaatgagtgtgattctaag
agaaggagtaatgctttctattcagtagactctcacgttttattgtttat
aatcttatttagcagagcattcattacctcacagtcattttaaggattta
gacacttgagccaggtgtggtgttgcacgcttgtaatcctagcacttggg
aggcagaggcaggcggatttctgagttcgaggccagcctggtgtacaaag
tgagttccaggacaggcagggctatacagagaaaatctgtcttgaaaaac
aaaaaataaaaaacaaaaaagatttatacacttaacactattagtaggag
aaggagctactttcggttctgcttggcaacaaataataggggtcagtcca
atttgagatgatctacaaggtttcgaaaggaagtttgattgacacagcca
gatgaaggtccatacactgattaaatttcattatttgcaagtgtaatgag
gaaatgccaaaattaataaactagaaaggttattatgtttaggataatgg
tattaaacttatttaatatgagagaataagatcctaagttgaataagaga
aagagtgggaaagatgtaatataagaggtttttgttgttgtgtttgtttc
aaatttaaagctttttttttgttttgcgtgtgtgtgtgtgtgtgtgtgtg
tgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_112158093_112158906
seq2: B6Ng01-329O17.b_45_858 (reverse)

seq1  TCTATCTCTATCTCTATCTCTATCTCTATCTCTATCTCTATCTCTATCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCTCTATCTCTATCTCTATCTCTATCTCTATCTCTATCTCTATCTC  50

seq1  TATCTCTATCTCTATCTCTAGATAGATAGATGCTTTTAAAGACAGAATGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCTATCTCTATCTCTAGATAGATAGATGCTTTTAAAGACAGAATGA  100

seq1  GCCAGAGAGTGAGCAGGAGGTAGAAAATTTCATATTTTCAATTACGAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGAGAGTGAGCAGGAGGTAGAAAATTTCATATTTTCAATTACGAATT  150

seq1  TAAGTTTAAAAAATAAATAATTACAACTCCTTATTTTCCAAATGATCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTTAAAAAATAAATAATTACAACTCCTTATTTTCCAAATGATCTTT  200

seq1  TAAAATCATATATATATATATGAAAGATCATTTTAAAAAGCATATATATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATCATATATATATATATGAAAGATCATTTTAAAAAGCATATATATA  250

seq1  TGTATATACACACACACAAATATATATGCTTTTATGATAATGAATATAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATATACACACACACAAATATATATGCTTTTATGATAATGAATATAAT  300

seq1  ATCATTTGAAAGAAACATTGTAATGCAAATAGAATTAATTTTGTAGTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTTGAAAGAAACATTGTAATGCAAATAGAATTAATTTTGTAGTTTT  350

seq1  TAATTCCCTTCAAACAATTTGTACCTGATCAATAATCTTGTTTTCTAATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCCCTTCAAACAATTTGTACCTGATCAATAATCTTGTTTTCTAATC  400

seq1  ATTATATATATATATGAGTCAATATAACTTTTTATAAGTTAAAAAATAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATATATATATATGAGTCAATATAACTTTTTATAAGTTAAAAAATAAT  450

seq1  TTAAGACATATATTTTTATTTTATATGTGTGGCATTTTGGCTTCATGTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGACATATATTTTTATTTTATATGTGTGGCATTTTGGCTTCATGTAG  500

seq1  GTCTATGCAACAATTGAATGCCTGGTGCTCATGGAGGTCAAGCAGGTCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTATGCAACAATTGAATGCCTGGTGCTCATGGAGGTCAAGCAGGTCAT  550

seq1  TGGATCCTCTGAGGCTGAAGGTATCCATGGTTATTACCTTCTGGATGCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATCCTCTGAGGCTGAAGGTATCCATGGTTATTACCTTCTGGATGCAT  600

seq1  GCAGGAATTATATCTGGGTCCTCTAAAAGATTACCCATTCCTTTTACCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGAATTATATCTGGGTCCTCTAAAAGATTACCCATTCCTTTTACCTA  650

seq1  CCTTACCATATCTCGCGCTTCACTTTTCATAAATTTGTAAGATGTAAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTACCATATCTCGCGCTTCACTTTTCATAAATTTGTAAGATGTAAATA  700

seq1  CATTTTACTTTCTAAAAGTAGGCTTTAGTATCACAAAAATATTGAAGAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTACTTTCTAAAAGTAGGCTTTAGTATCACAAAAATATTGAAGAAA  750

seq1  TAGAACGTCACCTGCTCCATAAGTGAATAATGTCCAGAATTTTCAACATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACGTCACCTGCTCCATAAGTGAATAATGTCCAGAATTTTCAACATC  800

seq1  TCCAGTGAGAATTC  814
      ||||||||||||||
seq2  TCCAGTGAGAATTC  814


seq1: chr1_112114542_112115396
seq2: B6Ng01-329O17.g_64_918

seq1  GAATTCTAGTGAACAGAGTATTTTCAATTTCATTAACCATAAAATGAAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGTGAACAGAGTATTTTCAATTTCATTAACCATAAAATGAAGT  50

seq1  TCAGCAAAGCACTGTAATATTGGAAGAATTTGTAATTTTTGCATAGGAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCAAAGCACTGTAATATTGGAAGAATTTGTAATTTTTGCATAGGAAC  100

seq1  AGATCATATAATTTCATAGTTGCTGCAGATTTCTCAATACAACATTTATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCATATAATTTCATAGTTGCTGCAGATTTCTCAATACAACATTTATG  150

seq1  GTTGTCTATAACTTAATGCTCATTGATTAGAGAATGAGTGTGATTCTAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTCTATAACTTAATGCTCATTGATTAGAGAATGAGTGTGATTCTAAG  200

seq1  AGAAGGAGTAATGCTTTCTATTCAGTAGACTCTCACGTTTTATTGTTTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGAGTAATGCTTTCTATTCAGTAGACTCTCACGTTTTATTGTTTAT  250

seq1  AATCTTATTTAGCAGAGCATTCATTACCTCACAGTCATTTTAAGGATTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTATTTAGCAGAGCATTCATTACCTCACAGTCATTTTAAGGATTTA  300

seq1  GACACTTGAGCCAGGTGTGGTGTTGCACGCTTGTAATCCTAGCACTTGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTTGAGCCAGGTGTGGTGTTGCACGCTTGTAATCCTAGCACTTGGG  350

seq1  AGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTGTACAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTGTACAAAG  400

seq1  TGAGTTCCAGGACAGGCAGGGCTATACAGAGAAAATCTGTCTTGAAAAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTCCAGGACAGGCAGGGCTATACAGAGAAAATCTGTCTTGAAAAAC  450

seq1  AAAAAATAAAAAACAAAAAAGATTTATACACTTAACACTATTAGTAGGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATAAAAAACAAAAAAGATTTATACACTTAACACTATTAGTAGGAG  500

seq1  AAGGAGCTACTTTCGGTTCTGCTTGGCAACAAATAATAGGGGTCAGTCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGCTACTTTCGGTTCTGCTTGGCAACAAATAATAGGGGTCAGTCCA  550

seq1  ATTTGAGATGATCTACAAGGTTTCGAAAGGAAGTTTGATTGACACAGCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAGATGATCTACAAGGTTTCGAAAGGAAGTTTGATTGACACAGCCA  600

seq1  GATGAAGGTCCATACACTGATTAAATTTCATTATTTGCAAGTGTAATGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAAGGTCCATACACTGATTAAATTTCATTATTTGCAAGTGTAATGAG  650

seq1  GAAATGCCAAAATTAATAAACTAGAAAGGTTATTATGTTTAGGATAATGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGCCAAAATTAATAAACTAGAAAGGTTATTATGTTTAGGATAATGG  700

seq1  TATTAAACTTATTTAATATGAGAGAATAAGATCCTAAGTTGAATAAGAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAACTTATTTAATATGAGAGAATAAGATCCTAAGTTGAATAAGAGA  750

seq1  AAGAGTGGGAAAGATGTAATATAAGAGGTTTTTGTTGTTGTGTTTGTTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTGGGAAAGATGTAATATAAGAGGTTTTTGTTGTTGTGTTTGTTTC  800

seq1  AAATTTAAAGCTTTTTTTTTGTTTTGCGTGTGTGTGTGTGTGTGTGTGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTAAAGCTTTTTTTTTGTTTTGCGTGTGTGTGTGTGTGTGTGTGTG  850

seq1  TGTGT  855
      |||||
seq2  TGTGT  855


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