BAC Information

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BAC

Clone NameB6Ng01-329P07
Chromosome1 (Build37)
Map Location 58,451,846 - 58,622,769
singlet/doubletdoublet
Overlap geneBzw1, Clk1, Ppil3, Nif3l1, Orc2l, BC049806
Upstream gene1110034B05Rik, 9430016H08Rik, LOC667339, 2810022L02Rik, Kctd18, Sgol2, Aox1, Aox3, Aox4, Aox3l1, EG628262
Downstream geneNdufb3, EG667397, Als2cr12, Cflar, LOC100042431, Casp8, EG667419, Trak2, Als2cr2, 4930408G06Rik, EG667447, Als2cr11, Als2cr4, Mpp4, Als2, Als2cr7, Fzd7, Gm973
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-329P07.bB6Ng01-329P07.g
ACCGA116770GA116771
length1,1191,011
definitionB6Ng01-329P07.b B6Ng01-329P07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,621,647 - 58,622,769)(58,451,846 - 58,452,849)
sequence
gaattccacacttgaactctgccgcattcctgtgccacctcctcctttag
aaaactgatcctaagacaggtaaaattatgaccttaacttaaaaaaaaaa
agatgaagaatacatttcccatatgattaaacatgttaagaatttttggt
agtctttggtaagtagctttatttattaaacagttttatcttacgtgatc
acctctttctgtctttgaattcagttttgaattattttagtaattacatt
taagaaatatgttatctgaattttactttgatttatttcatttattcagc
atgattgtgatatcagggtacatctggataactgttggccaaagcaaatt
tttgtgactgacgactgtgttctctttctgttataataatcacatgtaga
ttctgattatttgagatatggcaaataaactgctctttctagtgtttatt
aataatgtacaaatatgcaaagtcaaagccaggtgttgttttatgcctgt
aatcctactacctaggaggtagagacaggatgatcaggagttcaattcaa
ggtcatccttagcaagagggactagaagagaaaaaagagcccaaataaat
acttcttcccaattctatttcgctttaacgcaaggtcttgcgcacacccc
gacagtcccactgttttcatagaaaacacatgccaggacaggtcaagagg
agaatggggagtaagcagaatcactgagttgaatctacccaggaaaacag
ttggttagaattcagaaatggctgatagggccatgttaatgaaagcctta
tactatcaaagttcaaaatagggacaaagagcaagaaaattgcaaaggca
gtgctcctgttacatggagtctgacgaccagatccagcatcctgacatat
gttttatgaagtctccagaatgggtgaaggggggagggggctcaatgcca
tcagccttatacccataccaactaggaatagacattatataaattcacat
catagaacgtacaccacatgtcaccacactttcaacctaatggagttctg
acactatggtgatatgtatgcattcattactatctcccccgcccatgagg
agttaatgattttggctgg
gaattctgcctgcttctgcatcccaagtgctgggattaaaggtgtgcact
gccaccaccacccagcaacaaaaaaaagtttaaatggtattctttgaaaa
ctggcattggccgggcatggtggcatacatctttaattcttgcagttgga
gaggccagtaaatagaggtctagttagtgaattccaggccagctagggct
acatagggctgcttcaaaaagatgaagcacacattaacctgttgagtagt
tttgaggaaatggagaatgggctaactactggttttaaggttgtttctgg
ttttctacctttcatagaaagtttgacacagatgacagcatctttgtata
ttctccatagtctgtcccccggttgtgtattccagcctttggtaggtata
gttttagccaatagattttcttaaactaaagcagtttatcaataatgaag
gaaattggggctggagagatggctcagccagttaagggcactgactgttc
ttccaggtgttctgagttcaaatcccagtaatcacatggtgacttacaac
cgtccatgagatctgacgccccctcctggtgtatctcaagtcagctacag
tgtacttacatataataaataaatctttaaaagaaaataaggaaactatt
ctctgagtttgtagattcctagcactatcttgataaaattgtataacttt
tattcttagcatctgggagatatcacttaaatccagataaagtggtgtgg
catccgcctgtaatccagcactcatactacagaggcagaagagttgccaa
tgttaactgggaccatcctaggatgcaaaaccagtctttgagtgcctccc
ccaataacaaaaaaaggggggggggcttatggcctggttctagggataat
catccagggttggctggagcttagggggttttaaagacaaggactttcag
taaaaccaagagaattcttgggaaccattttcactctcatggctggtata
aaattcaggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_58621647_58622769
seq2: B6Ng01-329P07.b_45_1163 (reverse)

seq1  CCAGCCAAATTCATT-ACTCCTCATGGGGCGGGGGAGATAGTAAAGGAAT  49
      ||||||||| ||||| ||||||||| |||||||||||||||| || ||||
seq2  CCAGCCAAAATCATTAACTCCTCAT-GGGCGGGGGAGATAGT-AATGAAT  48

seq1  GCATACATATACAACCATAGTGTCAGAACTCAATTAGGTTGAAAAGTGT-  98
      ||||||||||   |||||||||||||||||| ||||||||| ||||||| 
seq2  GCATACATAT--CACCATAGTGTCAGAACTCCATTAGGTTG-AAAGTGTG  95

seq1  GTGACATGTGGTTGTACGTTCTATGATGGTGAATTTATATAATGTCTATT  148
      ||||||||||| ||||||||||||||| ||||||||||||||||||||||
seq2  GTGACATGTGG-TGTACGTTCTATGAT-GTGAATTTATATAATGTCTATT  143

seq1  CCTTAGTTGGTATGGGTATAAGGCTGATGGCATTGAGCCCCCTCCCCC--  196
      || |||||||||||||||||||||||||||||||||||||||||||||  
seq2  CC-TAGTTGGTATGGGTATAAGGCTGATGGCATTGAGCCCCCTCCCCCCT  192

seq1  TCACCCATTCTGGAGACTTCATAAAACATATGTCAGGATGCTGGATCTGG  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCCATTCTGGAGACTTCATAAAACATATGTCAGGATGCTGGATCTGG  242

seq1  TCGTCAGACTCCATGTAACAGGAGCACTGCCTTTGCAATTTTCTTGCTCT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTCAGACTCCATGTAACAGGAGCACTGCCTTTGCAATTTTCTTGCTCT  292

seq1  TTGTCCCTATTTTGAACTTTGATAGTATAAGGCTTTCATTAACATGGCCC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCCTATTTTGAACTTTGATAGTATAAGGCTTTCATTAACATGGCCC  342

seq1  TATCAGCCATTTCTGAATTCTAACCAACTGTTTTCCTGGGTAGATTCAAC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGCCATTTCTGAATTCTAACCAACTGTTTTCCTGGGTAGATTCAAC  392

seq1  TCAGTGATTCTGCTTACTCCCCATTCTCCTCTTGACCTGTCCTGGCATGT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGATTCTGCTTACTCCCCATTCTCCTCTTGACCTGTCCTGGCATGT  442

seq1  GTTTTCTATGAAAACAGTGGGACTGTCGGGGTGTGCGCAAGACCTTGCGT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCTATGAAAACAGTGGGACTGTCGGGGTGTGCGCAAGACCTTGCGT  492

seq1  TAAAGCGAAATAGAATTGGGAAGAAGTATTTATTTGGGCTCTTTTTTCTC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCGAAATAGAATTGGGAAGAAGTATTTATTTGGGCTCTTTTTTCTC  542

seq1  TTCTAGTCCCTCTTGCTAAGGATGACCTTGAATTGAACTCCTGATCATCC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGTCCCTCTTGCTAAGGATGACCTTGAATTGAACTCCTGATCATCC  592

seq1  TGTCTCTACCTCCTAGGTAGTAGGATTACAGGCATAAAACAACACCTGGC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCTACCTCCTAGGTAGTAGGATTACAGGCATAAAACAACACCTGGC  642

seq1  TTTGACTTTGCATATTTGTACATTATTAATAAACACTAGAAAGAGCAGTT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACTTTGCATATTTGTACATTATTAATAAACACTAGAAAGAGCAGTT  692

seq1  TATTTGCCATATCTCAAATAATCAGAATCTACATGTGATTATTATAACAG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGCCATATCTCAAATAATCAGAATCTACATGTGATTATTATAACAG  742

seq1  AAAGAGAACACAGTCGTCAGTCACAAAAATTTGCTTTGGCCAACAGTTAT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGAACACAGTCGTCAGTCACAAAAATTTGCTTTGGCCAACAGTTAT  792

seq1  CCAGATGTACCCTGATATCACAATCATGCTGAATAAATGAAATAAATCAA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATGTACCCTGATATCACAATCATGCTGAATAAATGAAATAAATCAA  842

seq1  AGTAAAATTCAGATAACATATTTCTTAAATGTAATTACTAAAATAATTCA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAATTCAGATAACATATTTCTTAAATGTAATTACTAAAATAATTCA  892

seq1  AAACTGAATTCAAAGACAGAAAGAGGTGATCACGTAAGATAAAACTGTTT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGAATTCAAAGACAGAAAGAGGTGATCACGTAAGATAAAACTGTTT  942

seq1  AATAAATAAAGCTACTTACCAAAGACTACCAAAAATTCTTAACATGTTTA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATAAAGCTACTTACCAAAGACTACCAAAAATTCTTAACATGTTTA  992

seq1  ATCATATGGGAAATGTATTCTTCATCTTTTTTTTTTTAAGTTAAGGTCAT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATATGGGAAATGTATTCTTCATCTTTTTTTTTTTAAGTTAAGGTCAT  1042

seq1  AATTTTACCTGTCTTAGGATCAGTTTTCTAAAGGAGGAGGTGGCACAGGA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTACCTGTCTTAGGATCAGTTTTCTAAAGGAGGAGGTGGCACAGGA  1092

seq1  ATGCGGCAGAGTTCAAGTGTGGAATTC  1123
      |||||||||||||||||||||||||||
seq2  ATGCGGCAGAGTTCAAGTGTGGAATTC  1119

seq1: chr1_58451846_58452849
seq2: B6Ng01-329P07.g_71_1081

seq1  GAATTCTGCCTGCTTCTGCATCCCAAGTGCTGGGATTAAAGGTGTGCACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCCTGCTTCTGCATCCCAAGTGCTGGGATTAAAGGTGTGCACT  50

seq1  GCCACCACCACCCAGCAACAAAAAAAAGTTTAAATGGTATTCTTTGAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACCACCACCCAGCAACAAAAAAAAGTTTAAATGGTATTCTTTGAAAA  100

seq1  CTGGCATTGGCCGGGCATGGTGGCATACATCTTTAATTCTTGCAGTTGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCATTGGCCGGGCATGGTGGCATACATCTTTAATTCTTGCAGTTGGA  150

seq1  GAGGCCAGTAAATAGAGGTCTAGTTAGTGAATTCCAGGCCAGCTAGGGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCAGTAAATAGAGGTCTAGTTAGTGAATTCCAGGCCAGCTAGGGCT  200

seq1  ACATAGGGCTGCTTCAAAAAGATGAAGCACACATTAACCTGTTGAGTAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGGGCTGCTTCAAAAAGATGAAGCACACATTAACCTGTTGAGTAGT  250

seq1  TTTGAGGAAATGGAGAATGGGCTAACTACTGGTTTTAAGGTTGTTTCTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGGAAATGGAGAATGGGCTAACTACTGGTTTTAAGGTTGTTTCTGG  300

seq1  TTTTCTACCTTTCATAGAAAGTTTGACACAGATGACAGCATCTTTGTATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTACCTTTCATAGAAAGTTTGACACAGATGACAGCATCTTTGTATA  350

seq1  TTCTCCATAGTCTGTCCCCCGGTTGTGTATTCCAGCCTTTGGTAGGTATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCATAGTCTGTCCCCCGGTTGTGTATTCCAGCCTTTGGTAGGTATA  400

seq1  GTTTTAGCCAATAGATTTTCTTAAACTAAAGCAGTTTATCAATAATGAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTAGCCAATAGATTTTCTTAAACTAAAGCAGTTTATCAATAATGAAG  450

seq1  GAAATTGGGGCTGGAGAGATGGCTCAGCCAGTTAAGGGCACTGACTGTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTGGGGCTGGAGAGATGGCTCAGCCAGTTAAGGGCACTGACTGTTC  500

seq1  TTCCAGGTGTTCTGAGTTCAAATCCCAGTAATCACATGGTGACTTACAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGGTGTTCTGAGTTCAAATCCCAGTAATCACATGGTGACTTACAAC  550

seq1  CGTCCATGAGATCTGACGCCCCCTCCTGGTGTATCTCAAGTCAGCTACAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCCATGAGATCTGACGCCCCCTCCTGGTGTATCTCAAGTCAGCTACAG  600

seq1  TGTACTTACATATAATAAATAAATCTTTAAAAGAAAATAAGGAAACTATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTTACATATAATAAATAAATCTTTAAAAGAAAATAAGGAAACTATT  650

seq1  CTCTGAGTTTGTAGATTCCTAGCACTATCTTGATAAAATTGTATAACTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAGTTTGTAGATTCCTAGCACTATCTTGATAAAATTGTATAACTTT  700

seq1  TATTCTTAGCATCTGGGAGATATCACTTAAATCCAGATAAAGTGGTGTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTTAGCATCTGGGAGATATCACTTAAATCCAGATAAAGTGGTGTGG  750

seq1  CATCCGCCTGTAATCCAGCACTCATACTACAGAGGCAGAAGAGTTGCCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCGCCTGTAATCCAGCACTCATACTACAGAGGCAGAAGAGTTGCCAA  800

seq1  TGTTAACT-GGACCATCCTAGGATGCAAAAACCAGTCTTTGAGTGCCTCC  849
      |||||||| ||||||||||||||||| |||||||||||||||||||||||
seq2  TGTTAACTGGGACCATCCTAGGATGC-AAAACCAGTCTTTGAGTGCCTCC  849

seq1  CCCAATAACAAAAAAA-GGGGGGGGGCTTATGGCCTGGTTCTAGGGATAA  898
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CCCAATAACAAAAAAAGGGGGGGGGGCTTATGGCCTGGTTCTAGGGATAA  899

seq1  TCATCCAGGGTTGCCTGGAGCTAAGGGGGTTTTAAAGAC-AGGACTTTCA  947
      ||||||||||||| |||||||| |||||||||||||||| ||||||||||
seq2  TCATCCAGGGTTGGCTGGAGCTTAGGGGGTTTTAAAGACAAGGACTTTCA  949

seq1  GTAAAACCAAGAGAA-TCTT-GGAAACATTTTCACTCTCAT-GCT-GTAT  993
      ||||||||||||||| |||| |||| ||||||||||||||| ||| ||||
seq2  GTAAAACCAAGAGAATTCTTGGGAACCATTTTCACTCTCATGGCTGGTAT  999

seq1  AAAA-TCAGGAA  1004
      |||| |||||||
seq2  AAAATTCAGGAA  1011