BAC Information

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BAC

Clone NameB6Ng01-330B14
Chromosome1 (Build37)
Map Location 47,854,381 - 47,979,977
singlet/doubletdoublet
Overlap genenone
Upstream geneSlc39a10, EG227061, LOC666869
Downstream geneLOC546734, LOC674566, LOC100041936, LOC666903, LOC666909
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-330B14.bB6Ng01-330B14.g
ACCGA116872GA116873
length1,1391,134
definitionB6Ng01-330B14.b B6Ng01-330B14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,854,381 - 47,855,531)(47,978,826 - 47,979,977)
sequence
gaattcctatttctcttgcttctacttctgaagcactggtattatagaca
ggtaacgtttctctcttttgattgttaatattattgtgttttttattgtc
ttactatttttatcagtttaatttttacttgtcaataatgcctgacagaa
acaacttgaggttgaaataattttctttggtttgtagttacccaaggagc
tgaaggggtcaatccacggttgcatagctccatgagctaatactactgcc
aatttgaaaataaatgttgagtagcgttgttaccccaatgtatagcagag
acagaagcagagatagctcagagacctactgtctctagtgagggtccaat
tcctgccttatttaactcctcagtcatgcagtaagtatccatctaattac
ccaaagctacgtgatctaaacgagctcccaaatgtagcaagacttgccca
aaagtgtgctgtacgaatgtttcatgtatttatccatctatcaagctgaa
aattaaaattgcacctgacttctctttctcatttgtcctttcaacttttg
tgtgagtggattgcttctgtttttttaatttgttttgttttgatttttaa
aaatattaatcgcatatatctacagtgaaagaaatttttcattgatattt
tccaatatgtggaaaacagaaccatgactaatatatgtaaatagccacca
gactcagaattcaattatttttgtggaagaaaaacttacaaatgaagccc
aactataaaacctgcaggtagattgtatttatatcttgttttatattcta
aagttgttacactgaaataaatgtgctcaaatgtagagtaaagtggtcct
ggtattaaaatctatctcacattgcaaataacaaactagtgaatagcatc
taattatagtgattactttggattaaatgtaaaagaaatgtaattatatc
atgcgcgcaatgaaggttttcacagtactatagcattccaacatttttta
ctaggatgcttttagtaatcctccagctgtatagaaaacacctgtgaaat
aacatgactctttctatgcaactattatttatagataaatatgtaggatc
aaatactggtgttaatacatgagctcttcagtaatctac

gaattcaaagaagtactgagccatatgtgaattctaataccaccttctcc
tacagctctttcatttctgttcaatgagttttacttctagtcattatggg
gaaattatgaaatatagattaatggttgcattttaatacttttgatgtgt
tgtttaatgaggtatgtgctgtttcatagcttacatcaaagaggcatctg
ctagaaaccttcttatcatacacatcaagtgattttcgcactaataagaa
taatcatctgaataatgcaatacactatttcttttttataccaatgcatt
tttcttatggaattgggtcctattttgcaacagttttagctttgacttta
aatcatactcattaatggacataaatttctgaaaacaagctttaataata
tgtaagattaaataatagttacatgatgcagacatttaattcttttctaa
gatataacatatagttcaaggaattataacaatggtattaccaatcacaa
atatcagttctaaatgtgtcattgacaactttgagtatataatactcact
ttcagtcattgaaaatcattagtgaaatagtcctaaacttaaaatacatg
atccagttcaaaaaatgactcagtggttacaagtacttactgatctttca
gaggccatgagatcaattcctgttattcatctcctcgtactcatacaaac
acacatccacacaattaaaaatactaggagtaaatatttaaaagtataag
catggacttgagttaaataacaatgtaattgtagctgctgcaaagactac
cagacaccactaggtcagtttctgtctcacctccaaacgaatattcaacc
taggcattaatggtttaaataaactatatctatgttaaaccttggaaaat
atgaacatttctttaagtgaaaacccaaaaaatcataatgcagagctcat
gacagcattatgaattctttcagaagatatagagatgtaggaacttgtaa
ttgtgaacgcacagaaagatataaaatgaaacttaggacattgctagagc
tggtgtatagcagggactgcttatcagcacactgcaggatccccttgttc
caggttagagaagactcaaggttagggaatgcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_47854381_47855531
seq2: B6Ng01-330B14.b_49_1187

seq1  GAATTCCTATTTCTCTTGCTTCTACTTCTGAAGCACTGGTATTATAGACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTATTTCTCTTGCTTCTACTTCTGAAGCACTGGTATTATAGACA  50

seq1  GGTAACGTTTCTCTCTTTTGATTGTTAATATTATTGTGTTTTTTATTGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAACGTTTCTCTCTTTTGATTGTTAATATTATTGTGTTTTTTATTGTC  100

seq1  TTACTATTTTTATCAGTTTAATTTTTACTTGTCAATAATGCCTGACAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTATTTTTATCAGTTTAATTTTTACTTGTCAATAATGCCTGACAGAA  150

seq1  ACAACTTGAGGTTGAAATAATTTTCTTTGGTTTGTAGTTACCCAAGGAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTTGAGGTTGAAATAATTTTCTTTGGTTTGTAGTTACCCAAGGAGC  200

seq1  TGAAGGGGTCAATCCACGGTTGCATAGCTCCATGAGCTAATACTACTGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGGGTCAATCCACGGTTGCATAGCTCCATGAGCTAATACTACTGCC  250

seq1  AATTTGAAAATAAATGTTGAGTAGCGTTGTTACCCCAATGTATAGCAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGAAAATAAATGTTGAGTAGCGTTGTTACCCCAATGTATAGCAGAG  300

seq1  ACAGAAGCAGAGATAGCTCAGAGACCTACTGTCTCTAGTGAGGGTCCAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAGCAGAGATAGCTCAGAGACCTACTGTCTCTAGTGAGGGTCCAAT  350

seq1  TCCTGCCTTATTTAACTCCTCAGTCATGCAGTAAGTATCCATCTAATTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCCTTATTTAACTCCTCAGTCATGCAGTAAGTATCCATCTAATTAC  400

seq1  CCAAAGCTACGTGATCTAAACGAGCTCCCAAATGTAGCAAGACTTGCCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGCTACGTGATCTAAACGAGCTCCCAAATGTAGCAAGACTTGCCCA  450

seq1  AAAGTGTGCTGTACGAATGTTTCATGTATTTATCCATCTATCAAGCTGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGTGCTGTACGAATGTTTCATGTATTTATCCATCTATCAAGCTGAA  500

seq1  AATTAAAATTGCACCTGACTTCTCTTTCTCATTTGTCCTTTCAACTTTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAAATTGCACCTGACTTCTCTTTCTCATTTGTCCTTTCAACTTTTG  550

seq1  TGTGAGTGGATTGCTTCTGTTTTTTTAATTTGTTTTGTTTTGATTTTTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGTGGATTGCTTCTGTTTTTTTAATTTGTTTTGTTTTGATTTTTAA  600

seq1  AAATATTAATCGCATATATCTACAGTGAAAGAAATTTTTCATTGATATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTAATCGCATATATCTACAGTGAAAGAAATTTTTCATTGATATTT  650

seq1  TCCAATATGTGGAAAACAGAACCATGACTAATATATGTAAATAGCCACCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATATGTGGAAAACAGAACCATGACTAATATATGTAAATAGCCACCA  700

seq1  GACTCAGAATTCAATTATTTTTGTGGAAGAAAAACTTACAAATGAAGCCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCAGAATTCAATTATTTTTGTGGAAGAAAAACTTACAAATGAAGCCC  750

seq1  AACTATAAAACCTGCAGGTAGATTGTATTTATATCTTGTTTTATATTCTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATAAAACCTGCAGGTAGATTGTATTTATATCTTGTTTTATATTCTA  800

seq1  AAGTTGTTACACTGAAATAAATGTGCTCAAATGTAGAGTAAAGTGGTCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGTTACACTGAAATAAATGTGCTCAAATGTAGAGTAAAGTGGTCCT  850

seq1  GGTATTAAAATCTATCTCACATTGCAAATAACAAACTAGTGAATAGCATC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATTAAAATCTATCTCACATTGCAAATAACAAACTAGTGAATAGCATC  900

seq1  TAATTATAGTGATTACTTTGGATTAAATGTAAAAGAAATGTAATTATATC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTATAGTGATTACTTTGGATTAAATGTAAAAGAAATGTAATTATATC  950

seq1  ATGCGCGCAATGAAGGTTTTCACAGTACTATAGCATTCCAACATTTTTTA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCGCGCAATGAAGGTTTTCACAGTACTATAGCATTCCAACATTTTTTA  1000

seq1  CTAGGATGCTTTTAGTAATCCTCCAGCTGTAATAGAAAACACCTGTGAAA  1050
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CTAGGATGCTTTTAGTAATCCTCCAGCTGT-ATAGAAAACACCTGTGAAA  1049

seq1  TACAATGACTCTTTCTAATGCAAACTAATTATTATAGGAATTAAAATAAT  1100
      ||  |||||||||||| |||| ||||| |  ||||||  ||  |||| ||
seq2  TAACATGACTCTTTCT-ATGC-AACTATTATTTATAG--AT--AAAT-AT  1092

seq1  GTAAGGAATCAAAATACT-GTGTT-ATACAATGAGCTCCTTTCAGTAATC  1148
      |||  | ||| ||||||| ||||| |||| ||||||||  ||||||||||
seq2  GTA--GGATC-AAATACTGGTGTTAATAC-ATGAGCTC--TTCAGTAATC  1136

seq1  TAC  1151
      |||
seq2  TAC  1139


seq1: chr1_47978826_47979977
seq2: B6Ng01-330B14.g_71_1204 (reverse)

seq1  TAGCATTCCCCTAACC-TGAGTCCTCCTTCCTACCCTGGAACAAGGGGAT  49
      ||||||| |||||||| |||||| ||    ||| ||||||||||||||||
seq2  TAGCATT-CCCTAACCTTGAGTCTTC---TCTAACCTGGAACAAGGGGAT  46

seq1  CCCCTGCCAGTGGTGCTTGATAAGGCAGTCCCCTGCTATACACCCAGCTC  99
        |||| |||| |||| |||||| ||||| |||||||||||| |||||||
seq2  --CCTG-CAGT-GTGC-TGATAA-GCAGT-CCCTGCTATACA-CCAGCTC  88

seq1  TAGCAATGGTCTTAAGGTTTCCATTTTATATCTTTCTGTGCGTTCACAAT  149
      ||||||| ||| ||||  || |||||||||||||||||||||||||||||
seq2  TAGCAAT-GTCCTAAG--TTTCATTTTATATCTTTCTGTGCGTTCACAAT  135

seq1  TACAAGTTCCTACATTCTCTAATATCTTCTGAAAGAATTCATAATGCTGT  199
      |||||||||||||| ||||| |||||||||||||||||||||||||||||
seq2  TACAAGTTCCTACA-TCTCT-ATATCTTCTGAAAGAATTCATAATGCTGT  183

seq1  CATGAGCTCTGCATTTATGATTTTTTGGTTTTTCACTTAAAGAAATGTTC  249
      ||||||||||||| |||||||||||||| |||||||||||||||||||||
seq2  CATGAGCTCTGCA-TTATGATTTTTTGGGTTTTCACTTAAAGAAATGTTC  232

seq1  ATATTTTCCAAGGTTTAACATAGATATAGTTTATTTTAAACCATTAATGC  299
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  ATATTTTCCAAGGTTTAACATAGATATAGTTTA-TTTAAACCATTAATGC  281

seq1  CTAGGTTGAATATTCGTTTGGAGGTGAGACAGAAACTGACCTAGTGGTGT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGTTGAATATTCGTTTGGAGGTGAGACAGAAACTGACCTAGTGGTGT  331

seq1  CTGGTAGTCTTTGCAGCAGCTACAATTACATTGTTATTTAACTCAAGTCC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTAGTCTTTGCAGCAGCTACAATTACATTGTTATTTAACTCAAGTCC  381

seq1  ATGCTTATACTTTTAAATATTTACTCCTAGTATTTTTAATTGTGTGGATG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTATACTTTTAAATATTTACTCCTAGTATTTTTAATTGTGTGGATG  431

seq1  TGTGTTTGTATGAGTACGAGGAGATGAATAACAGGAATTGATCTCATGGC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTGTATGAGTACGAGGAGATGAATAACAGGAATTGATCTCATGGC  481

seq1  CTCTGAAAGATCAGTAAGTACTTGTAACCACTGAGTCATTTTTTGAACTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAAAGATCAGTAAGTACTTGTAACCACTGAGTCATTTTTTGAACTG  531

seq1  GATCATGTATTTTAAGTTTAGGACTATTTCACTAATGATTTTCAATGACT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCATGTATTTTAAGTTTAGGACTATTTCACTAATGATTTTCAATGACT  581

seq1  GAAAGTGAGTATTATATACTCAAAGTTGTCAATGACACATTTAGAACTGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTGAGTATTATATACTCAAAGTTGTCAATGACACATTTAGAACTGA  631

seq1  TATTTGTGATTGGTAATACCATTGTTATAATTCCTTGAACTATATGTTAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGTGATTGGTAATACCATTGTTATAATTCCTTGAACTATATGTTAT  681

seq1  ATCTTAGAAAAGAATTAAATGTCTGCATCATGTAACTATTATTTAATCTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTAGAAAAGAATTAAATGTCTGCATCATGTAACTATTATTTAATCTT  731

seq1  ACATATTATTAAAGCTTGTTTTCAGAAATTTATGTCCATTAATGAGTATG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATTATTAAAGCTTGTTTTCAGAAATTTATGTCCATTAATGAGTATG  781

seq1  ATTTAAAGTCAAAGCTAAAACTGTTGCAAAATAGGACCCAATTCCATAAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAAGTCAAAGCTAAAACTGTTGCAAAATAGGACCCAATTCCATAAG  831

seq1  AAAAATGCATTGGTATAAAAAAGAAATAGTGTATTGCATTATTCAGATGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGCATTGGTATAAAAAAGAAATAGTGTATTGCATTATTCAGATGA  881

seq1  TTATTCTTATTAGTGCGAAAATCACTTGATGTGTATGATAAGAAGGTTTC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCTTATTAGTGCGAAAATCACTTGATGTGTATGATAAGAAGGTTTC  931

seq1  TAGCAGATGCCTCTTTGATGTAAGCTATGAAACAGCACATACCTCATTAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGATGCCTCTTTGATGTAAGCTATGAAACAGCACATACCTCATTAA  981

seq1  ACAACACATCAAAAGTATTAAAATGCAACCATTAATCTATATTTCATAAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACACATCAAAAGTATTAAAATGCAACCATTAATCTATATTTCATAAT  1031

seq1  TTCCCCATAATGACTAGAAGTAAAACTCATTGAACAGAAATGAAAGAGCT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCATAATGACTAGAAGTAAAACTCATTGAACAGAAATGAAAGAGCT  1081

seq1  GTAGGAGAAGGTGGTATTAGAATTCACATATGGCTCAGTACTTCTTTGAA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGAGAAGGTGGTATTAGAATTCACATATGGCTCAGTACTTCTTTGAA  1131

seq1  TTC  1152
      |||
seq2  TTC  1134


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