BAC Information

Click to search

BAC

Clone NameB6Ng01-330J07
Chromosome1 (Build37)
Map Location 59,373,835 - 59,505,739
singlet/doubletdoublet
Overlap geneAls2cr7
Upstream geneAox3l1, EG628262, Bzw1, Clk1, Ppil3, Nif3l1, Orc2l, BC049806, Ndufb3, EG667397, Als2cr12, Cflar, LOC100042431, Casp8, EG667419, Trak2, Als2cr2, 4930408G06Rik, EG667447, Als2cr11, Als2cr4, Mpp4, Als2
Downstream geneFzd7, Gm973, Sumo1, LOC100042476, Nol5, B430105G09Rik, LOC100043007, Bmpr2, Als2cr13, LOC100042496, Ica1l, Wdr12, Carf, Nbeal1, Cyp20a1, Abi2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-330J07.bB6Ng01-330J07.g
ACCGA117201GA117202
length1,154158
definitionB6Ng01-330J07.b B6Ng01-330J07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,504,581 - 59,505,739)(59,373,835 - 59,373,992)
sequence
gaattcctgcttccaccagaggaggatgcttgatgcaaactgatggtctg
cctggaagtggctttggtccacaactacctggagaatcaaaaaacaaagc
aaaacaaaacaaaacaaaacaaaaaaaacccacaaaacagattccccagg
gatcctttgagtcggaatctcagtgggaaggctgcctgaggattgttttt
ctaaagcctctcctcaggtacggaggtggtacggaaactgaagacttata
aagacctttctagcatgaatacagtctttgttgtgctttaaacctgcaaa
tgcttgttaactagttggaattccaaatccacaaactggctaaacttctg
tgggcctgagtggtatctggggcggattcttctgaccggtatctttccta
agatgggccaggagggccttccccctggattctttcagacttttgagctc
ctagcacagggactcagtagctttgggcttatgttgccaagatctgacgc
cttagaaggggtagacatggctgacacagggaggagggagaacaagtccc
cctacttgcccaagcccagagtgttcctacagcttctgtctgatggctcc
tgcctgatgccctcccaatcaactgtctctctttcatcccccactttccc
ctgaaaccctctcctgcttccttaggacttatttcctcgtattccctgca
gtccataggcattcacgcttacggcctttaaagcggatctttttcgactt
acatattcttgctcaacgtatattgtatctcagtcatcaattcattcaac
acatgtttgttgagtttcctgctttgtgccagacttttgtgggccacatt
ggtgaacaaacttgacaaagacccttgctctcatgggatgcatttttctt
aacaggatgatacacattttacttatgggttttaaaagaaagaaaggact
gcagggctggagcccggttggtaggagctaggctaatacacacaagcact
ggttttcttccccagcagacaaaaacactatggcagcccacatctgtact
tccagcggtcatgaggcgatgcagagcaccagaagtttcagttcaagcat
tattggctccgatcctgggacagggaactgagggcatactctaataaaca
gacc
tccttctgactgtaaaaccactttaagatgttccctgcatgtatatgatc
tcagggctgattgtacatacaggtaacattaaatggactaagcatgttgt
atttatgtatttagggatagatcttgaatttgagagagggagagggagaa
agagagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_59504581_59505739
seq2: B6Ng01-330J07.b_51_1204 (reverse)

seq1  GGTCTGTTTTGTAGAATATGCCCCTCAGTCCCTTGTCCCAGGATCTGAAA  50
      |||||||||  |||| |||| |||||||| || |||||||||||| |  |
seq2  GGTCTGTTTATTAGAGTATG-CCCTCAGTTCCCTGTCCCAGGATCGG--A  47

seq1  CCAAATAATGGCCTTGAACCTGGAACTTCTGGTGCTCTTGCCTCTGCCTC  100
       | |||||||  |||||| ||| |||||||||||||| ||| || |||||
seq2  GCCAATAATG--CTTGAA-CTGAAACTTCTGGTGCTC-TGCATC-GCCTC  92

seq1  CTGACCGCTGGAGTTACAGATGTGTGCTGCCATAGTGTTTTTGTGCTGCT  150
       |||||||||||  |||||||||| ||||||||||||||||||| |||||
seq2  ATGACCGCTGGAAGTACAGATGTGGGCTGCCATAGTGTTTTTGT-CTGCT  141

seq1  GGGGATGAAAACCCAGTGCTTTGTGTGTATTAGCCTAGCT-CTACCAACC  199
      ||||| ||||| ||||||| |||||||||||||||||||| |||||||||
seq2  GGGGAAGAAAA-CCAGTGC-TTGTGTGTATTAGCCTAGCTCCTACCAACC  189

seq1  GGGCTCCAGCCCTGCAGTCCTTTCTTTCTTTT-AAACCCATAAGT-AAAT  247
      |||||||||||||||||||||||||||||||| |||||||||||| ||||
seq2  GGGCTCCAGCCCTGCAGTCCTTTCTTTCTTTTAAAACCCATAAGTAAAAT  239

seq1  GTGTATCATCCTGTTA--GAATATGCATCCCATGAGAGCAAGGGTCTTTG  295
      ||||||||||||||||   || ||||||||||||||||||||||||||||
seq2  GTGTATCATCCTGTTAAGAAAAATGCATCCCATGAGAGCAAGGGTCTTTG  289

seq1  TCAAGTTTGTTCACCAATGTGGCCCACAAAAGTCTGGCACAAAGCAGGAA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTTTGTTCACCAATGTGGCCCACAAAAGTCTGGCACAAAGCAGGAA  339

seq1  ACTCAACAAACATGTGTTGAATGAATTGATGACTGAGATACAATATACGT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAACAAACATGTGTTGAATGAATTGATGACTGAGATACAATATACGT  389

seq1  TGAGCAAGAATATGTAAGTCG-AAAAGATCCGCTTTAAAGGCCGTAAGCG  444
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TGAGCAAGAATATGTAAGTCGAAAAAGATCCGCTTTAAAGGCCGTAAGCG  439

seq1  TGAATGCCTATGGACTGCAGGGAATACGAGGAAATAAGTCCTAAGGAAGC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGCCTATGGACTGCAGGGAATACGAGGAAATAAGTCCTAAGGAAGC  489

seq1  AGGAGAGGGTTTCAGGGGAAAGTGGGGGATGAAAGAGAGACAGTTGATTG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAGGGTTTCAGGGGAAAGTGGGGGATGAAAGAGAGACAGTTGATTG  539

seq1  GGAGGGCATCAGGCAGGAGCCATCAGACAGAAGCTGTAGGAACACTCTGG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGCATCAGGCAGGAGCCATCAGACAGAAGCTGTAGGAACACTCTGG  589

seq1  GCTTGGGCAAGTAGGGGGACTTGTTCTCCCTCCTCCCTGTGTCAGCCATG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGGCAAGTAGGGGGACTTGTTCTCCCTCCTCCCTGTGTCAGCCATG  639

seq1  TCTACCCCTTCTAAGGCGTCAGATCTTGGCAACATAAGCCCAAAGCTACT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACCCCTTCTAAGGCGTCAGATCTTGGCAACATAAGCCCAAAGCTACT  689

seq1  GAGTCCCTGTGCTAGGAGCTCAAAAGTCTGAAAGAATCCAGGGGGAAGGC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCCCTGTGCTAGGAGCTCAAAAGTCTGAAAGAATCCAGGGGGAAGGC  739

seq1  CCTCCTGGCCCATCTTAGGAAAGATACCGGTCAGAAGAATCCGCCCCAGA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTGGCCCATCTTAGGAAAGATACCGGTCAGAAGAATCCGCCCCAGA  789

seq1  TACCACTCAGGCCCACAGAAGTTTAGCCAGTTTGTGGATTTGGAATTCCA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACTCAGGCCCACAGAAGTTTAGCCAGTTTGTGGATTTGGAATTCCA  839

seq1  ACTAGTTAACAAGCATTTGCAGGTTTAAAGCACAACAAAGACTGTATTCA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGTTAACAAGCATTTGCAGGTTTAAAGCACAACAAAGACTGTATTCA  889

seq1  TGCTAGAAAGGTCTTTATAAGTCTTCAGTTTCCGTACCACCTCCGTACCT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAGAAAGGTCTTTATAAGTCTTCAGTTTCCGTACCACCTCCGTACCT  939

seq1  GAGGAGAGGCTTTAGAAAAACAATCCTCAGGCAGCCTTCCCACTGAGATT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGAGGCTTTAGAAAAACAATCCTCAGGCAGCCTTCCCACTGAGATT  989

seq1  CCGACTCAAAGGATCCCTGGGGAATCTGTTTTGTGGGTTTTTTTTGTTTT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGACTCAAAGGATCCCTGGGGAATCTGTTTTGTGGGTTTTTTTTGTTTT  1039

seq1  GTTTTGTTTTGTTTTGCTTTGTTTTTTGATTCTCCAGGTAGTTGTGGACC  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTTTTGTTTTGCTTTGTTTTTTGATTCTCCAGGTAGTTGTGGACC  1089

seq1  AAAGCCACTTCCAGGCAGACCATCAGTTTGCATCAAGCATCCTCCTCTGG  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCACTTCCAGGCAGACCATCAGTTTGCATCAAGCATCCTCCTCTGG  1139

seq1  TGGAAGCAGGAATTC  1159
      |||||||||||||||
seq2  TGGAAGCAGGAATTC  1154

seq1: chr1_59373835_59373992
seq2: B6Ng01-330J07.g_75_232

seq1  TCCTTCTGACTGTAAAACCACTTTAAGATGTTCCCTGCATGTATATGATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCTGACTGTAAAACCACTTTAAGATGTTCCCTGCATGTATATGATC  50

seq1  TCAGGGCTGATTGTACATACAGGTAACATTAAATGGACTAAGCATGTTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGCTGATTGTACATACAGGTAACATTAAATGGACTAAGCATGTTGT  100

seq1  ATTTATGTATTTAGGGATAGATCTTGAATTTGAGAGAGGGAGAGGGAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATGTATTTAGGGATAGATCTTGAATTTGAGAGAGGGAGAGGGAGAA  150

seq1  AGAGAGGA  158
      ||||||||
seq2  AGAGAGGA  158