BAC Information

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BAC

Clone NameB6Ng01-330M16
Chromosome1 (Build37)
Map Location 19,942,709 - 19,943,829
singlet/doubletsinglet
Overlap genenone
Upstream geneEG435611, LOC100040189, Tcfap2d, LOC100040413, Tcfap2b, LOC100040198, LOC226901
Downstream genePkhd1, Il17a, Il17f, Mcm3, Paqr8, Efhc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-330M16.bB6Ng01-330M16.g
ACCGA117345GA117346
length1,1971,115
definitionB6Ng01-330M16.b B6Ng01-330M16.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcatgaatgtaattacaaagtcatatctagaaaaaaaatattcctc
tctatcttccaggaattaccttcttttgtcctctgtttccatgatgatct
cttagctttagagggagtttaatatagatctctccattagagatgagcac
ttacaagcactttgtactttgcccagaatgagtctacagtcagtcctatt
gactctaaaagggaggcttctctgagtgaagatgaaaaccgtacaaatta
tgaatataattataaatatttagaaggctgttgatagcaataacatttag
caaaataataaaagatttctctcataatgcatatgatctccacaaccatg
gacttttgaccaggtttgtgccaggaataaattacttcacattcaatagg
cctcaaagccaatcagaaagtgcttggttgtcttctttacatttaagtca
caattgcaacagtcactacatcttgccagctaggtgattattgtagcaag
cgtctaaaatcaatggatgtctatttctgagcagcagagatctgattata
actgaatgataagactatatgaccaaaaatattgcatagattggttagat
gacatagagaaatcaatcttatatcaaccataaaaaacttcttccttgat
ggctaactttcattactgccagaaggctgtatgttatacattgttgaggt
gagggtgtggactagagaaggtaacagcttctggaacatgcagaagcgac
agagcttctgaggcagacaccgtttcaggctccagacatccgggcacctt
ccctgccagaggagaggtgtccaccctgcccgggaggcttttgccagagc
accctagagagccatcttggttcctggatcctgccaagactagtctgcac
aggtgagagtgtggaatacagaagctaacagcttctgggacaggtggaag
ccacacagcttctgagcagaccccatttcggggtcagatacccgggcact
tcctgcagagagagtgtctgcccacccgggaggctttgctgagcaactgg
gagcaatctgtttcagttccctctggaactagtcgtgcaggtgagagtgt
tgactaacacagcaaatagcctctggacgcccctgtttggctccttctgg
cagagcaagttcgaacctacgagaattctggttgccacaacttatca
gaattcatgcttaaatactctcagatttctgaactctgaggcccctgaat
tcagccttgaaacaattgcagtcctggtggacagcagcgtatgttggaag
agtcagaaattttcctctctacagaaattttgtgtttccactaatttttc
ttttaggtttttttattattttttttaatgtatatgagggatttaatctt
cgggcaccacagttaaggtaaagatcaatttgcatacatcaaaatgagta
aaatcttcagtgtttaccaaatactcttacaactattaagacatttgctt
gcattgcccctgtgtggatgtctgtgcctggcatactctctgcagatgag
gaaacagcagctctgaaacctgtgaaggggcccattctgagtagacagtg
agctctggggaaacatcacaggacaatatggccagtcaacaaagaaatct
gtctgtgagccagagtttcagtcactaagtgtaggaatgtatgacttctt
gtattacattgttttcaatgtaatactgggatagcctgaactacattctt
tagcatattcatctcatctattcttcctcacactgctctcctctctaata
tctctgcctgaatttcttcttttccttggaaactcaactgaacacaccct
tcctccatgaaatcttcactgatagcactaagcagtcactaatttttttc
ccttgtgtgttttctctggcctcaaaattactctttcatgatgaatttac
caagttgtattagtcccactaatacaactgtagctcctgctaggctccaa
gtttcacaggagtgatgtcttgaatcatttatgttcaagtccccacattt
gttatggacccagcaatgatgtcagctctcaggggatggtggaagattct
cctgtatgtgtgtggctccacattgttcttatgtcactacatctgacact
caaaagaatctcatgattacaatgcaagaccctcagcttctgtcctttct
taccctttctgtagcagcactacttagtaagttcgatagaactggtgcca
acactacctcttgtttttcaatgtagttaataagaagttcaagagcatgg
gttattctatggtat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_19942709_19943829
seq2: B6Ng01-330M16.g_70_1184

seq1  GAATTCATGCTTAAATACTCTCAGATTTCTGAACTCTGAGGCCCCTGAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGCTTAAATACTCTCAGATTTCTGAACTCTGAGGCCCCTGAAT  50

seq1  TCAGCCTTGAAACAATTGCAGTCCTGGTGGACAGCAGCGTATGTTGGAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCTTGAAACAATTGCAGTCCTGGTGGACAGCAGCGTATGTTGGAAG  100

seq1  AGTCAGAAATTTTCCTCTCTACAGAAATTTTGTGTTTCCACTAATTTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGAAATTTTCCTCTCTACAGAAATTTTGTGTTTCCACTAATTTTTC  150

seq1  TTTTAGGTTTTTTTATTATTTTTTTTAATGTATATGAGGGATTTAATCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGGTTTTTTTATTATTTTTTTTAATGTATATGAGGGATTTAATCTT  200

seq1  CGGGCACCACAGTTAAGGTAAAGATCAATTTGCATACATCAAAATGAGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGCACCACAGTTAAGGTAAAGATCAATTTGCATACATCAAAATGAGTA  250

seq1  AAATCTTCAGTGTTTACCAAATACTCTTACAACTATTAAGACATTTGCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTTCAGTGTTTACCAAATACTCTTACAACTATTAAGACATTTGCTT  300

seq1  GCATTGCCCCTGTGTGGATGTCTGTGCCTGGCATACTCTCTGCAGATGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTGCCCCTGTGTGGATGTCTGTGCCTGGCATACTCTCTGCAGATGAG  350

seq1  GAAACAGCAGCTCTGAAACCTGTGAAGGGGCCCATTCTGAGTAGACAGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAGCAGCTCTGAAACCTGTGAAGGGGCCCATTCTGAGTAGACAGTG  400

seq1  AGCTCTGGGGAAACATCACAGGACAATATGGCCAGTCAACAAAGAAATCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTGGGGAAACATCACAGGACAATATGGCCAGTCAACAAAGAAATCT  450

seq1  GTCTGTGAGCCAGAGTTTCAGTCACTAAGTGTAGGAATGTATGACTTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTGAGCCAGAGTTTCAGTCACTAAGTGTAGGAATGTATGACTTCTT  500

seq1  GTATTACATTGTTTTCAATGTAATACTGGGATAGCCTGAACTACATTCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTACATTGTTTTCAATGTAATACTGGGATAGCCTGAACTACATTCTT  550

seq1  TAGCATATTCATCTCATCTATTCTTCCTCACACTGCTCTCCTCTCTAATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATATTCATCTCATCTATTCTTCCTCACACTGCTCTCCTCTCTAATA  600

seq1  TCTCTGCCTGAATTTCTTCTTTTCCTTGGAAACTCAACTGAACACACCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGCCTGAATTTCTTCTTTTCCTTGGAAACTCAACTGAACACACCCT  650

seq1  TCCTCCATGAAATCTTCACTGATAGCACTAAGCAGTCACTAATTTTTTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCATGAAATCTTCACTGATAGCACTAAGCAGTCACTAATTTTTTTC  700

seq1  CCTTGTGTGTTTTCTCTGGCCTCAAAATTACTCTTTCATGATGAATTTAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTGTGTTTTCTCTGGCCTCAAAATTACTCTTTCATGATGAATTTAC  750

seq1  CAAGTTGTATTAGTCCCACTAATACAACTGTAGCTCCTGCTAGGCTCCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTGTATTAGTCCCACTAATACAACTGTAGCTCCTGCTAGGCTCCAA  800

seq1  GTTTCACAGGAGTGATGTCTTGAATCATTTATGTTCAAGTCCCCACATTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCACAGGAGTGATGTCTTGAATCATTTATGTTCAAGTCCCCACATTT  850

seq1  GTTATGGACCCAGCAATGATGTCAGCTCTCAGGGGATGGTGGAAGATTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATGGACCCAGCAATGATGTCAGCTCTCAGGGGATGGTGGAAGATTCT  900

seq1  CCTGTATGTGTGTGGCTCCACATTGTTTCTTATGTCACCTACATCTGACA  950
      ||||||||||||||||||||||||| ||||||||||| ||||||||||| 
seq2  CCTGTATGTGTGTGGCTCCACATTG-TTCTTATGTCA-CTACATCTGAC-  947

seq1  ACTCAAAAAGAATCTCATGATTACAATGCAAGACCCCTCCAGCTTCTGTC  1000
      |||| |||||||||||||||||||||||||||||||   |||||||||||
seq2  ACTC-AAAAGAATCTCATGATTACAATGCAAGACCC--TCAGCTTCTGTC  994

seq1  CTTTCTTACCCTTTCTGTAGCAGGCACTACTTAGTAAGTTTCGAATAGAA  1050
      |||||||||||||||||||||| ||||||||||||||| |||| ||||||
seq2  CTTTCTTACCCTTTCTGTAGCA-GCACTACTTAGTAAG-TTCG-ATAGAA  1041

seq1  CT-GTGCC-ACACCA-CTC-TGTTTTCAAATTGTAGTTAATAAAGAAGTC  1096
      || ||||| |||| | ||| ||||||  || |||||||||| ||||||| 
seq2  CTGGTGCCAACACTACCTCTTGTTTTTCAA-TGTAGTTAAT-AAGAAGTT  1089

seq1  AAAGAGCATGGG-TATTCTATGGTAT  1121
       ||||||||||| |||||||||||||
seq2  CAAGAGCATGGGTTATTCTATGGTAT  1115