BAC Information

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BAC

Clone NameB6Ng01-331C04
Chromosome1 (Build37)1 (Build37)
Map Location 128,512,841 - 128,513,983149,331,301 - 149,332,145
singlet/doubletsingletsinglet
Overlap geneE030049G20Rik
Upstream geneLypd1
Downstream geneLOC383559, Mgat5, LOC667090, Tmem163
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-331C04.bB6Ng01-331C04.g
ACCGA117589GA117590
length1,149853
definitionB6Ng01-331C04.b B6Ng01-331C04.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(128,512,841 - 128,513,983)(149,331,301 - 149,332,145)
sequence
gaattccaatatgagaattaatagctcaaagaatcagaatgttgctgtgg
ttcttaataaatatactgcacaattagttctgaaatacacaaacaagttc
atgtaaaagttcattgaattgttgaaagttttaatgcatttcatttcata
aattagaccgtaacttggctcatttaatgattccattttctctttggtgc
ttcatcccaaatctgaaatgcttgtcttttggtggatagggatttttctc
atattcttaaccttgtattacacacacatgttcatgtgtgtgcatgctca
aatgtgtataagtaaacatgtgtgtgcattcatagagagagagtacagat
agtaaccatagtcatttctcaagcatgacccatatttttgagacaagtcc
ctcactaacctagagctcaccaaataggctgaagtggccagtgagcccaa
ggaaccagctctctctccttccctagtcctgggattacaagcaattgcca
gcatgtctgggtttttaaagtgtgggttacagggatcaaactcaggtact
catatttggtcagcaagtaagttatgtgtccccaggttcatttctgagat
tcctacaaaaacctgggataataccatctttaacaatctgattcctttca
tttttgaatacccaagtcagaaaccttgaaaactagaactctagtcacac
atcaattggccagtgatctctctactaaatggacttgcaatagaccagga
gcctcccagctatattatttccaagtgtgttgataaatatctttggagct
tttcatgctggaagaattagtgagttattttgcagaggcaaaccgaattt
atgggccaataaataacaggctaaataagtcatagtcagagatcagccta
cacagagaaaccgggacaccttcgagacttcttggtggtaatgaaaccga
aaggctgtcaccaaatgctgttatctgtctgggtgggaaagtgctagtag
aacagtgatatcccagaaagtagaaaaattgcactaaagcccaaagaaac
ctttgagtgaatggcagaatgtggacaataactgagtgataaaattaaac
gtgccaggaagccaagttcaatgtaacattcaccctcagcaaagttctg
gaattccattattattagcttttcacaggagttctggggatcaaaatcag
tcctcacgcttgggcagcaggcactttgtagacttgcatcatcttcccat
ccctgactggactctttcttaggtagctaaggttccatcttgaaaacctg
attccatcattcattctgagaagttccttctccctaagtgatactctgtg
aggctgtgtggcaggtgggttctcagtgattgctacagcaaactggctta
cagtgttacagaaggctttgtttccagtgggtatttctgaaaggtaggta
aaccaaggagtagttctccatgttcatttatccactttctctctctctct
ctcttttttacttttcttcttcttcttcttcttcttcttcttcttcttct
tcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttc
ctcttcttaaatattttctttatttacatttcaaattttatctcctttcc
tatcccctatcccatccttccttcccctgctcactaacccacctactccc
gtttccctgccctggcattcccctacactggggcatcaagccttcactag
accaagggcctctcctctcattgatgtcccacaaggccatcctctgctac
atgtgcagctggagcctttagtccctccatgtgtactctttggttggtca
tttagtccctgggagctctgggttactggttagtttatatggttgttcct
cctatggggctgcaaactctttcagctacttgagtaatttctctagctcc
tccttcgggggaccatgtgctcagtccagaggatggctgtgagcatcgca
ttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_128512841_128513983
seq2: B6Ng01-331C04.b_42_1190

seq1  GAATTCCAATATGAGAATTAATAGCTCAAAGAATCAGAATGTTGCTGTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAATATGAGAATTAATAGCTCAAAGAATCAGAATGTTGCTGTGG  50

seq1  TTCTTAATAAATATACTGCACAATTAGTTCTGAAATACACAAACAAGTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAATAAATATACTGCACAATTAGTTCTGAAATACACAAACAAGTTC  100

seq1  ATGTAAAAGTTCATTGAATTGTTGAAAGTTTTAATGCATTTCATTTCATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAAAAGTTCATTGAATTGTTGAAAGTTTTAATGCATTTCATTTCATA  150

seq1  AATTAGACCGTAACTTGGCTCATTTAATGATTCCATTTTCTCTTTGGTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGACCGTAACTTGGCTCATTTAATGATTCCATTTTCTCTTTGGTGC  200

seq1  TTCATCCCAAATCTGAAATGCTTGTCTTTTGGTGGATAGGGATTTTTCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCCCAAATCTGAAATGCTTGTCTTTTGGTGGATAGGGATTTTTCTC  250

seq1  ATATTCTTAACCTTGTATTACACACACATGTTCATGTGTGTGCATGCTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCTTAACCTTGTATTACACACACATGTTCATGTGTGTGCATGCTCA  300

seq1  AATGTGTATAAGTAAACATGTGTGTGCATTCATAGAGAGAGAGTACAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGTATAAGTAAACATGTGTGTGCATTCATAGAGAGAGAGTACAGAT  350

seq1  AGTAACCATAGTCATTTCTCAAGCATGACCCATATTTTTGAGACAAGTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAACCATAGTCATTTCTCAAGCATGACCCATATTTTTGAGACAAGTCC  400

seq1  CTCACTAACCTAGAGCTCACCAAATAGGCTGAAGTGGCCAGTGAGCCCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTAACCTAGAGCTCACCAAATAGGCTGAAGTGGCCAGTGAGCCCAA  450

seq1  GGAACCAGCTCTCTCTCCTTCCCTAGTCCTGGGATTACAAGCAATTGCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACCAGCTCTCTCTCCTTCCCTAGTCCTGGGATTACAAGCAATTGCCA  500

seq1  GCATGTCTGGGTTTTTAAAGTGTGGGTTACAGGGATCAAACTCAGGTACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTCTGGGTTTTTAAAGTGTGGGTTACAGGGATCAAACTCAGGTACT  550

seq1  CATATTTGGTCAGCAAGTAAGTTATGTGTCCCCAGGTTCATTTCTGAGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTTGGTCAGCAAGTAAGTTATGTGTCCCCAGGTTCATTTCTGAGAT  600

seq1  TCCTACAAAAACCTGGGATAATACCATCTTTAACAATCTGATTCCTTTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTACAAAAACCTGGGATAATACCATCTTTAACAATCTGATTCCTTTCA  650

seq1  TTTTTGAATACCCAAGTCAGAAACCTTGAAAACTAGAACTCTAGTCACAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGAATACCCAAGTCAGAAACCTTGAAAACTAGAACTCTAGTCACAC  700

seq1  ATCAATTGGCCAGTGATCTCTCTACTAAATGGACTTGCAATAGACCAGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATTGGCCAGTGATCTCTCTACTAAATGGACTTGCAATAGACCAGGA  750

seq1  GCCTCCCAGCTATATTATTTCCAAGTGTGTTGATAAATATCTTTGGAGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCCAGCTATATTATTTCCAAGTGTGTTGATAAATATCTTTGGAGCT  800

seq1  TTTCATGCTGGAAGAATTAGTGAGTTATTTTGCAGAGGCAAACCGAATTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATGCTGGAAGAATTAGTGAGTTATTTTGCAGAGGCAAACCGAATTT  850

seq1  ATGGGCCAATAAATAACAGGCTAAATAAGTCATAGTCAGAGATCAGCCTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGCCAATAAATAACAGGCTAAATAAGTCATAGTCAGAGATCAGCCTA  900

seq1  CACAGAGAAACC-GGACACCTTCGAGACTTCTTGGTGGTAATGAAACCG-  948
      |||||||||||| |||||||||||||||||||||||||||||||||||| 
seq2  CACAGAGAAACCGGGACACCTTCGAGACTTCTTGGTGGTAATGAAACCGA  950

seq1  AAGGCTGTCACCAAATGCTGTTATCTGTCTGGGTGGGAAAGTGCTAGTAG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTGTCACCAAATGCTGTTATCTGTCTGGGTGGGAAAGTGCTAGTAG  1000

seq1  AACAGTGATATCCCAGAAAGTAGAAAAATTGCACTAAAG-CCAAAGAAAC  1047
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AACAGTGATATCCCAGAAAGTAGAAAAATTGCACTAAAGCCCAAAGAAAC  1050

seq1  CTTTGAGTGGATGGCAGATTGTGGACAATAACTGAGTGATAAAA-TAAAC  1096
      ||||||||| |||||||| ||||||||||||||||||||||||| |||||
seq2  CTTTGAGTGAATGGCAGAATGTGGACAATAACTGAGTGATAAAATTAAAC  1100

seq1  GTTCCCAGGAACCCAAG-TCATTGTAACA-TCACC--CAGCAAAGGTTCT  1142
      | | ||||||| ||||| ||| ||||||| |||||  ||||||| |||||
seq2  G-TGCCAGGAAGCCAAGTTCAATGTAACATTCACCCTCAGCAAA-GTTCT  1148

seq1  G  1143
      |
seq2  G  1149

seq1: chr1_149331301_149332145
seq2: B6Ng01-331C04.g_66_911

seq1  GAATTCCATTATTATTAGCTTTTCACAGGAGTTCTGGGGATCAAAATCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTATTATTAGCTTTTCACAGGAGTTCTGGGGATCAAAATCAG  50

seq1  TCCTCACGCTTGGGCAGCAGGCACTTTGTAGACTTGCATCATCTTCCCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCACGCTTGGGCAGCAGGCACTTTGTAGACTTGCATCATCTTCCCAT  100

seq1  CCCTGACTGGACTCTTTCTTAGGTAGCTAAGGTTCCATCTTGAAAACCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGACTGGACTCTTTCTTAGGTAGCTAAGGTTCCATCTTGAAAACCTG  150

seq1  ATTCCATCATTCATTCTGAGAAGTTCCTTCTCCCTAAGTGATACTCTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCATCATTCATTCTGAGAAGTTCCTTCTCCCTAAGTGATACTCTGTG  200

seq1  AGGCTGTGTGGCAGGTGGGTTCTCAGTGATTGCTACAGCAAACTGGCTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGTGTGGCAGGTGGGTTCTCAGTGATTGCTACAGCAAACTGGCTTA  250

seq1  CAGTGTTACAGAAGGCTTTGTTTCCAGTGGGTATTTCTGAAAGGTAGGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTTACAGAAGGCTTTGTTTCCAGTGGGTATTTCTGAAAGGTAGGTA  300

seq1  AACCAAGGAGTAGTTCTCCATGTTCATTTATCCACTTTCTCTCTCTCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAGGAGTAGTTCTCCATGTTCATTTATCCACTTTCTCTCTCTCTCT  350

seq1  CTCTTTTTTACTTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTTTTACTTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCT  400

seq1  TCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC  450

seq1  CTCTTCTTAAATATTTTCTTTATTTACATTTCAAATTTTATCTCCTTTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCTTAAATATTTTCTTTATTTACATTTCAAATTTTATCTCCTTTCC  500

seq1  TATCCCCTATCCCATCCTCCCTTCCCCTGCTCACTAACCCACCTACTCCC  550
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TATCCCCTATCCCATCCTTCCTTCCCCTGCTCACTAACCCACCTACTCCC  550

seq1  GTTTCCCTGCCCTGGCATTCCCCTACACTGGGGCATCAAGCCTTCACTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCCTGCCCTGGCATTCCCCTACACTGGGGCATCAAGCCTTCACTAG  600

seq1  ACCAAGGGCCTCTCCTCTCATTGATGTCCCACAAGGCCATCCTCTGCTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGGGCCTCTCCTCTCATTGATGTCCCACAAGGCCATCCTCTGCTAC  650

seq1  ATGTGCAGCTGGAGCCTTTAGTCCCTCCATGTGTACTCTTTGGTTGGTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCAGCTGGAGCCTTTAGTCCCTCCATGTGTACTCTTTGGTTGGTCA  700

seq1  TTTAGTCCCTGGGAGCTCTGGGTTACTGGTTAGTTTATATGGTTGTTCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTCCCTGGGAGCTCTGGGTTACTGGTTAGTTTATATGGTTGTTCCT  750

seq1  CCTATGGGGCTGCAAACTCTTTCAGCTCCTTGAGTAATTTCTCTAGCTCC  800
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CCTATGGGGCTGCAAACTCTTTCAGCTACTTGAGTAATTTCTCTAGCTCC  800

seq1  TCCAT-TGGGGACCCTGTGCTCAGTCCAGTGGATGGCTGTGAGCAT  845
      ||| |  ||||||| |||||||||||||| ||||||||||||||||
seq2  TCCTTCGGGGGACCATGTGCTCAGTCCAGAGGATGGCTGTGAGCAT  846