BAC Information

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BAC

Clone NameB6Ng01-331H09
Chromosome1 (Build37)
Map Location 171,752,319 - 171,901,953
singlet/doubletdoublet
Overlap geneLOC100039960, 1700084C01Rik, Hsd17b7
Upstream geneEG383613, Nuf2, Rgs5, Rgs4
Downstream geneDdr2, LOC100040571, Uap1, Uhmk1, Sh2d1b2, EG622708, Sh2d1b1, EG665574, 1700015E13Rik, Nos1ap, LOC100040002, LOC640532, Olfml2b, Atf6, Dusp12, Fcrlb, Fcrla, LOC100040778, Fcgr2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-331H09.bB6Ng01-331H09.g
ACCGA117820GA117821
length1,1601,102
definitionB6Ng01-331H09.b B6Ng01-331H09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(171,752,319 - 171,753,482)(171,900,841 - 171,901,953)
sequence
gaattctacatcacaggaatgagtcagagaagattctatagaccatctgt
tcaattgctatgtggagctgtggcgcttcgggaagcgtatggggttcgta
gcgcatctcattagctggatttggaattctgagactcaggcaagagcctc
atctctatacattacaagactctttaatttttagcagagttgtttaaata
atcaatgttctccataaggacggtaggctgatttattctgaaggatttac
ctgggtttgatgtaataagacgcaggcatagccatgattaacattcttcc
tatagtatactgtgttgccctccagtaaaaagccaccatcaatctagttt
gatacctatctaattggattggaatctgcaggtcagtggaatacatgcta
gtataatgttattttacaataagaaatctgaaatttaaataatttgtctc
aatagtttagaggcatttcaagtagaaactagggctcaaatccaattttc
ctggttttgactctccagggctttgtaacaaggaggagcaaaaatacaag
tacaaactaccagcctttctcacaggatgctactaaaattcaaggatgga
gagtggggacaggattatgatccatgttttataagtgatccaaaacagaa
tttcaaagtatcacacttacaatttaattaaaaagtaatacctcataata
tctatcaattgagtataatagtaatgtaagaatgtgagcattttaatcta
tgcactcagacctactcacttgacaaagtaggaaacaatgattcagaagc
atccaaacttttgacaaaatattgtcaacctcaagtatgttggactgtat
tcatagctaccctggggtgcacagaggccacacctagagattgtctcaca
cctaagataactgatccaaagcagaacccatgcaaggcctggtccattga
ctccctgttccaccctgagtccacacctctcttctttctgcactggacag
attcccatgcgaaaatcatcccccatatatgagaagaccatttctagcca
gctagcatcactctgaaaaagacttcaaggactgcaagtcgtctttttac
ttttactgccaatctctggttccgatgcatcggaggtgctgctttcagtc
ttggtctctg
gaattctgagtaacaggagcacacttctcccagcaggtgtcctagtagaa
aagagaatgggcatgaattctcaaagaataaacagtattcatgagtgcac
ttcctatctctgcaatgtccaggctttcaggaccgaagaccaggaatata
cctgagcggtggaactgggatggaacaaaaagaaacaaggggactaggga
tgttcagagatctaattctgctgccaacacatactgccgaggcttaatgg
cagatatgagtgatggcttgcatctatgcacacacatacacaaacaacac
agacaagttatccacatgtttcattatgtaggtcattattgaggatggaa
attttgtctattcagtttttcattagcaacttgcatgggtctggttaagt
tgcagagaacaagaaaactattttccgttcagagttttatatttacttcc
tatttgaaaaagaagtgaccacacatctgtaagtccttctcttctagagt
ccttggatcctacacagggtaacacatgaccatttaccaccaatgaactg
ggtaaaactctcagttagttttgagccagactgaatgcatttttttttaa
gggaagagcattgaaaaatatgaacatgagaaactacacagccccaactg
gaagttattcattagtcccgtttgcaaattagaggccgtctattctgtga
atgtttctaagaaccaagaatagaactttgtactcagagcaaaagatatg
tctctcatccttacctactgtcccctaaaaggaaaagcgatcacggtctg
actttagggtagagatggatttattacaaggagcacaattaatgttgagt
taactacacctgctcaactcatgccaaggcttgccagtgatagcttcact
cactgtgcaccagactgttctggtacccaactgaagaaccccaggacaca
caaaacccaagatgagtagtttggagtgaggtaaaacaaaacaaatccaa
ccaaacctacactcactatgaattaaaaatattttcattgctcggggtgt
gactctctatggacaatgacttaaaaataaacatttagattatagtcaag
tc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_171752319_171753482
seq2: B6Ng01-331H09.b_50_1209

seq1  GAATTCTACATCACAGGAATGAGTCAGAGAAGATTCTATAGACCATCTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACATCACAGGAATGAGTCAGAGAAGATTCTATAGACCATCTGT  50

seq1  TCAATTGCTATGTGGAGCTGTGGCGCTTCGGGAAGCGTATGGGGTTCGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTGCTATGTGGAGCTGTGGCGCTTCGGGAAGCGTATGGGGTTCGTA  100

seq1  GCGCATCTCATTAGCTGGATTTGGAATTCTGAGACTCAGGCAAGAGCCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCATCTCATTAGCTGGATTTGGAATTCTGAGACTCAGGCAAGAGCCTC  150

seq1  ATCTCTATACATTACAAGACTCTTTAATTTTTAGCAGAGTTGTTTAAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTATACATTACAAGACTCTTTAATTTTTAGCAGAGTTGTTTAAATA  200

seq1  ATCAATGTTCTCCATAAGGACGGTAGGCTGATTTATTCTGAAGGATTTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATGTTCTCCATAAGGACGGTAGGCTGATTTATTCTGAAGGATTTAC  250

seq1  CTGGGTTTGATGTAATAAGACGCAGGCATAGCCATGATTAACATTCTTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTTTGATGTAATAAGACGCAGGCATAGCCATGATTAACATTCTTCC  300

seq1  TATAGTATACTGTGTTGCCCTCCAGTAAAAAGCCACCATCAATCTAGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTATACTGTGTTGCCCTCCAGTAAAAAGCCACCATCAATCTAGTTT  350

seq1  GATACCTATCTAATTGGATTGGAATCTGCAGGTCAGTGGAATACATGCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACCTATCTAATTGGATTGGAATCTGCAGGTCAGTGGAATACATGCTA  400

seq1  GTATAATGTTATTTTACAATAAGAAATCTGAAATTTAAATAATTTGTCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAATGTTATTTTACAATAAGAAATCTGAAATTTAAATAATTTGTCTC  450

seq1  AATAGTTTAGAGGCATTTCAAGTAGAAACTAGGGCTCAAATCCAATTTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTTTAGAGGCATTTCAAGTAGAAACTAGGGCTCAAATCCAATTTTC  500

seq1  CTGGTTTTGACTCTCCAGGGCTTTGTAACAAGGAGGAGCAAAAATACAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTTTGACTCTCCAGGGCTTTGTAACAAGGAGGAGCAAAAATACAAG  550

seq1  TACAAACTACCAGCCTTTCTCACAGGATGCTACTAAAATTCAAGGATGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAACTACCAGCCTTTCTCACAGGATGCTACTAAAATTCAAGGATGGA  600

seq1  GAGTGGGGACAGGATTATGATCCATGTTTTATAAGTGATCCAAAACAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGGGGACAGGATTATGATCCATGTTTTATAAGTGATCCAAAACAGAA  650

seq1  TTTCAAAGTATCACACTTACAATTTAATTAAAAAGTAATACCTCATAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAAGTATCACACTTACAATTTAATTAAAAAGTAATACCTCATAATA  700

seq1  TCTATCAATTGAGTATAATAGTAATGTAAGAATGTGAGCATTTTAATCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCAATTGAGTATAATAGTAATGTAAGAATGTGAGCATTTTAATCTA  750

seq1  TGCACTCAGACCTACTCACTTGACAAAGTAGGAAACAATGATTCAGAAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTCAGACCTACTCACTTGACAAAGTAGGAAACAATGATTCAGAAGC  800

seq1  ATCCAAACTTTTGACAAAATATTGTCAACCTCAAGTATGTTGGACTGTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAAACTTTTGACAAAATATTGTCAACCTCAAGTATGTTGGACTGTAT  850

seq1  TCATAGCTACCCTGGGGTGCACAGAGGCCACACCTAGAGATTGTCTCACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGCTACCCTGGGGTGCACAGAGGCCACACCTAGAGATTGTCTCACA  900

seq1  CCTAAGATAACTGATCCAAAGCAGAACCCATGCAAGGCCTGGTCCATTGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAGATAACTGATCCAAAGCAGAACCCATGCAAGGCCTGGTCCATTGA  950

seq1  CTCCCTGTTCCACCCTGAGTCCACACCTCTC-TCTTTCTGCACTGGACAG  999
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CTCCCTGTTCCACCCTGAGTCCACACCTCTCTTCTTTCTGCACTGGACAG  1000

seq1  ATTCCCATGCGAAAAATCAT-CCCCATATATGAGAAGGACCATTTCTAGC  1048
      ||||||||||| |||||||| ||||||||||||||| |||||||||||||
seq2  ATTCCCATGCG-AAAATCATCCCCCATATATGAGAA-GACCATTTCTAGC  1048

seq1  CAGCTAGCCATCACTCTG-AAAAGACTTCAAGAACTGCCAGTCGGTCTTT  1097
      ||||||| |||||||||| ||||||||||||| ||||| |||| ||||||
seq2  CAGCTAG-CATCACTCTGAAAAAGACTTCAAGGACTGCAAGTC-GTCTTT  1096

seq1  TACCTTTTACTGCAAATCTCT-GTTCCGATGCATCGGAGGTTGCTGCCTT  1146
      |  |||||||||| ||||||| |||||||||||||||||| ||||| |||
seq2  TTACTTTTACTGCCAATCTCTGGTTCCGATGCATCGGAGG-TGCTG-CTT  1144

seq1  TCAGTTCTTGTGTCTCTG  1164
      |||| ||||| |||||||
seq2  TCAG-TCTTG-GTCTCTG  1160

seq1: chr1_171900841_171901953
seq2: B6Ng01-331H09.g_67_1168 (reverse)

seq1  GACTGGACTATTAATCTAAAATGTTTAATTTTTAAAGTCATTTGTCATAG  50
      |||| ||||| |||||| |||||||||  |||| ||||||||   |||||
seq2  GACTTGACTA-TAATCT-AAATGTTTA--TTTTTAAGTCATTGTCCATAG  46

seq1  AGAGTCACAACCCCGAGCAATGAAAATATTTTTTAATTCATAGGTGAGTG  100
      |||||||| ||||||||||||||||||| ||||||||||||| |||||||
seq2  AGAGTCAC-ACCCCGAGCAATGAAAATA-TTTTTAATTCATA-GTGAGTG  93

seq1  TTGGGTTTTGGTTTGGTTTTGTTTTGTTTTTACCTCACTCCAAACTACTC  150
      | ||  ||||| |||| ||||||||| |||||||||||||||||||||||
seq2  TAGG--TTTGG-TTGGATTTGTTTTG-TTTTACCTCACTCCAAACTACTC  139

seq1  ATCTTGGGTTTGTGT-TGTCCTGGGGTTCTTCAGTTGGGTACCAGAACAG  199
      ||||||||||| ||| ||||||||||||||||||||||||||||||||||
seq2  ATCTTGGGTTT-TGTGTGTCCTGGGGTTCTTCAGTTGGGTACCAGAACAG  188

seq1  TCTGGTGCACAGTGAGTGAAGCTATCACTGGCAAGCCTTGGCATGAGTTG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTGCACAGTGAGTGAAGCTATCACTGGCAAGCCTTGGCATGAGTTG  238

seq1  AGCAGGTGTAGTTAACTCAACATTAATTGTGCTCCTTGTAATAAATCCAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGTGTAGTTAACTCAACATTAATTGTGCTCCTTGTAATAAATCCAT  288

seq1  CTCTACCCTAAAGTCAGACCGTGATCGCTTTTCCTTTTAGGGGACAGTAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACCCTAAAGTCAGACCGTGATCGCTTTTCCTTTTAGGGGACAGTAG  338

seq1  GTAAGGATGAGAGACATATCTTTTGCTCTGAGTACAAAGTTCTATTCTTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGGATGAGAGACATATCTTTTGCTCTGAGTACAAAGTTCTATTCTTG  388

seq1  GTTCTTAGAAACATTCACAGAATAGACGGCCTCTAATTTGCAAACGGGAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTAGAAACATTCACAGAATAGACGGCCTCTAATTTGCAAACGGGAC  438

seq1  TAATGAATAACTTCCAGTTGGGGCTGTGTAGTTTCTCATGTTCATATTTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAATAACTTCCAGTTGGGGCTGTGTAGTTTCTCATGTTCATATTTT  488

seq1  TCAATGCTCTTCCCTTAAAAAAAAATGCATTCAGTCTGGCTCAAAACTAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGCTCTTCCCTTAAAAAAAAATGCATTCAGTCTGGCTCAAAACTAA  538

seq1  CTGAGAGTTTTACCCAGTTCATTGGTGGTAAATGGTCATGTGTTACCCTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAGTTTTACCCAGTTCATTGGTGGTAAATGGTCATGTGTTACCCTG  588

seq1  TGTAGGATCCAAGGACTCTAGAAGAGAAGGACTTACAGATGTGTGGTCAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGATCCAAGGACTCTAGAAGAGAAGGACTTACAGATGTGTGGTCAC  638

seq1  TTCTTTTTCAAATAGGAAGTAAATATAAAACTCTGAACGGAAAATAGTTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTTCAAATAGGAAGTAAATATAAAACTCTGAACGGAAAATAGTTT  688

seq1  TCTTGTTCTCTGCAACTTAACCAGACCCATGCAAGTTGCTAATGAAAAAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTTCTCTGCAACTTAACCAGACCCATGCAAGTTGCTAATGAAAAAC  738

seq1  TGAATAGACAAAATTTCCATCCTCAATAATGACCTACATAATGAAACATG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATAGACAAAATTTCCATCCTCAATAATGACCTACATAATGAAACATG  788

seq1  TGGATAACTTGTCTGTGTTGTTTGTGTATGTGTGTGCATAGATGCAAGCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATAACTTGTCTGTGTTGTTTGTGTATGTGTGTGCATAGATGCAAGCC  838

seq1  ATCACTCATATCTGCCATTAAGCCTCGGCAGTATGTGTTGGCAGCAGAAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTCATATCTGCCATTAAGCCTCGGCAGTATGTGTTGGCAGCAGAAT  888

seq1  TAGATCTCTGAACATCCCTAGTCCCCTTGTTTCTTTTTGTTCCATCCCAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATCTCTGAACATCCCTAGTCCCCTTGTTTCTTTTTGTTCCATCCCAG  938

seq1  TTCCACCGCTCAGGTATATTCCTGGTCTTCGGTCCTGAAAGCCTGGACAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACCGCTCAGGTATATTCCTGGTCTTCGGTCCTGAAAGCCTGGACAT  988

seq1  TGCAGAGATAGGAAGTGCACTCATGAATACTGTTTATTCTTTGAGAATTC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGAGATAGGAAGTGCACTCATGAATACTGTTTATTCTTTGAGAATTC  1038

seq1  ATGCCCATTCTCTTTTCTACTAGGACACCTGCTGGGAGAAGTGTGCTCCT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCCATTCTCTTTTCTACTAGGACACCTGCTGGGAGAAGTGTGCTCCT  1088

seq1  GTTACTCAGAATTC  1113
      ||||||||||||||
seq2  GTTACTCAGAATTC  1102