BAC Information

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BAC

Clone NameB6Ng01-331P16
Chromosome1 (Build37)
Map Location 37,944,998 - 38,101,425
singlet/doubletdoublet
Overlap geneMitd1, Mrpl30, Gm776, 2300002O18Rik, Txndc9, EG666434, Eif5b
Upstream geneTmem131, EG241053, A230074B11Rik, 4921511C04Rik, Cnga3, Inpp4a, 6330578E17Rik, Unc50, Mgat4a, 2010300C02Rik, Tsga10, EG623661
Downstream geneRev1, EG329123, Aff3, Lonrf2, Chst10, EG625775, Nms, Pdcl3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-331P16.bB6Ng01-331P16.g
ACCGA118210GA118211
length1,190815
definitionB6Ng01-331P16.b B6Ng01-331P16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,100,223 - 38,101,425)(37,944,998 - 37,945,750)
sequence
gaattcaggcattttcttgtacaaaaggcccccgttagagactgtgcaaa
tgaagctctcagatgagaaactgctgaggtggcatgctgtccattttagc
ctccagtgagttggtgtaaacctgctctctgcagaacagaaggtcctaga
atgatcctatgaacactaacatgtgagttattaaatcagcagataggcaa
ggactgatgacagcaagtgccagtcaggatgacgtagtaactgcttcctt
gctcaatctagaaataatcagtctgactagttaataacaagagactattt
cctcacttgtcaatctgtgagatatttcaggtgaaggaaatgctatctgc
aaacagaaatcaatatactgaacctgtaaatctatccaattatgcatcaa
tctaaaagatactaattttgtttatccatatctcccctgtgagtatgaga
ataagagaaggaattaatcactaaataatgacagagactgtgtcacctga
cagcgagcccacactgacaaggtaaggaagcagctttgtctgtcactaag
agaaaacccagttaaggagggacagacctaagatgactgtcaggatcaaa
ttactgcttgaggtctttaaaataatttctgaaaatatacttaacatttg
ttctaaccttgacaaaaaggcaaaaagaaaaagggctaatgtttgtagag
ctgaaggaaaacctgagatgatctaaaaacccagttttactggaaaaaga
aaagataagtgatcttgaagacagagcactgagaagcagcaacaccgcac
agagagaatctgattgggggaaaaatactccgccctagcttgtttatcat
gtgacattaagtaataaatttagtagagaatatctgaacaatcaccaata
aagataaagactagatgaacactaatataattcaatacactcaaatatga
ttgacctattacacaatcacacagataaattctaaaaggagaaagtctta
aaagtaagcaatataaaaacacgcagagtacaggaaaagatggagcagca
aagcagaaacattagggaaaaaagtagatcatacaaggtgaaaatattct
tcagatgatgctttgaagaaaaaccattttggtcataaaggaagttaaca
gagcctttgtttaacattagttatataccttttttaacag
gaattccatccctgagacataaatgacaatgagaagtgactctgccaaat
tgttctctcacctccagagatatacactgtggccttcctttttttttttt
tttttttgctaatcatagaccttacgggggcattttctcaattgagtttc
ccacctttcaggtaaatctagcttgggtcaacttgacataaaactagctg
ccatgcctggggaggagagcactagctaacactgacagtactgatacttg
gtaagtgctggatagttttatgtcaacttcacataagcctaagtcatctg
agaggaggaggggacctcaattaagaaaatgcctagctgagcgttatgac
acatgtctttttaatctcagcacttaggagacagatctatgagttcaagg
ttagcctggtctacagagagagtttggatagctacggctacacagagaaa
ctctgaggaggggtgcctccataggtttggcctctggcaagcttgtaggg
tattttctttattggtgattgatggagaagggcctagcccattgtgaatg
gagccaccccctggctggtggtcctgggttctataagagagcaggctgag
caagccatgatgaacaagccagcctgcaagcagcactcctccatggcctc
tgcatcagctcctgcctccaggtttcttccctgtttgagttcctgtcctg
acttccttcaatgatgtactacaaatgtggaagtaaataagccctttcct
ccccagcttacttttggtcatggtgtttcatcccagcaacagaaacccta
actaggacagcaagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_38100223_38101425
seq2: B6Ng01-331P16.b_49_1238 (reverse)

seq1  CTTTTAAAAAAG---TATAACTAATGGT-AACAAA-GCTCTGTTACCTTT  45
      || |||||||||   ||||||||||| | |||||| ||||||||| ||| 
seq2  CTGTTAAAAAAGGTATATAACTAATGTTAAACAAAGGCTCTGTTAACTTC  50

seq1  CTTTTTAATGACAAAAAT-GTGTTTCTTCAAAAGCATCATTCTTGAAG-A  93
      ||||   ||||| ||||| || ||||||| ||||||||||   ||||| |
seq2  CTTT---ATGACCAAAATGGTTTTTCTTC-AAAGCATCAT--CTGAAGAA  94

seq1  TATTTTCACTTGTTATGGAATTCTACTTTTTTCCCTTAAATGTTTTCCTG  143
      ||||||||| |  ||||    |||||||||||||||  |||||||  |||
seq2  TATTTTCACCTTGTATG---ATCTACTTTTTTCCCT--AATGTTT--CTG  137

seq1  CTTTTGCTGCTTCCATCTTTTCCTGTTACTCTGCGTGTTTTTTATATTGC  193
      | |||||||| |||||||||||||| ||||||||||| ||||||||||||
seq2  C-TTTGCTGC-TCCATCTTTTCCTG-TACTCTGCGTG-TTTTTATATTGC  183

seq1  TTACTTTTAAGACTTTCTCCTTTTTAGAATTTTATCTGTGTGATTGTGTA  243
      |||||||||||||||||||| |||||||| ||||||||||||||||||||
seq2  TTACTTTTAAGACTTTCTCC-TTTTAGAA-TTTATCTGTGTGATTGTGTA  231

seq1  ATAGGTCAATCATATTTGAGTTGTATTGAATTATATTAGTGTTCATCTAG  293
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ATAGGTCAATCATATTTGAG-TGTATTGAATTATATTAGTGTTCATCTAG  280

seq1  TCTTTATCTTTATTGGTGATTGTTCAGATATTCTCTACTAAATTTATTAC  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTATCTTTATTGGTGATTGTTCAGATATTCTCTACTAAATTTATTAC  330

seq1  TTAATGTCACATGATAAACAAGCTAGGGCGGAGTATTTTTCCCCCAATCA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGTCACATGATAAACAAGCTAGGGCGGAGTATTTTTCCCCCAATCA  380

seq1  GATTCTCTCTGTGCGGTGTTGCTGCTTCTCAGTGCTCTGTCTTCAAGATC  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTCTCTGTGCGGTGTTGCTGCTTCTCAGTGCTCTGTCTTCAAGATC  430

seq1  ACTTATCTTTTCTTTTTCCAGTAAAACTGGGTTTTTAGATCATCTCAGGT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATCTTTTCTTTTTCCAGTAAAACTGGGTTTTTAGATCATCTCAGGT  480

seq1  TTTCCTTCAGCTCTACAAACATTAGCCCTTTTTCTTTTTGCCTTTTTGTC  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTCAGCTCTACAAACATTAGCCCTTTTTCTTTTTGCCTTTTTGTC  530

seq1  AAGGTTAGAACAAATGTTAAGTATATTTTCAGAAATTATTTTAAAGACCT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTAGAACAAATGTTAAGTATATTTTCAGAAATTATTTTAAAGACCT  580

seq1  CAAGCAGTAATTTGATCCTGACAGTCATCTTAGGTCTGTCCCTCCTTAAC  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCAGTAATTTGATCCTGACAGTCATCTTAGGTCTGTCCCTCCTTAAC  630

seq1  TGGGTTTTCTCTTAGTGACAGACAAAGCTGCTTCCTTACCTTGTCAGTGT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTTTCTCTTAGTGACAGACAAAGCTGCTTCCTTACCTTGTCAGTGT  680

seq1  GGGCTCGCTGTCAGGTGACACAGTCTCTGTCATTATTTAGTGATTAATTC  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTCGCTGTCAGGTGACACAGTCTCTGTCATTATTTAGTGATTAATTC  730

seq1  CTTCTCTTATTCTCATACTCACAGGGGAGATATGGATAAACAAAATTAGT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCTTATTCTCATACTCACAGGGGAGATATGGATAAACAAAATTAGT  780

seq1  ATCTTTTAGATTGATGCATAATTGGATAGATTTACAGGTTCAGTATATTG  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTTAGATTGATGCATAATTGGATAGATTTACAGGTTCAGTATATTG  830

seq1  ATTTCTGTTTGCAGATAGCATTTCCTTCACCTGAAATATCTCACAGATTG  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTGTTTGCAGATAGCATTTCCTTCACCTGAAATATCTCACAGATTG  880

seq1  ACAAGTGAGGAAATAGTCTCTTGTTATTAACTAGTCAGACTGATTATTTC  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTGAGGAAATAGTCTCTTGTTATTAACTAGTCAGACTGATTATTTC  930

seq1  TAGATTGAGCAAGGAAGCAGTTACTACGTCATCCTGACTGGCACTTGCTG  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTGAGCAAGGAAGCAGTTACTACGTCATCCTGACTGGCACTTGCTG  980

seq1  TCATCAGTCCTTGCCTATCTGCTGATTTAATAACTCACATGTTAGTGTTC  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCAGTCCTTGCCTATCTGCTGATTTAATAACTCACATGTTAGTGTTC  1030

seq1  ATAGGATCATTCTAGGACCTTCTGTTCTGCAGAGAGCAGGTTTACACCAA  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGATCATTCTAGGACCTTCTGTTCTGCAGAGAGCAGGTTTACACCAA  1080

seq1  CTCACTGGAGGCTAAAATGGACAGCATGCCACCTCAGCAGTTTCTCATCT  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTGGAGGCTAAAATGGACAGCATGCCACCTCAGCAGTTTCTCATCT  1130

seq1  GAGAGCTTCATTTGCACAGTCTCTAACGGGGGCCTTTTGTACAAGAAAAT  1193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCTTCATTTGCACAGTCTCTAACGGGGGCCTTTTGTACAAGAAAAT  1180

seq1  GCCTGAATTC  1203
      ||||||||||
seq2  GCCTGAATTC  1190

seq1: chr1_37944998_37945750
seq2: B6Ng01-331P16.g_70_823

seq1  GAATTCCATCCCTGAGACATAAATGACAATGAGAAGTGACTCTGCCAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATCCCTGAGACATAAATGACAATGAGAAGTGACTCTGCCAAAT  50

seq1  TGTTCTCTCACCTCCAGAGATATACACTGTGGCCTTCCTTTTTTTTTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTCTCACCTCCAGAGATATACACTGTGGCCTTCCTTTTTTTTTTTT  100

seq1  TTTTTTTGCTAATCATAGACCTTACGGGGGCATTTTCTCAATTGAGTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTGCTAATCATAGACCTTACGGGGGCATTTTCTCAATTGAGTTTC  150

seq1  CCACCTTTCAGGTAAATCTAGCTTGGGTCAACTTGACATAAAACTAGCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTTTCAGGTAAATCTAGCTTGGGTCAACTTGACATAAAACTAGCTG  200

seq1  CCATGCCTGGGGAGGAGAGCACTAGCTAACACTGACAGTACTGATACTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCCTGGGGAGGAGAGCACTAGCTAACACTGACAGTACTGATACTTG  250

seq1  GTAAGTGCTGGATAGTTTTATGTCAACTTCACATAAGCCTAAGTCATCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGTGCTGGATAGTTTTATGTCAACTTCACATAAGCCTAAGTCATCTG  300

seq1  AGAGGAGGAGGGGACCTCAATTAAGAAAATGCCTAGCTGAGCGTTATGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAGGAGGGGACCTCAATTAAGAAAATGCCTAGCTGAGCGTTATGAC  350

seq1  ACATGTCTTTTTAATCTCAGCACTTAGGAGACAGATCTATGAGTTCAAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTCTTTTTAATCTCAGCACTTAGGAGACAGATCTATGAGTTCAAGG  400

seq1  TTAGCCTGGTCTACAGAGAGAGTTTGGATAGCTACGGCTACACAGAGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCCTGGTCTACAGAGAGAGTTTGGATAGCTACGGCTACACAGAGAAA  450

seq1  CTCTGAGGAGGGGTGCCTCCATAGGTTTGGCCTCTGGCAAGCTTGTAGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAGGAGGGGTGCCTCCATAGGTTTGGCCTCTGGCAAGCTTGTAGGG  500

seq1  TATTTTCTTTATTGGTGATTGATGGAGAAGGGCCTAGCCCATTGTGAATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCTTTATTGGTGATTGATGGAGAAGGGCCTAGCCCATTGTGAATG  550

seq1  GAGCCACCCCCTGGCTGGTGGTCCTGGGTTCTATAAGAGAGCAGGCTGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCACCCCCTGGCTGGTGGTCCTGGGTTCTATAAGAGAGCAGGCTGAG  600

seq1  CAAGCCATGATGAACAAGCCAGCCTGCAAGCAGCACTCCTCCATGGCCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCCATGATGAACAAGCCAGCCTGCAAGCAGCACTCCTCCATGGCCTC  650

seq1  TGCATCAGCTCCTGCCTCCAGGTTTCTTCCCTGTTTGAGTTCCTGTCCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCAGCTCCTGCCTCCAGGTTTCTTCCCTGTTTGAGTTCCTGTCCTG  700

seq1  ACTTCCTTCAATGATGTACTAC-AATGTGGAAGTAAATAAGCCCTTTCCT  749
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  ACTTCCTTCAATGATGTACTACAAATGTGGAAGTAAATAAGCCCTTTCCT  750

seq1  CCCC  753
      ||||
seq2  CCCC  754