BAC Information

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BAC

Clone NameB6Ng01-332C21
Chromosome1 (Build37)
Map Location 71,391,545 - 71,532,863
singlet/doubletdoublet
Overlap geneAbca12
Upstream geneSpag16, A830006F12Rik, LOC100043210, EG667884, EG666083, LOC100042804, LOC100042809, Bard1, LOC667900
Downstream geneLOC629101, Atic, Fn1, LOC100042814, Gabarapl2-ps1_652.1, LOC383528, LOC675667, EG667931, EG433319, LOC667937, LOC100043255, Mreg, Pecr, Tmem169, Xrcc5, March4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-332C21.bB6Ng01-332C21.g
ACCGA118356GA118357
length1,1601,155
definitionB6Ng01-332C21.b B6Ng01-332C21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,391,545 - 71,392,701)(71,531,699 - 71,532,863)
sequence
gaattcaatgttttctaattaaagactgatcagctttaagatgttatgca
ctggccacataaagctgttgaaacctaacacagtggcattcccctttgga
gatttatttttaattatttgtgacagagagtattatgtgcacattagtga
aggtgtccctggagaccagaggaaggtgttggatcctctggaattggagt
cgtaggcgttgtgaactgcctgatggggaactgggacttgaactcaggcc
ttctgcaagagaattatgtactcttaacctctgagccatctccccagctc
cagactacccccactctcaattgagatgctttgccctgtgtttaaattcc
attaaacttagagaattttgaagaagtaaagccacacattcaagatgctc
caaactcatttaaaagttttctagtaactaaattaagcacaagttttaaa
tttttaaattaaggctgttgtcagttcctctgtcaccctggcacatgcca
agtattcagaaccctcactgatcatgataccataataaaaataacaaata
tatcaatcaacagaaatttaccagatcattaaggaaacaatgttgcttaa
ttggatcaaagtcaaatgccactctcttgcaaaggcaaggaaaagagtgg
gaggaaaaacttacaaaccatgtaactgattaaggaaaaatttaaatcca
tgtagccatatatgccaaacaacgtcatctccacctgcactagctagtct
tctgtcaactttacagacagaatcatataagaggagagaacctcaactga
gaaaatgtctccattttctgctgtaaagcattttttggtgactgatgagg
gagggtcctgccagttgtggttggtgccaatcctgggctggtagttatag
gttctataagaaatcagatgagcagccatgaggagcaagtaaatatcacc
catccagggtctctctattagctcctgtctccaggaacctgccatttgtg
tttctgtcttgagttcctccaatgatgaactgtgatgtgacgtgtaagct
gaataagccttttcctcctccaacttgcttttggggtcatgatgtttcat
tcacagcaatagaaacgcccactaagcatcattgggttgactttagaaag
gaccggtatg
gaattctcacttggaaaacaacacaaagggaaaagttgtcttggtttttt
tacagcatgcctttggccttcagtggggttcaaacacatggctatgaaga
attattattacttatgtcaataaatagtatattaaaatcttgatcatttg
attataaattcaaaactaagaaaatataaggcaagttatttatataagaa
gaaaatgtaaatgaatatatatgtatatatctgtatgagcattcatgcgt
actactagagttattaagtgaactaagagaaatagcgaactacattgcta
gtaacgtcattgacttagcccttcaagtattataattaaccaaataaaga
taaatgaaacacctgttctgcatgagaagcaaggttagaaaatacaagaa
acaagtgttggcgtgaatattcagacatcattttacactattggtgactg
ttttaacgggtatacttaaacagagtcttttcagggcagaaaagcaagac
ttactctgttgaacagttaaataattcctccacttaattaaaaaaataaa
tagttgtatatcatcgagcaatgttattggaaaatttaaaaatgtagttc
ttaggggctaaggagatggtccagtcaagatgtgactgttgtatgagcac
gagggcatgagtttacacatcttctaaatggacaacaagacaataaaact
gctccaaacagcggaaaaaccacacacataaaagccaagcaagcagccgc
tctacggagcctgtactgggggcagagactggaagatccctggcacctga
tgaccggctattctagatgatacggtaactttcagctcagtgagagaccc
tgcctgaaagaatgaagtggaaagacatatagtaagacatgtgacctgca
tctctgcctcatcaataaaaaaaaaaaaaaaaagtaaaaaagcttttttt
attttgcatttgtcctcagaaaacaatgcttctccacacctcattttcat
gaataacatgtggaaagacgtttaattatgggtacacttgtagactgtga
tgttgtgtccacctccaccttacaatctttttctggccacaacactcagt
gcaagtggcctggtaactgtgaatgctcaaactttccccacttaagtcaa
tcgct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_71391545_71392701
seq2: B6Ng01-332C21.b_46_1205

seq1  GAATTCAATGTTTTCTAATTAAAGACTGATCAGCTTTAAGATGTTATGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATGTTTTCTAATTAAAGACTGATCAGCTTTAAGATGTTATGCA  50

seq1  CTGGCCACATAAAGCTGTTGAAACCTAACACAGTGGCATTCCCCTTTGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCACATAAAGCTGTTGAAACCTAACACAGTGGCATTCCCCTTTGGA  100

seq1  GATTTATTTTTAATTATTTGTGACAGAGAGTATTATGTGCACATTAGTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTATTTTTAATTATTTGTGACAGAGAGTATTATGTGCACATTAGTGA  150

seq1  AGGTGTCCCTGGAGACCAGAGGAAGGTGTTGGATCCTCTGGAATTGGAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTCCCTGGAGACCAGAGGAAGGTGTTGGATCCTCTGGAATTGGAGT  200

seq1  CGTAGGCGTTGTGAACTGCCTGATGGGGAACTGGGACTTGAACTCAGGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAGGCGTTGTGAACTGCCTGATGGGGAACTGGGACTTGAACTCAGGCC  250

seq1  TTCTGCAAGAGAATTATGTACTCTTAACCTCTGAGCCATCTCCCCAGCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCAAGAGAATTATGTACTCTTAACCTCTGAGCCATCTCCCCAGCTC  300

seq1  CAGACTACCCCCACTCTCAATTGAGATGCTTTGCCCTGTGTTTAAATTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTACCCCCACTCTCAATTGAGATGCTTTGCCCTGTGTTTAAATTCC  350

seq1  ATTAAACTTAGAGAATTTTGAAGAAGTAAAGCCACACATTCAAGATGCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAACTTAGAGAATTTTGAAGAAGTAAAGCCACACATTCAAGATGCTC  400

seq1  CAAACTCATTTAAAAGTTTTCTAGTAACTAAATTAAGCACAAGTTTTAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTCATTTAAAAGTTTTCTAGTAACTAAATTAAGCACAAGTTTTAAA  450

seq1  TTTTTAAATTAAGGCTGTTGTCAGTTCCTCTGTCACCCTGGCACATGCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAATTAAGGCTGTTGTCAGTTCCTCTGTCACCCTGGCACATGCCA  500

seq1  AGTATTCAGAACCCTCACTGATCATGATACCATAATAAAAATAACAAATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTCAGAACCCTCACTGATCATGATACCATAATAAAAATAACAAATA  550

seq1  TATCAATCAACAGAAATTTACCAGATCATTAAGGAAACAATGTTGCTTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAATCAACAGAAATTTACCAGATCATTAAGGAAACAATGTTGCTTAA  600

seq1  TTGGATCAAAGTCAAATGCCACTCTCTTGCAAAGGCAAGGAAAAGAGTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGATCAAAGTCAAATGCCACTCTCTTGCAAAGGCAAGGAAAAGAGTGG  650

seq1  GAGGAAAAACTTACAAACCATGTAACTGATTAAGGAAAAATTTAAATCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAAAACTTACAAACCATGTAACTGATTAAGGAAAAATTTAAATCCA  700

seq1  TGTAGCCATATATGCCAAACAACGTCATCTCCACCTGCACTAGCTAGTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCCATATATGCCAAACAACGTCATCTCCACCTGCACTAGCTAGTCT  750

seq1  TCTGTCAACTTTACAGACAGAATCATATAAGAGGAGAGAACCTCAACTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCAACTTTACAGACAGAATCATATAAGAGGAGAGAACCTCAACTGA  800

seq1  GAAAATGTCTCCATTTTCTGCTGTAAAGCATTTTTTGGTGACTGATGAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATGTCTCCATTTTCTGCTGTAAAGCATTTTTTGGTGACTGATGAGG  850

seq1  GAGGGTCCTGCCAGTTGTGGTTGGTGCCAATCCTGGGCTGGTAGTTATAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGTCCTGCCAGTTGTGGTTGGTGCCAATCCTGGGCTGGTAGTTATAG  900

seq1  GTTCTATAAGAAATCAGGATGAGCAAGCCATGAGGAGCAAGTAAATATCA  950
      |||||||||||||||| ||||||| |||||||||||||||||||||||||
seq2  GTTCTATAAGAAATCA-GATGAGC-AGCCATGAGGAGCAAGTAAATATCA  948

seq1  CCCATCCAGGGTCTCTCTATTAGCTCCTGTCTCCAGGAACCTGCCATTTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCCAGGGTCTCTCTATTAGCTCCTGTCTCCAGGAACCTGCCATTTG  998

seq1  TGTTTCTGTCTTGAGTTCCTCCAATGATGAACTGTGATGTGGACGTGTAA  1050
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TGTTTCTGTCTTGAGTTCCTCCAATGATGAACTGTGATGT-GACGTGTAA  1047

seq1  GCTGAATAAGCCCTTTCCT-CTCCAACTTGCTTTT-GGGTCATGATGTTT  1098
      |||||||||||| |||||| ||||||||||||||| ||||||||||||||
seq2  GCTGAATAAGCCTTTTCCTCCTCCAACTTGCTTTTGGGGTCATGATGTTT  1097

seq1  CA-TCACAGCAATAGAAACGCCAACTAAGGCATCATT-GGTTGAC-TTAG  1145
      || ||||||||||||||||||| ||||| |||||||| ||||||| ||||
seq2  CATTCACAGCAATAGAAACGCCCACTAA-GCATCATTGGGTTGACTTTAG  1146

seq1  AAA-GACC-GTATG  1157
      ||| |||| |||||
seq2  AAAGGACCGGTATG  1160

seq1: chr1_71531699_71532863
seq2: B6Ng01-332C21.g_65_1219 (reverse)

seq1  AGCGATGGACTTAAGTTTGGGGGGAAGTTTGAAGCATTCCACAGTTTACC  50
      |||||| |||||||||   |||| ||||||| |||||| ||||| |||||
seq2  AGCGATTGACTTAAGT---GGGGAAAGTTTG-AGCATT-CACAG-TTACC  44

seq1  ACGCCACTTGCACTGAAGTG-TGTGG-CAG-AAAAGA-TGTAAGGTGGA-  95
      | ||||||||||||| |||| ||||| ||| |||||| ||||||||||| 
seq2  AGGCCACTTGCACTG-AGTGTTGTGGCCAGAAAAAGATTGTAAGGTGGAG  93

seq1  GTGGACACACATTCACAGTCTACAAGTGTAACCATAATTAAACGTCTTTT  145
      |||||||||   |||||||||||||||||| |||||||||||||||||| 
seq2  GTGGACACAACATCACAGTCTACAAGTGTACCCATAATTAAACGTCTTT-  142

seq1  CCAACATGTTATTCATGAAAATGAGGTGTGGAGAAGCATTG-TTTCTGAG  194
       | |||||||||||||||||||||||||||||||||||||| ||||||||
seq2  -CCACATGTTATTCATGAAAATGAGGTGTGGAGAAGCATTGTTTTCTGAG  191

seq1  GACAAATGCAAAAT-AAAAAAGCTTTTTTACTTTTTTTTTTTTTTTTTTT  243
      |||||||||||||| ||||||||||||||||       ||||||||||||
seq2  GACAAATGCAAAATAAAAAAAGCTTTTTTAC-------TTTTTTTTTTTT  234

seq1  TTTTTTTTGATGAGGCAGAGATGCAGGTCACATGTCTTACTATATGTCTT  293
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATTGATGAGGCAGAGATGCAGGTCACATGTCTTACTATATGTCTT  284

seq1  TCCACTTCATTCTTTCAGGCAGGGTCTCTCACTGAGCCTGAAAGTTACCG  343
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TCCACTTCATTCTTTCAGGCAGGGTCTCTCACTGAG-CTGAAAGTTACCG  333

seq1  TATCATCTAGAATAGCCGGTCATCAGGTGCCAGGGATCTTCCAGTCTCTG  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATCTAGAATAGCCGGTCATCAGGTGCCAGGGATCTTCCAGTCTCTG  383

seq1  CCCCCAGTACAGGCTCCGTAGAGCGGCTGCTTGCTTGGCTTTTATGTGTG  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCAGTACAGGCTCCGTAGAGCGGCTGCTTGCTTGGCTTTTATGTGTG  433

seq1  TGGTTTTTCCGCTGTTTGGAGCAGTTTTATTGTCTTGTTGTCCATTTAGA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTTTCCGCTGTTTGGAGCAGTTTTATTGTCTTGTTGTCCATTTAGA  483

seq1  AGATGTGTAAACTCATGCCCTCGTGCTCATACAACAGTCACATCTTGACT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTGTAAACTCATGCCCTCGTGCTCATACAACAGTCACATCTTGACT  533

seq1  GGACCATCTCCTTAGCCCCTAAGAACTACATTTTTAAATTTTCCAATAAC  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCATCTCCTTAGCCCCTAAGAACTACATTTTTAAATTTTCCAATAAC  583

seq1  ATTGCTCGATGATATACAACTATTTATTTTTTTAATTAAGTGGAGGAATT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTCGATGATATACAACTATTTATTTTTTTAATTAAGTGGAGGAATT  633

seq1  ATTTAACTGTTCAACAGAGTAAGTCTTGCTTTTCTGCCCTGAAAAGACTC  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAACTGTTCAACAGAGTAAGTCTTGCTTTTCTGCCCTGAAAAGACTC  683

seq1  TGTTTAAGTATACCCGTTAAAACAGTCACCAATAGTGTAAAATGATGTCT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTAAGTATACCCGTTAAAACAGTCACCAATAGTGTAAAATGATGTCT  733

seq1  GAATATTCACGCCAACACTTGTTTCTTGTATTTTCTAACCTTGCTTCTCA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATTCACGCCAACACTTGTTTCTTGTATTTTCTAACCTTGCTTCTCA  783

seq1  TGCAGAACAGGTGTTTCATTTATCTTTATTTGGTTAATTATAATACTTGA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGAACAGGTGTTTCATTTATCTTTATTTGGTTAATTATAATACTTGA  833

seq1  AGGGCTAAGTCAATGACGTTACTAGCAATGTAGTTCGCTATTTCTCTTAG  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTAAGTCAATGACGTTACTAGCAATGTAGTTCGCTATTTCTCTTAG  883

seq1  TTCACTTAATAACTCTAGTAGTACGCATGAATGCTCATACAGATATATAC  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTTAATAACTCTAGTAGTACGCATGAATGCTCATACAGATATATAC  933

seq1  ATATATATTCATTTACATTTTCTTCTTATATAAATAACTTGCCTTATATT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATTCATTTACATTTTCTTCTTATATAAATAACTTGCCTTATATT  983

seq1  TTCTTAGTTTTGAATTTATAATCAAATGATCAAGATTTTAATATACTATT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAGTTTTGAATTTATAATCAAATGATCAAGATTTTAATATACTATT  1033

seq1  TATTGACATAAGTAATAATAATTCTTCATAGCCATGTGTTTGAACCCCAC  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGACATAAGTAATAATAATTCTTCATAGCCATGTGTTTGAACCCCAC  1083

seq1  TGAAGGCCAAAGGCATGCTGTAAAAAAACCAAGACAACTTTTCCCTTTGT  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGCCAAAGGCATGCTGTAAAAAAACCAAGACAACTTTTCCCTTTGT  1133

seq1  GTTGTTTTCCAAGTGAGAATTC  1165
      ||||||||||||||||||||||
seq2  GTTGTTTTCCAAGTGAGAATTC  1155