BAC Information

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BAC

Clone NameB6Ng01-332E13
Chromosome1 (Build37)
Map Location 161,081,507 - 161,255,850
singlet/doubletdoublet
Overlap gene4930562F17Rik, EG240853, LOC664972, Rfwd2
Upstream gene6430517E21Rik, Astn1, Pappa2
Downstream geneEG620484, Tnr, 4930523C07Rik, 4930562F07Rik, Tnn, Mrps14, Cacybp, Rabgap1l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-332E13.bB6Ng01-332E13.g
ACCGA118427GA118428
length1,1171,207
definitionB6Ng01-332E13.b B6Ng01-332E13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(161,081,507 - 161,082,621)(161,254,626 - 161,255,850)
sequence
gaattctttctaagtattttgctgaaagtgttttactttgcttttgtttt
gaagagtaatttgttgctgagagagtttatctggccacaggatttaggtt
gataatgactttcttgcagaactcagaagatctgcccaccttctatcatc
tgtcatcatctcttcaaaggtctccgaccaacagagcctggaggtgcaca
cctttgatccaaccactcaggaggcagaggcaagaggaatagtgagaatt
tgaggctagcctcaattgtattgagttccagagaggccctgttttctttt
cttttcttttcttttcttttcttttcttttctttcctttcctttcctttc
cttttcttttcttttcttttcttttcttttcttttcttttttcgagacag
ggtttctctgtatagccctggctgtcctggaactcactttgtagaccagg
ccggtgtcgaactcagaaatccgcctgcctctgcctcccaagtgctgaga
ttaaaggcgtgtgccaccatcttccggcgaggtcctgtttcaaattttaa
agcatgttaaaatctccagccagccaaagcaggttttctttgttagcaac
ttatattattcctaaagttgcttttactatgctttaactttgacctctgt
agttttactaaaatacatctacatgtagatttcttttacttcttctgtca
agaaacttgtgattctactgagctagtattcatggtgtttgtttgtttgt
tttaatgatgctgaacagccatcttgaatattacttttctatcattctct
tattctttcttgatgaaattcatagtatatgtttcagtttctcttagcct
tggcatcccagaatgtttcatattttctgatattttatttctttgaactg
ctttccaaataatatacagatttatcttctagttcagctggaagatacta
gctactgtttaatttatctattaatttcagtgtctatgattcatttctaa
cagtccaagtccattacctttttcttttattaaaaacagaatatttttct
accaacatatttctgaatatagtttctcttcttcccagcttctccacctc
ctcccaatctcctctcc

gaattctctaagggagataaggaaccaagttaaaaaaataaggaagcctg
tagagagaaattacatatggatttactagattatgagaggaataaacaaa
atatggaaccacccctagtgttagaaaggttgtatagtttgacaacaaat
tgttcacatcactgacattttactactttaaaaaagcaactaaaaagttt
tacaagggacatttgctgggaagaagcagacacacttaaaaagttctctt
taaaatagattttactgaaaaactggtttaggttattataaaaatcaaga
agtcatttaaagccaataatcattctactgctacactgaaggtggacttg
tatagtaacacactgggttacttactcaaataagttattttttctctcta
ttgcaccaaatattacttcttcaggacaagtagtgccagaaaccaaattt
gaagttcaaatgttattaaattataagcataacttaagagggcctaacaa
aaagtaatatttataagtaatataaaaatgaacaaagcaggtaagataca
cgtatttcaatgaaagacatgcaaatctgttgctatttgagaaagtaatc
caaggtccttttttttttttgcataaactacatcatcaatgataagacct
ctgtatcaagctcaccctccaaggagaatactcacgctgagacaatttct
tcaccacttacaaacttggcataagacactgcttttcggtgtcccttgaa
taccattattggctgtttagtgttacgaaggtcgtagtagtggacacagt
gatctaaaataaaattaaaagataaatgtagcaaatgaagaaaagggagg
caaaacaatttaactggatttgttgttctcatcagagcaaggggtggctg
aatgagagagctcatcttcacattgaaacattatttttgaagtattgttt
atgaaaactaccccctcagatgagtaggaatctaggagagagatccacat
tattctgttttagcctaaccaaagcagcagacttataattacaacgacac
agaagaaaaacagtagaaaacttgctagcctaagataaaggaagaaccta
gtccagcctaaccttaacgctagtaccgaactgagaatgcataccaccgg
acagtccgaaggtcatcccagccaggcctcatgccattaaactatggggg
tgaagct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_161081507_161082621
seq2: B6Ng01-332E13.b_49_1165

seq1  GAATTCTTTCTAAGTATTTTGCTGAAAGTGTTTTACTTTGCTTTTGTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCTAAGTATTTTGCTGAAAGTGTTTTACTTTGCTTTTGTTTT  50

seq1  GAAGAGTAATTTGTTGCTGAGAGAGTTTATCTGGCCACAGGATTTAGGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGTAATTTGTTGCTGAGAGAGTTTATCTGGCCACAGGATTTAGGTT  100

seq1  GATAATGACTTTCTTGCAGAACTCAGAAGATCTGCCCACCTTCTATCATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAATGACTTTCTTGCAGAACTCAGAAGATCTGCCCACCTTCTATCATC  150

seq1  TGTCATCATCTCTTCAAAGGTCTCCGACCAACAGAGCCTGGAGGTGCACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATCATCTCTTCAAAGGTCTCCGACCAACAGAGCCTGGAGGTGCACA  200

seq1  CCTTTGATCCAACCACTCAGGAGGCAGAGGCAAGAGGAATAGTGAGAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGATCCAACCACTCAGGAGGCAGAGGCAAGAGGAATAGTGAGAATT  250

seq1  TGAGGCTAGCCTCAATTGTATTGAGTTCCAGAGAGGCCCTGTTTTCTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCTAGCCTCAATTGTATTGAGTTCCAGAGAGGCCCTGTTTTCTTTT  300

seq1  CTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTCCTTTCCTTTCCTTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTCCTTTCCTTTCCTTTC  350

seq1  CTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTTTCGAGACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTTTCGAGACAG  400

seq1  GGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGG  450

seq1  CCGGTGTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCAAGTGCTGAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGTGTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCAAGTGCTGAGA  500

seq1  TTAAAGGCGTGTGCCACCATCTTCCGGCGAGGTCCTGTTTCAAATTTTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGGCGTGTGCCACCATCTTCCGGCGAGGTCCTGTTTCAAATTTTAA  550

seq1  AGCATGTTAAAATCTCCAGCCAGCCAAAGCAGGTTTTCTTTGTTAGCAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGTTAAAATCTCCAGCCAGCCAAAGCAGGTTTTCTTTGTTAGCAAC  600

seq1  TTATATTATTCCTAAAGTTGCTTTTACTATGCTTTAACTTTGACCTCTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATTATTCCTAAAGTTGCTTTTACTATGCTTTAACTTTGACCTCTGT  650

seq1  AGTTTTACTAAAATACATCTACATGTAGATTTCTTTTACTTCTTCTGTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTACTAAAATACATCTACATGTAGATTTCTTTTACTTCTTCTGTCA  700

seq1  AGAAACTTGTGATTCTACTGAGCTAGTATTCATGGTGTTTGTTTGTTTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACTTGTGATTCTACTGAGCTAGTATTCATGGTGTTTGTTTGTTTGT  750

seq1  TTTAATGATGCTGAACAGCCATCTTGAATATTACTTTTCTATCATTCTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATGATGCTGAACAGCCATCTTGAATATTACTTTTCTATCATTCTCT  800

seq1  TATTCTTTCTTGATGAAATTCATAGTATATGTTTCAGTTTCTCTTAGCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTTTCTTGATGAAATTCATAGTATATGTTTCAGTTTCTCTTAGCCT  850

seq1  TGGCATCCCAGAATGTTTCATATTTTCTGATATTTTATTTCTTTGAACTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATCCCAGAATGTTTCATATTTTCTGATATTTTATTTCTTTGAACTG  900

seq1  CTTTCCAAATAATATACAGATTTATCTTCTAGTTCAGCTGGAAGATACTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCAAATAATATACAGATTTATCTTCTAGTTCAGCTGGAAGATACTA  950

seq1  GCTACTGTTTAATTTATCTATTAATTTCAGTGTCTATGATTCATTTCTAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACTGTTTAATTTATCTATTAATTTCAGTGTCTATGATTCATTTCTAA  1000

seq1  CAGTCCAAGTCCATTACCTTTTTCTTTTATTAAAAACAG-ATATTTTTCA  1049
      ||||||||||||||||||||||||||||||||||||||| ||||||||| 
seq2  CAGTCCAAGTCCATTACCTTTTTCTTTTATTAAAAACAGAATATTTTTCT  1050

seq1  TACAACATA-TTCTGATTATAGTTT-TCTCTCTCCCAGCTTCTCCCACCT  1097
        ||||||| |||||| |||||||| |||   ||||||||||| ||||||
seq2  ACCAACATATTTCTGAATATAGTTTCTCTTCTTCCCAGCTTCT-CCACCT  1099

seq1  CCTCCCCATCTCCTCTCC  1115
      |||||| |||||||||||
seq2  CCTCCCAATCTCCTCTCC  1117


seq1: chr1_161254626_161255850
seq2: B6Ng01-332E13.g_66_1272 (reverse)

seq1  AGCTTCA--CCCATAGTTTAATTGCATGAGCACTGGCTTGGGAATTGACC  48
      |||||||  ||||||||||||| |||||||  ||||| |||||  |||||
seq2  AGCTTCACCCCCATAGTTTAATGGCATGAGGCCTGGC-TGGGA--TGACC  47

seq1  TTCGGGCTGTGTCGGGTGGTGTATTGCATCTTCATGTTCTGGTACTAGCC  98
      ||||| |  |||| ||||||    |||||  ||| |||| |||||||| |
seq2  TTCGGAC--TGTCCGGTGGT---ATGCATTCTCA-GTTC-GGTACTAG-C  89

seq1  GCTAAGTTTTAGGCCTGGACCTAGTTTCTTCTCTTTATCCTTAGCTAGCA  148
      | ||||  ||||| ||||| |||| |||||| ||||||| |  |||||||
seq2  GTTAAG-GTTAGG-CTGGA-CTAGGTTCTTC-CTTTATCTTAGGCTAGCA  135

seq1  GTTTTTCCTACTGTTTTCTTCCTGTTGTCTTTTGTATTTTATAGTCTGCT  198
        |||| ||||||||||  | ||| ||||  ||||| ||   ||||||| 
seq2  AGTTTT-CTACTGTTTTTCTTCTG-TGTC-GTTGTAATTATAAGTCTGC-  181

seq1  TGCTTTTGTTAGGCTAAAACAAGATAATGT-GATCTCTCTCCTAGATTCC  247
      |||||| ||||||||||||||  ||||||| |||||||||||||||||||
seq2  TGCTTTGGTTAGGCTAAAACAGAATAATGTGGATCTCTCTCCTAGATTCC  231

seq1  TTACCTCATCTGA-GGGGTAGTTTTCATAAACAATACTTCAAAAATAATG  296
      |   ||||||||| ||||||||||||||||||||||||||||||||||||
seq2  T--ACTCATCTGAGGGGGTAGTTTTCATAAACAATACTTCAAAAATAATG  279

seq1  TTTCAATGTGAAGATGAGCTCTCTCATTCAGCCACCCCCTTGCTCTGATG  346
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TTTCAATGTGAAGATGAGCTCTCTCATTCAGCCA-CCCCTTGCTCTGATG  328

seq1  AGAACAACAAATCCAGTTAAATTGTTTTGCCTCCCTTTTCTTCATTTGCT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAACAAATCCAGTTAAATTGTTTTGCCTCCCTTTTCTTCATTTGCT  378

seq1  ACATTTATCTTTTAATTTTATTTTAGATCACTGTGTCCACTACTACGACC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTATCTTTTAATTTTATTTTAGATCACTGTGTCCACTACTACGACC  428

seq1  TTCGTAACACTAAACAGCCAATAATGGTATTCAAGGGACACCGAAAAGCA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGTAACACTAAACAGCCAATAATGGTATTCAAGGGACACCGAAAAGCA  478

seq1  GTGTCTTATGCCAAGTTTGTAAGTGGTGAAGAAATTGTCTCAGCGTGAGT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTTATGCCAAGTTTGTAAGTGGTGAAGAAATTGTCTCAGCGTGAGT  528

seq1  ATTCTCCTTGGAGGGTGAGCTTGATACAGAGGTCTTATCATTGATGATGT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCCTTGGAGGGTGAGCTTGATACAGAGGTCTTATCATTGATGATGT  578

seq1  AGTTTATGCAAAAAAAAAAAAGGACCTTGGATTACTTTCTCAAATAGCAA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTATGCAAAAAAAAAAAAGGACCTTGGATTACTTTCTCAAATAGCAA  628

seq1  CAGATTTGCATGTCTTTCATTGAAATACGTGTATCTTACCTGCTTTGTTC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTTGCATGTCTTTCATTGAAATACGTGTATCTTACCTGCTTTGTTC  678

seq1  ATTTTTATATTACTTATAAATATTACTTTTTGTTAGGCCCTCTTAAGTTA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTATATTACTTATAAATATTACTTTTTGTTAGGCCCTCTTAAGTTA  728

seq1  TGCTTATAATTTAATAACATTTGAACTTCAAATTTGGTTTCTGGCACTAC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTATAATTTAATAACATTTGAACTTCAAATTTGGTTTCTGGCACTAC  778

seq1  TTGTCCTGAAGAAGTAATATTTGGTGCAATAGAGAGAAAAAATAACTTAT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCTGAAGAAGTAATATTTGGTGCAATAGAGAGAAAAAATAACTTAT  828

seq1  TTGAGTAAGTAACCCAGTGTGTTACTATACAAGTCCACCTTCAGTGTAGC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTAAGTAACCCAGTGTGTTACTATACAAGTCCACCTTCAGTGTAGC  878

seq1  AGTAGAATGATTATTGGCTTTAAATGACTTCTTGATTTTTATAATAACCT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGAATGATTATTGGCTTTAAATGACTTCTTGATTTTTATAATAACCT  928

seq1  AAACCAGTTTTTCAGTAAAATCTATTTTAAAGAGAACTTTTTAAGTGTGT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAGTTTTTCAGTAAAATCTATTTTAAAGAGAACTTTTTAAGTGTGT  978

seq1  CTGCTTCTTCCCAGCAAATGTCCCTTGTAAAACTTTTTAGTTGCTTTTTT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTCTTCCCAGCAAATGTCCCTTGTAAAACTTTTTAGTTGCTTTTTT  1028

seq1  AAAGTAGTAAAATGTCAGTGATGTGAACAATTTGTTGTCAAACTATACAA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAGTAAAATGTCAGTGATGTGAACAATTTGTTGTCAAACTATACAA  1078

seq1  CCTTTCTAACACTAGGGGTGGTTCCATATTTTGTTTATTCCTCTCATAAT  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCTAACACTAGGGGTGGTTCCATATTTTGTTTATTCCTCTCATAAT  1128

seq1  CTAGTAAATCCATATGTAATTTCTCTCTACAGGCTTCCTTATTTTTTTAA  1196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTAAATCCATATGTAATTTCTCTCTACAGGCTTCCTTATTTTTTTAA  1178

seq1  CTTGGTTCCTTATCTCCCTTAGAGAATTC  1225
      |||||||||||||||||||||||||||||
seq2  CTTGGTTCCTTATCTCCCTTAGAGAATTC  1207


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